BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: fe95ba75c9ec4fa42d33c5ec2a37c06e.SwissProt.fasta
           2 sequences; 1,303 total letters



Query= ACIAD2889

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P57654 ATP-dependent DNA helicase Rep [Buchnera aphidicola subsp....  37.4    1e-06
O51889 ATP-dependent DNA helicase Rep [Buchnera aphidicola subsp....  35.4    5e-06


>P57654 ATP-dependent DNA helicase Rep [Buchnera aphidicola subsp. 
Acyrthosiphon pisum (strain APS)]
Length=645

 Score = 37.4 bits (85),  Expect = 1e-06
 Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 0/38 (0%)

Query  82   FIGEVSKQIFISALKSSSTLNDLISDHQFEIWLSKFLE  119
            FI ++ K    S LK S+ ++D++ D ++E WLSKFL+
Sbjct  456  FISKIEKFTAWSCLKPSNIIDDIVDDLEYEKWLSKFLK  493


>O51889 ATP-dependent DNA helicase Rep [Buchnera aphidicola subsp. 
Schizaphis graminum (strain Sg)]
Length=658

 Score = 35.4 bits (80),  Expect = 5e-06
 Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query  81   EFIGEVSKQIFISALKSSSTLNDLISDHQFEIWLSKFL-ELEHVRVYLNN  129
            +FI  + K I +S LK    L+ +I+D ++E+WL+K L E + ++  +NN
Sbjct  455  DFIYWIKKIIKLSLLKEDIILDKIINDIKYELWLTKILKEPKKIKTSINN  504


 Score = 16.2 bits (30),  Expect = 5.4
 Identities = 27/138 (20%), Positives = 52/138 (38%), Gaps = 10/138 (7%)

Query  85   EVSKQIFISALKSSSTLND--LISDHQFEI--WLSKFLELEHVRVYLNNFLRDSPAI---  137
            E  + + +  + S S  ND  L+    F I  W +KFL    V++   + L    A    
Sbjct  110  ERDQMMLLKKICSKSIKNDTKLLKKLVFMISFWKNKFLTPLQVQLSAQSNLEKDFAFFYK  169

Query  138  QQLCHFIATTVIQKKLPGFLQNPNFQEHHTQHPHSSWQQRIKRFSLKQQQRIEQKLEDYL  197
            Q   H   + ++       +  P     + Q   + WQ++I    + + Q       + L
Sbjct  170  QYTFHLRKSNILD--FDDLICIPTSLLKNNQIIQNRWQKKISYLLVDEYQDTNNSQYE-L  226

Query  198  ATFIQEQLAELTILSNDD  215
               +    +  T++ +DD
Sbjct  227  IKMLTNVNSNFTLVGDDD  244



Lambda      K        H        a         alpha
   0.324    0.138    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 377916


  Database: fe95ba75c9ec4fa42d33c5ec2a37c06e.SwissProt.fasta
    Posted date:  May 9, 2024  12:05 PM
  Number of letters in database: 1,303
  Number of sequences in database:  2



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40