Comparative Genomics

ACIAD2887 / TrEMBL Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 1040ff30534a44d7547080f4f7dbd3e8.TrEMBL.fasta
           14 sequences; 2,144 total letters



Query= ACIAD2887

Length=154
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q6F8K5 Type IV secretion protein Rhs [Acinetobacter baylyi (strai...  321     9e-119
A0A7G2SEZ3 Type IV secretion protein Rhs [Acinetobacter sp]           321     9e-119
A0A427LVC0 Type IV secretion protein Rhs [Acinetobacter soli]         242     2e-87 
A0A0M1I3E5 Type IV secretion protein Rhs [Acinetobacter sp. C15]      241     3e-87 
A0A1P8EEG6 Type IV secretion protein Rhs [Acinetobacter soli]         241     3e-87 
N9AKT4 Type IV secretion protein Rhs [Acinetobacter soli NIPH 2899]   241     5e-87 
A0A7T9UI75 Type IV secretion protein Rhs [Acinetobacter ursingii]     207     2e-73 
A0A009YJA0 Type IV secretion protein Rhs [Acinetobacter sp. 479375]   207     2e-73 
A0A3A8ENG1 Type IV secretion protein Rhs [Acinetobacter guerrae]      206     6e-73 
N9C2I0 Type IV secretion protein Rhs [Acinetobacter ursingii ANC ...  204     1e-72 
A0A427PPK3 Type IV secretion protein Rhs [Acinetobacter sp. FDAAR...  204     1e-72 
A0A1G6GWK6 Type IV secretion protein Rhs [Acinetobacter marinus]      204     2e-72 
A0A3D2SSG0 Type IV secretion protein Rhs [Acinetobacter ursingii]     203     6e-72 
A0A240E8V8 Type IV secretion protein Rhs [Acinetobacter puyangensis]  202     1e-71 


>Q6F8K5 Type IV secretion protein Rhs [Acinetobacter baylyi (strain 
ATCC 33305 / BD413 / ADP1)]
Length=153

 Score = 321 bits (823),  Expect = 9e-119
 Identities = 153/153 (100%), Positives = 153/153 (100%), Gaps = 0/153 (0%)

Query  1    MLMHKFLILRKRSLTVGEIRLAHAIFADHLDLKSICIYAHRLIIKHYAISPNGHIYFNIA  60
            MLMHKFLILRKRSLTVGEIRLAHAIFADHLDLKSICIYAHRLIIKHYAISPNGHIYFNIA
Sbjct  1    MLMHKFLILRKRSLTVGEIRLAHAIFADHLDLKSICIYAHRLIIKHYAISPNGHIYFNIA  60

Query  61   DWCDDFSTQSIEKQSWLIHELVHVWQYQQGIKLIRKGIFERKYQYVLQQGKQFLHYGIEQ  120
            DWCDDFSTQSIEKQSWLIHELVHVWQYQQGIKLIRKGIFERKYQYVLQQGKQFLHYGIEQ
Sbjct  61   DWCDDFSTQSIEKQSWLIHELVHVWQYQQGIKLIRKGIFERKYQYVLQQGKQFLHYGIEQ  120

Query  121  QAQMVQDYFLKKHYRQDCDDLAACIPFVSRNNI  153
            QAQMVQDYFLKKHYRQDCDDLAACIPFVSRNNI
Sbjct  121  QAQMVQDYFLKKHYRQDCDDLAACIPFVSRNNI  153


>A0A7G2SEZ3 Type IV secretion protein Rhs [Acinetobacter sp]
Length=153

 Score = 321 bits (823),  Expect = 9e-119
 Identities = 153/153 (100%), Positives = 153/153 (100%), Gaps = 0/153 (0%)

Query  1    MLMHKFLILRKRSLTVGEIRLAHAIFADHLDLKSICIYAHRLIIKHYAISPNGHIYFNIA  60
            MLMHKFLILRKRSLTVGEIRLAHAIFADHLDLKSICIYAHRLIIKHYAISPNGHIYFNIA
Sbjct  1    MLMHKFLILRKRSLTVGEIRLAHAIFADHLDLKSICIYAHRLIIKHYAISPNGHIYFNIA  60

Query  61   DWCDDFSTQSIEKQSWLIHELVHVWQYQQGIKLIRKGIFERKYQYVLQQGKQFLHYGIEQ  120
            DWCDDFSTQSIEKQSWLIHELVHVWQYQQGIKLIRKGIFERKYQYVLQQGKQFLHYGIEQ
Sbjct  61   DWCDDFSTQSIEKQSWLIHELVHVWQYQQGIKLIRKGIFERKYQYVLQQGKQFLHYGIEQ  120

Query  121  QAQMVQDYFLKKHYRQDCDDLAACIPFVSRNNI  153
            QAQMVQDYFLKKHYRQDCDDLAACIPFVSRNNI
Sbjct  121  QAQMVQDYFLKKHYRQDCDDLAACIPFVSRNNI  153


>A0A427LVC0 Type IV secretion protein Rhs [Acinetobacter soli]
Length=151

 Score = 242 bits (617),  Expect = 2e-87
 Identities = 111/148 (75%), Positives = 128/148 (86%), Gaps = 0/148 (0%)

Query  2    LMHKFLILRKRSLTVGEIRLAHAIFADHLDLKSICIYAHRLIIKHYAISPNGHIYFNIAD  61
            ++  FLILR+R LT GEI LA  IF+ HL+  SI I+AHRL++KHYAISPNGHIYFN  D
Sbjct  1    MLQNFLILRRRKLTSGEISLAREIFSSHLNYDSIFIFAHRLVLKHYAISPNGHIYFNAID  60

Query  62   WCDDFSTQSIEKQSWLIHELVHVWQYQQGIKLIRKGIFERKYQYVLQQGKQFLHYGIEQQ  121
            WC+DFSTQSIEKQSWLIHELVHVWQ QQGIKLIRK IFER+Y YVL++GK FL +G+EQQ
Sbjct  61   WCEDFSTQSIEKQSWLIHELVHVWQVQQGIKLIRKAIFERQYHYVLKRGKTFLEFGVEQQ  120

Query  122  AQMVQDYFLKKHYRQDCDDLAACIPFVS  149
            AQMVQDYFLKKH +Q CDDLAACIPF++
Sbjct  121  AQMVQDYFLKKHRQQSCDDLAACIPFIA  148


>A0A0M1I3E5 Type IV secretion protein Rhs [Acinetobacter sp. C15]
Length=151

 Score = 241 bits (616),  Expect = 3e-87
 Identities = 111/148 (75%), Positives = 128/148 (86%), Gaps = 0/148 (0%)

Query  2    LMHKFLILRKRSLTVGEIRLAHAIFADHLDLKSICIYAHRLIIKHYAISPNGHIYFNIAD  61
            ++  FLILR+R LT GEI LA  IF+ HL+  SI I AHRL++KHYAISPNGHIYFN+ D
Sbjct  1    MLQNFLILRRRKLTSGEISLAREIFSSHLNYDSIFICAHRLVLKHYAISPNGHIYFNVID  60

Query  62   WCDDFSTQSIEKQSWLIHELVHVWQYQQGIKLIRKGIFERKYQYVLQQGKQFLHYGIEQQ  121
            WC+DFSTQSIEKQSWLIHELVHVWQ QQGIKLIRK IFER+Y YVL++GK FL +G+EQQ
Sbjct  61   WCEDFSTQSIEKQSWLIHELVHVWQVQQGIKLIRKAIFERQYHYVLKRGKTFLEFGVEQQ  120

Query  122  AQMVQDYFLKKHYRQDCDDLAACIPFVS  149
            AQMVQDYFLKKH +Q CDDLAACIPF++
Sbjct  121  AQMVQDYFLKKHRQQSCDDLAACIPFIA  148


>A0A1P8EEG6 Type IV secretion protein Rhs [Acinetobacter soli]
Length=151

 Score = 241 bits (616),  Expect = 3e-87
 Identities = 111/148 (75%), Positives = 128/148 (86%), Gaps = 0/148 (0%)

Query  2    LMHKFLILRKRSLTVGEIRLAHAIFADHLDLKSICIYAHRLIIKHYAISPNGHIYFNIAD  61
            ++  FLILR+R LT GEI LA  IF+ HL+  SI I AHRL++KHYAISPNGHIYFN+ D
Sbjct  1    MLQNFLILRRRKLTSGEISLAREIFSSHLNYDSIFICAHRLVLKHYAISPNGHIYFNVID  60

Query  62   WCDDFSTQSIEKQSWLIHELVHVWQYQQGIKLIRKGIFERKYQYVLQQGKQFLHYGIEQQ  121
            WC+DFSTQSIEKQSWLIHELVHVWQ QQGIKLIRK IFER+Y YVL++GK FL +G+EQQ
Sbjct  61   WCEDFSTQSIEKQSWLIHELVHVWQVQQGIKLIRKAIFERQYHYVLKRGKTFLEFGVEQQ  120

Query  122  AQMVQDYFLKKHYRQDCDDLAACIPFVS  149
            AQMVQDYFLKKH +Q CDDLAACIPF++
Sbjct  121  AQMVQDYFLKKHRQQSCDDLAACIPFIA  148


>N9AKT4 Type IV secretion protein Rhs [Acinetobacter soli NIPH 
2899]
Length=151

 Score = 241 bits (615),  Expect = 5e-87
 Identities = 111/148 (75%), Positives = 128/148 (86%), Gaps = 0/148 (0%)

Query  2    LMHKFLILRKRSLTVGEIRLAHAIFADHLDLKSICIYAHRLIIKHYAISPNGHIYFNIAD  61
            ++  FLILR+R LT GEI LA  IF+ HL+  SI I AHRL++KHYAISPNGHIYFN+ D
Sbjct  1    MLQNFLILRRRKLTSGEISLAREIFSSHLNYDSIFICAHRLVLKHYAISPNGHIYFNLID  60

Query  62   WCDDFSTQSIEKQSWLIHELVHVWQYQQGIKLIRKGIFERKYQYVLQQGKQFLHYGIEQQ  121
            WC+DFSTQSIEKQSWLIHELVHVWQ QQGIKLIRK IFER+Y YVL++GK FL +G+EQQ
Sbjct  61   WCEDFSTQSIEKQSWLIHELVHVWQVQQGIKLIRKAIFERQYHYVLKRGKTFLEFGVEQQ  120

Query  122  AQMVQDYFLKKHYRQDCDDLAACIPFVS  149
            AQMVQDYFLKKH +Q CDDLAACIPF++
Sbjct  121  AQMVQDYFLKKHRQQSCDDLAACIPFIA  148


>A0A7T9UI75 Type IV secretion protein Rhs [Acinetobacter ursingii]
Length=152

 Score = 207 bits (526),  Expect = 2e-73
 Identities = 94/148 (64%), Positives = 119/148 (80%), Gaps = 0/148 (0%)

Query  3    MHKFLILRKRSLTVGEIRLAHAIFADHLDLKSICIYAHRLIIKHYAISPNGHIYFNIADW  62
            ++K LI++KR LT  E +LA ++F   ++L+ I I AHRL++KHYAISPNG+IYF+ A+W
Sbjct  5    LNKHLIVQKRLLTHAEKQLAMSVFGTSIELEHIQIVAHRLVLKHYAISPNGNIYFHPANW  64

Query  63   CDDFSTQSIEKQSWLIHELVHVWQYQQGIKLIRKGIFERKYQYVLQQGKQFLHYGIEQQA  122
            C+DF+  +I KQSW IHELVHVWQYQQG+KLIR  +F+RKY YVLQQGKQF  YGIEQQA
Sbjct  65   CEDFTQDTILKQSWFIHELVHVWQYQQGVKLIRTALFDRKYNYVLQQGKQFFQYGIEQQA  124

Query  123  QMVQDYFLKKHYRQDCDDLAACIPFVSR  150
            QMVQDYF++ H  Q C DLA CIPF+ +
Sbjct  125  QMVQDYFIRLHTGQPCQDLATCIPFIPK  152


>A0A009YJA0 Type IV secretion protein Rhs [Acinetobacter sp. 479375]
Length=152

 Score = 207 bits (526),  Expect = 2e-73
 Identities = 94/148 (64%), Positives = 119/148 (80%), Gaps = 0/148 (0%)

Query  3    MHKFLILRKRSLTVGEIRLAHAIFADHLDLKSICIYAHRLIIKHYAISPNGHIYFNIADW  62
            ++K LI++KR LT  E +LA ++F   ++L+ I I AHRL++KHYAISPNG+IYF+ A+W
Sbjct  5    LNKHLIVQKRLLTHAEKQLAMSVFGTSIELEHIQIVAHRLVLKHYAISPNGNIYFHPANW  64

Query  63   CDDFSTQSIEKQSWLIHELVHVWQYQQGIKLIRKGIFERKYQYVLQQGKQFLHYGIEQQA  122
            C+DF+  +I KQSW IHELVHVWQYQQG+KLIR  +F+RKY YVLQQGKQF  YGIEQQA
Sbjct  65   CEDFTQDTILKQSWFIHELVHVWQYQQGVKLIRTALFDRKYNYVLQQGKQFFQYGIEQQA  124

Query  123  QMVQDYFLKKHYRQDCDDLAACIPFVSR  150
            QMVQDYF++ H  Q C DLA CIPF+ +
Sbjct  125  QMVQDYFIRLHTGQPCQDLATCIPFIPK  152


>A0A3A8ENG1 Type IV secretion protein Rhs [Acinetobacter guerrae]
Length=158

 Score = 206 bits (523),  Expect = 6e-73
 Identities = 92/150 (61%), Positives = 123/150 (82%), Gaps = 0/150 (0%)

Query  3    MHKFLILRKRSLTVGEIRLAHAIFADHLDLKSICIYAHRLIIKHYAISPNGHIYFNIADW  62
            ++K+L+L+KR LT  E +LA +IF   L L+ I I AHR+++KH+AISPNG+IYFN+A+W
Sbjct  5    LNKYLVLKKRLLTKAEKQLAVSIFGTSLQLEDIQIVAHRMVLKHFAISPNGNIYFNLANW  64

Query  63   CDDFSTQSIEKQSWLIHELVHVWQYQQGIKLIRKGIFERKYQYVLQQGKQFLHYGIEQQA  122
             +DF+ ++I KQSW IHELVHVWQ QQGIKLIRK IF+R+Y+YVL+ GKQF HYG+EQQA
Sbjct  65   SEDFAQETILKQSWFIHELVHVWQVQQGIKLIRKAIFDRQYRYVLEHGKQFFHYGVEQQA  124

Query  123  QMVQDYFLKKHYRQDCDDLAACIPFVSRNN  152
            QMVQDYF++ H  ++C DLA CIPF+  ++
Sbjct  125  QMVQDYFIRLHTGKNCQDLAECIPFLPHSS  154


>N9C2I0 Type IV secretion protein Rhs [Acinetobacter ursingii 
ANC 3649]
Length=152

 Score = 204 bits (520),  Expect = 1e-72
 Identities = 93/148 (63%), Positives = 118/148 (80%), Gaps = 0/148 (0%)

Query  3    MHKFLILRKRSLTVGEIRLAHAIFADHLDLKSICIYAHRLIIKHYAISPNGHIYFNIADW  62
            ++K L+++KR LT  E +LA ++F   + L+ I I AHRL++KHYAISPNG+IYF+ A+W
Sbjct  5    LNKHLMVQKRLLTHAEKQLAMSVFGTSIKLEHIQIVAHRLVLKHYAISPNGNIYFHPANW  64

Query  63   CDDFSTQSIEKQSWLIHELVHVWQYQQGIKLIRKGIFERKYQYVLQQGKQFLHYGIEQQA  122
            C+DF+  +I KQSW IHELVHVWQYQQG+KLIR  +F+RKY YVLQQGKQF  YGIEQQA
Sbjct  65   CEDFTQDTILKQSWFIHELVHVWQYQQGVKLIRTALFDRKYNYVLQQGKQFFQYGIEQQA  124

Query  123  QMVQDYFLKKHYRQDCDDLAACIPFVSR  150
            QMVQDYF++ H  Q C DLA CIPF+ +
Sbjct  125  QMVQDYFIRLHTGQPCQDLATCIPFIPK  152


>A0A427PPK3 Type IV secretion protein Rhs [Acinetobacter sp. FDAARGOS_515]
Length=152

 Score = 204 bits (520),  Expect = 1e-72
 Identities = 93/148 (63%), Positives = 118/148 (80%), Gaps = 0/148 (0%)

Query  3    MHKFLILRKRSLTVGEIRLAHAIFADHLDLKSICIYAHRLIIKHYAISPNGHIYFNIADW  62
            ++K L+++KR LT  E +LA ++F   + L+ I I AHRL++KHYAISPNG+IYF+ A+W
Sbjct  5    LNKHLMVQKRLLTHAEKQLAMSVFGTSIKLEHIQIVAHRLVLKHYAISPNGNIYFHPANW  64

Query  63   CDDFSTQSIEKQSWLIHELVHVWQYQQGIKLIRKGIFERKYQYVLQQGKQFLHYGIEQQA  122
            C+DF+  +I KQSW IHELVHVWQYQQG+KLIR  +F+RKY YVLQQGKQF  YGIEQQA
Sbjct  65   CEDFTQDTILKQSWFIHELVHVWQYQQGVKLIRTALFDRKYNYVLQQGKQFFQYGIEQQA  124

Query  123  QMVQDYFLKKHYRQDCDDLAACIPFVSR  150
            QMVQDYF++ H  Q C DLA CIPF+ +
Sbjct  125  QMVQDYFIRLHTGQPCQDLATCIPFIPK  152


>A0A1G6GWK6 Type IV secretion protein Rhs [Acinetobacter marinus]
Length=160

 Score = 204 bits (520),  Expect = 2e-72
 Identities = 93/144 (65%), Positives = 116/144 (81%), Gaps = 0/144 (0%)

Query  6    FLILRKRSLTVGEIRLAHAIFADHLDLKSICIYAHRLIIKHYAISPNGHIYFNIADWCDD  65
            +LIL++R+LTVGEI LA +IFA+HLD   + I +HRL++ HYAISPNGHIYF+  DW  D
Sbjct  11   WLILKRRALTVGEIALARSIFAEHLDYAKVEIVSHRLVLSHYAISPNGHIYFSPKDWRAD  70

Query  66   FSTQSIEKQSWLIHELVHVWQYQQGIKLIRKGIFERKYQYVLQQGKQFLHYGIEQQAQMV  125
            FS +S+  QSWLIHEL HVWQ QQGI +++K +F+R+Y+YVLQ GK FL+YGIEQQAQMV
Sbjct  71   FSKESLAIQSWLIHELTHVWQVQQGISVVKKALFDRRYRYVLQLGKSFLNYGIEQQAQMV  130

Query  126  QDYFLKKHYRQDCDDLAACIPFVS  149
            QDYFLK H  + C+DL  CIPF S
Sbjct  131  QDYFLKSHRGEQCEDLRQCIPFFS  154


>A0A3D2SSG0 Type IV secretion protein Rhs [Acinetobacter ursingii]
Length=152

 Score = 203 bits (516),  Expect = 6e-72
 Identities = 92/148 (62%), Positives = 117/148 (79%), Gaps = 0/148 (0%)

Query  3    MHKFLILRKRSLTVGEIRLAHAIFADHLDLKSICIYAHRLIIKHYAISPNGHIYFNIADW  62
            ++K L+++KR LT  E +LA ++F   + L+ I I AHRL++KHYAISPNG+IYF+ A+W
Sbjct  5    LNKHLMVQKRLLTHAEKQLAMSVFGTSIKLEHIQIVAHRLVLKHYAISPNGNIYFHPANW  64

Query  63   CDDFSTQSIEKQSWLIHELVHVWQYQQGIKLIRKGIFERKYQYVLQQGKQFLHYGIEQQA  122
            C+DF+  +I KQSW IHELVHVWQYQQG+KLIR  +F+RKY YVLQQGKQF  YGIEQQA
Sbjct  65   CEDFTQDTILKQSWFIHELVHVWQYQQGVKLIRTALFDRKYNYVLQQGKQFFQYGIEQQA  124

Query  123  QMVQDYFLKKHYRQDCDDLAACIPFVSR  150
            QMVQDYF++ H  Q C DL  CIPF+ +
Sbjct  125  QMVQDYFIRLHTGQPCQDLVTCIPFIPK  152


>A0A240E8V8 Type IV secretion protein Rhs [Acinetobacter puyangensis]
Length=156

 Score = 202 bits (514),  Expect = 1e-71
 Identities = 91/141 (65%), Positives = 114/141 (81%), Gaps = 0/141 (0%)

Query  8    ILRKRSLTVGEIRLAHAIFADHLDLKSICIYAHRLIIKHYAISPNGHIYFNIADWCDDFS  67
            +L++RSLT+GE  LA+++F   L L  I I AHRL+++HYAISPNG+IYFN  DW DDF+
Sbjct  14   VLKRRSLTIGEKALAYSVFGQQLKLDDIQIIAHRLVLQHYAISPNGNIYFNQKDWKDDFA  73

Query  68   TQSIEKQSWLIHELVHVWQYQQGIKLIRKGIFERKYQYVLQQGKQFLHYGIEQQAQMVQD  127
             +SI  QSWLIHELVHVWQ QQGI +++K +F+R+YQYV++ GK FLHYGIEQQAQMVQD
Sbjct  74   QESIALQSWLIHELVHVWQLQQGIAVVKKALFDRRYQYVIRAGKSFLHYGIEQQAQMVQD  133

Query  128  YFLKKHYRQDCDDLAACIPFV  148
            YFLK    Q+CDDL  CIPF+
Sbjct  134  YFLKSRTGQNCDDLKTCIPFL  154



Lambda      K        H        a         alpha
   0.333    0.144    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200160


  Database: 1040ff30534a44d7547080f4f7dbd3e8.TrEMBL.fasta
    Posted date:  May 19, 2024  9:18 PM
  Number of letters in database: 2,144
  Number of sequences in database:  14



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40