BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 04a65dabaacf4481286ebf34da8bea42.SwissProt.fasta
19 sequences; 11,514 total letters
Query= ACIAD2899
Length=630
Score E
Sequences producing significant alignments: (Bits) Value
Q08346 DNA primase [Haemophilus influenzae (strain ATCC 51907 / D... 345 4e-114
P0A118 DNA primase [Pseudomonas putida (strain ATCC 47054 / DSM 6... 328 1e-106
P0A119 DNA primase [Pseudomonas putida] 328 1e-106
P07362 DNA primase [Salmonella typhimurium (strain LT2 / SGSC1412... 324 5e-106
Q8FDG5 DNA primase [Escherichia coli O6:H1 (strain CFT073 / ATCC ... 323 1e-105
P0ABS6 DNA primase [Escherichia coli O157:H7] 323 1e-105
P0ABS7 DNA primase [Shigella flexneri] 323 1e-105
P0ABS5 DNA primase [Escherichia coli (strain K12)] 323 1e-105
P57029 DNA primase [Neisseria meningitidis serogroup B (strain MC... 321 1e-104
P57028 DNA primase [Neisseria meningitidis serogroup A / serotype... 314 3e-102
Q9CLI9 DNA primase [Pasteurella multocida (strain Pm70)] 301 3e-97
P71481 DNA primase [Legionella pneumophila] 268 1e-84
P32000 DNA primase [Buchnera aphidicola subsp. Schizaphis graminu... 262 2e-82
Q9I5W0 DNA primase [Pseudomonas aeruginosa (strain ATCC 15692 / D... 249 1e-76
P33655 DNA primase [Clostridium acetobutylicum (strain ATCC 824 /... 244 1e-75
P74893 DNA primase [Synechococcus elongatus (strain ATCC 33912 / ... 214 8e-64
P47762 DNA primase [Listeria monocytogenes serovar 1/2a (strain A... 211 3e-63
P50070 DNA primase [Myxococcus xanthus] 209 2e-62
P30103 DNA primase [Rickettsia prowazekii (strain Madrid E)] 208 3e-62
>Q08346 DNA primase [Haemophilus influenzae (strain ATCC 51907
/ DSM 11121 / KW20 / Rd)]
Length=593
Score = 345 bits (886), Expect = 4e-114
Identities = 199/522 (38%), Positives = 295/522 (57%), Gaps = 72/522 (14%)
Query 2 AIPQHTIDQILDRTDLVELIGQRVKLKKTGRTYSGCCPFHQEKSPSFHVYRDKGYYHCFG 61
+IP+ ID +L ++D+V++I RVKLKK GR Y CCPFH EK+PSF V + K +YHCFG
Sbjct 4 SIPRPFIDDLLTKSDIVDVINTRVKLKKAGRDYQACCPFHHEKTPSFTVSQKKQFYHCFG 63
Query 62 CQANGNAIRFLMDIDGRNFIDVMQELSSKSGVELPKDNFEQKKLSYKRNTQKPEPKPVVN 121
C A+GNAI FLMD D FI+ ++EL++ +G+E+P + KR +P+
Sbjct 64 CGAHGNAISFLMDYDKLEFIEAIEELAAMAGLEIPYE---------KRVNHSGKPQANYQ 114
Query 122 TEKSAPSHHAAISESSEQIDGLQAPSYFDDPFAQFDQSYMGFEDAPQEGNLYDLLENVAQ 181
T++ NLY+L++ +A
Sbjct 115 TKR----------------------------------------------NLYELMQEIAT 128
Query 182 FYEKQLPNSNKAQQYFKQRGLSAETIQFWRLGYAPEDWQHLEKAFPYDIEG---LKQVGL 238
FY+ QLP + +AQ+Y +QRGLS E I+ +++G+ P + + F + E L ++G+
Sbjct 129 FYQNQLPLNTQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKFGVNREEQQKLIELGM 188
Query 239 IRSSDSGRDFDLLRERVIFPIRDHKGRVVGFGGRALNDEIKPKYINSPDSEIFHKNQLLY 298
+ +D G +D R R++FPIRD +GR V FGGR L DE KPKY+NSP++ +HK + LY
Sbjct 189 LSRNDRGNIYDKFRNRIMFPIRDKRGRTVAFGGRVLTDE-KPKYLNSPETITYHKGKELY 247
Query 299 GLYEGRKL--KAKDWLMVEGYMDVIALQQYGVYGAVATLGTASNADHLNTLFKQNSRITI 356
GLYE + + K L+VEGYMDV+AL Q+GV AVA+LGT++ ++ + + + ++
Sbjct 248 GLYEALQTNDEPKQLLVVEGYMDVVALAQFGVDYAVASLGTSTTSEQIQLILRSTEQVVC 307
Query 357 AFDGDAAGQKAARRTLEIALPSLNDGRELKFFVLPKEHDPDSLIRREGLEHFQRLLEQAP 416
+DGD AG+ AA R LE ALP L DGR+LKF LP +PD+ IR+ G E F+ +E A
Sbjct 308 CYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDGEEPDTYIRQYGKEKFEEYIESAQ 367
Query 417 LLSDFIFAHLTQQHDISTPEGKSQVMGELRELTELLPKQGSFRYLLTQSFREKLG----- 471
LS+F+FAHL+ Q D ST EG+ +++ L +P + R L +KLG
Sbjct 368 SLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLIHQIPGE-MLRLSLRNMLAQKLGIFDQT 426
Query 472 ----LGRKWTPQISHDASLSFN-IQTKDEDFAVALLMQHPYL 508
L K Q + ++ N I+ ++LLMQ+P L
Sbjct 427 QLENLIPKKLEQANTQQKVTHNKIKKTPMRMVISLLMQNPEL 468
>P0A118 DNA primase [Pseudomonas putida (strain ATCC 47054 / DSM
6125 / CFBP 8728 / NCIMB 11950 / KT2440)]
Length=660
Score = 328 bits (841), Expect = 1e-106
Identities = 199/531 (37%), Positives = 287/531 (54%), Gaps = 80/531 (15%)
Query 3 IPQHTIDQILDRTDLVELIGQRVKLKKTGRTYSGCCPFHQEKSPSFHVYRDKGYYHCFGC 62
IPQ ID +++R D+V+++ RV+LKKTG+ YS CCPFH+EK+PSF V DK +Y+CFGC
Sbjct 5 IPQSFIDDLINRLDIVDVVSSRVQLKKTGKNYSACCPFHKEKTPSFTVSPDKQFYYCFGC 64
Query 63 QANGNAIRFLMDIDGRNFIDVMQELSSKSGVELPKDNFEQKKLSYKRNTQKPEPKPVVNT 122
A GNA+ F+MD D +F ++EL+ +G+E+P++ R QKP
Sbjct 65 GAGGNALGFVMDHDNLDFPQAVEELARAAGMEVPREQ--------GRRDQKPRQ------ 110
Query 123 EKSAPSHHAAISESSEQIDGLQAPSYFDDPFAQFDQSYMGFEDAPQEGNLYDLLENVAQF 182
P + LY LL+ ++F
Sbjct 111 --------------------------------------------PTDSPLYPLLDAASEF 126
Query 183 YEKQL---PNSNKAQQYFKQRGLSAETIQFWRLGYAPEDWQHLEKAFPYDIEGLKQVG-- 237
Y + L P+ A Y K RGLS E + + LG+AP W +L K D K +
Sbjct 127 YRQALRSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLLKHLGADTLQQKVMIDA 186
Query 238 --LIRSSDSGRDFDLLRERVIFPIRDHKGRVVGFGGRALNDEIKPKYINSPDSEIFHKNQ 295
LI +++SG+ +D R+RV+FPIRD +GR++ FGGR L D+ KPKY+NSP++ +FHK Q
Sbjct 187 GLLIENAESGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGDD-KPKYLNSPETPVFHKGQ 245
Query 296 LLYGLYEGRKLKAK--DWLMVEGYMDVIALQQYGVYGAVATLGTASNADHLNTLFKQNSR 353
LYGLYE RK + ++VEGYMDVIAL Q G+ AVATLGTA++ +HL LF+
Sbjct 246 ELYGLYEARKHNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTATSEEHLKRLFRVVPS 305
Query 354 ITIAFDGDAAGQKAARRTLEIALPSLNDGRELKFFVLPKEHDPDSLIRREGLEHFQ-RLL 412
+ FDGD AG+KAA R LE L +L DGR +F LP+ DPDSL+R EG + F R+
Sbjct 306 VLFCFDGDQAGRKAAWRALESTLSNLQDGRRARFLFLPEGEDPDSLVRAEGTDAFMARIN 365
Query 413 EQAPLLSDFIFAHLTQQHDISTPEGKSQVMGELRELTELLPKQGSFRYLLTQSFREKLGL 472
+ + L+D+ F L + D + EGK+ + L E +P + R L+ +E GL
Sbjct 366 QHSQPLADYFFEQLGVEADPRSLEGKAHMATLAAPLIEKIP-GANLRQLMRNRLKEITGL 424
Query 473 GRKWTPQISHDASLSFNIQTKDEDF---AVAL-------LMQHPYLYIHFE 513
+ Q++ A + ++ D + A+A + QH Y +H E
Sbjct 425 DPQQVEQLAQQAPATSSMPDYDPGYDYDAMASYTPDYGDMPQHDYAPVHQE 475
Score = 22.3 bits (46), Expect = 1.1
Identities = 11/35 (31%), Positives = 17/35 (49%), Gaps = 0/35 (0%)
Query 498 AVALLMQHPYLYIHFEALRAFIDPQQLLAQILAII 532
A+ L+ HP L E F D + L +Q+L +
Sbjct 525 ALRTLLHHPLLAGKVEDASHFADEEHLYSQLLVAL 559
>P0A119 DNA primase [Pseudomonas putida]
Length=660
Score = 328 bits (841), Expect = 1e-106
Identities = 199/531 (37%), Positives = 287/531 (54%), Gaps = 80/531 (15%)
Query 3 IPQHTIDQILDRTDLVELIGQRVKLKKTGRTYSGCCPFHQEKSPSFHVYRDKGYYHCFGC 62
IPQ ID +++R D+V+++ RV+LKKTG+ YS CCPFH+EK+PSF V DK +Y+CFGC
Sbjct 5 IPQSFIDDLINRLDIVDVVSSRVQLKKTGKNYSACCPFHKEKTPSFTVSPDKQFYYCFGC 64
Query 63 QANGNAIRFLMDIDGRNFIDVMQELSSKSGVELPKDNFEQKKLSYKRNTQKPEPKPVVNT 122
A GNA+ F+MD D +F ++EL+ +G+E+P++ R QKP
Sbjct 65 GAGGNALGFVMDHDNLDFPQAVEELARAAGMEVPREQ--------GRRDQKPRQ------ 110
Query 123 EKSAPSHHAAISESSEQIDGLQAPSYFDDPFAQFDQSYMGFEDAPQEGNLYDLLENVAQF 182
P + LY LL+ ++F
Sbjct 111 --------------------------------------------PTDSPLYPLLDAASEF 126
Query 183 YEKQL---PNSNKAQQYFKQRGLSAETIQFWRLGYAPEDWQHLEKAFPYDIEGLKQVG-- 237
Y + L P+ A Y K RGLS E + + LG+AP W +L K D K +
Sbjct 127 YRQALRSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLLKHLGADTLQQKVMIDA 186
Query 238 --LIRSSDSGRDFDLLRERVIFPIRDHKGRVVGFGGRALNDEIKPKYINSPDSEIFHKNQ 295
LI +++SG+ +D R+RV+FPIRD +GR++ FGGR L D+ KPKY+NSP++ +FHK Q
Sbjct 187 GLLIENAESGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGDD-KPKYLNSPETPVFHKGQ 245
Query 296 LLYGLYEGRKLKAK--DWLMVEGYMDVIALQQYGVYGAVATLGTASNADHLNTLFKQNSR 353
LYGLYE RK + ++VEGYMDVIAL Q G+ AVATLGTA++ +HL LF+
Sbjct 246 ELYGLYEARKHNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTATSEEHLKRLFRVVPS 305
Query 354 ITIAFDGDAAGQKAARRTLEIALPSLNDGRELKFFVLPKEHDPDSLIRREGLEHFQ-RLL 412
+ FDGD AG+KAA R LE L +L DGR +F LP+ DPDSL+R EG + F R+
Sbjct 306 VLFCFDGDQAGRKAAWRALESTLSNLQDGRRARFLFLPEGEDPDSLVRAEGTDAFMARIN 365
Query 413 EQAPLLSDFIFAHLTQQHDISTPEGKSQVMGELRELTELLPKQGSFRYLLTQSFREKLGL 472
+ + L+D+ F L + D + EGK+ + L E +P + R L+ +E GL
Sbjct 366 QHSQPLADYFFEQLGVEADPRSLEGKAHMATLAAPLIEKIP-GANLRQLMRNRLKEITGL 424
Query 473 GRKWTPQISHDASLSFNIQTKDEDF---AVAL-------LMQHPYLYIHFE 513
+ Q++ A + ++ D + A+A + QH Y +H E
Sbjct 425 DPQQVEQLAQQAPATSSMPDYDPGYDYDAMASYTPDYGDMPQHDYAPVHQE 475
Score = 22.3 bits (46), Expect = 1.1
Identities = 11/35 (31%), Positives = 17/35 (49%), Gaps = 0/35 (0%)
Query 498 AVALLMQHPYLYIHFEALRAFIDPQQLLAQILAII 532
A+ L+ HP L E F D + L +Q+L +
Sbjct 525 ALRTLLHHPLLAGKVEDASHFADEEHLYSQLLVAL 559
>P07362 DNA primase [Salmonella typhimurium (strain LT2 / SGSC1412
/ ATCC 700720)]
Length=581
Score = 324 bits (830), Expect = 5e-106
Identities = 187/477 (39%), Positives = 270/477 (57%), Gaps = 67/477 (14%)
Query 3 IPQHTIDQILDRTDLVELIGQRVKLKKTGRTYSGCCPFHQEKSPSFHVYRDKGYYHCFGC 62
IP+ I+ +L RTD+V+LI RVKLKK G+ Y CCPFH EK+PSF V +K +YHCFGC
Sbjct 5 IPRVFINDLLARTDIVDLIDVRVKLKKQGKNYHACCPFHNEKTPSFTVNGEKQFYHCFGC 64
Query 63 QANGNAIRFLMDIDGRNFIDVMQELSSKSGVELPKDNFEQKKLSYKRNTQKPEPKPVVNT 122
A+GNAI FLM+ D F V
Sbjct 65 GAHGNAIDFLMNYDKLEF--------------------------------------VETV 86
Query 123 EKSAPSHHAAISESSEQIDGLQAPSYFDDPFAQFDQSYMGFEDAPQEGNLYDLLENVAQF 182
E+ A H+ L+ P +Q ++ Q NLY L+ + F
Sbjct 87 EELAAMHN------------LEIPYEAGTGLSQIERH--------QRQNLYQLMNGLNDF 126
Query 183 YEKQL--PNSNKAQQYFKQRGLSAETIQFWRLGYAPEDWQHLEKAFPYDIEG---LKQVG 237
Y++ L P + A+ Y ++RGLSAE IQ + +G+AP W + K F + + L G
Sbjct 127 YQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDNKALLLDAG 186
Query 238 LIRSSDSGRDFDLLRERVIFPIRDHKGRVVGFGGRALNDEIKPKYINSPDSEIFHKNQLL 297
++ +++ G +D R RV+FPIRD +GRV+GFGGR L ++ PKY+NSP+++IFHK + L
Sbjct 187 MLVNNEQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVLGNDT-PKYLNSPETDIFHKGRQL 245
Query 298 YGLYEGRKLKAKDW--LMVEGYMDVIALQQYGVYGAVATLGTASNADHLNTLFKQNSRIT 355
YGLYE ++ A+ L+VEGYMDV+AL QY + AVA+LGT++ ADH++ LF+ + +
Sbjct 246 YGLYEAQQYSAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTADHMHMLFRATNNVI 305
Query 356 IAFDGDAAGQKAARRTLEIALPSLNDGRELKFFVLPKEHDPDSLIRREGLEHFQRLLEQA 415
+DGD AG+ AA R LE A+P + DGR+++F LP DPD+L+R+EG F+ +EQA
Sbjct 306 CCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVRKEGKAAFEARMEQA 365
Query 416 PLLSDFIFAHLTQQHDISTPEGKSQVMGELRELTELLPKQGSFRYLLTQSFREKLGL 472
LS F+F L Q D+S+P+G +Q+ L +P + R L Q+ KLG+
Sbjct 366 QPLSTFLFNSLLPQVDLSSPDGSTQLAALALPLINQVPGD-AHRIQLRQTLGLKLGI 421
Score = 21.6 bits (44), Expect = 1.9
Identities = 10/27 (37%), Positives = 14/27 (52%), Gaps = 0/27 (0%)
Query 561 IADIIERTDIQTLMNAPETADKHAKEY 587
I D++ RTDI L++ K K Y
Sbjct 10 INDLLARTDIVDLIDVRVKLKKQGKNY 36
>Q8FDG5 DNA primase [Escherichia coli O6:H1 (strain CFT073 / ATCC
700928 / UPEC)]
Length=581
Score = 323 bits (828), Expect = 1e-105
Identities = 188/477 (39%), Positives = 271/477 (57%), Gaps = 67/477 (14%)
Query 3 IPQHTIDQILDRTDLVELIGQRVKLKKTGRTYSGCCPFHQEKSPSFHVYRDKGYYHCFGC 62
IP+ I+ +L RTD+V+LI RVKLKK G+ + CCPFH EK+PSF V +K +YHCFGC
Sbjct 5 IPRVFINDLLARTDIVDLIDARVKLKKQGKNFHACCPFHNEKTPSFTVNGEKQFYHCFGC 64
Query 63 QANGNAIRFLMDIDGRNFIDVMQELSSKSGVELPKDNFEQKKLSYKRNTQKPEPKPVVNT 122
A+G N ID + VE
Sbjct 65 GAHG------------NAIDFLMNYDKLEFVE--------------------------TV 86
Query 123 EKSAPSHHAAISESSEQIDGLQAPSYFDDPFAQFDQSYMGFEDAPQEGNLYDLLENVAQF 182
E+ A H+ L+ P +Q ++ Q LY L++ + F
Sbjct 87 EELAAMHN------------LEVPFEAGSGPSQIERH--------QRQTLYQLMDGLNTF 126
Query 183 YEKQL--PNSNKAQQYFKQRGLSAETIQFWRLGYAPEDWQHLEKAF---PYDIEGLKQVG 237
Y++ L P + A+QY ++RGLS E I + +G+AP W ++ K F P + + L G
Sbjct 127 YQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLVDAG 186
Query 238 LIRSSDSGRDFDLLRERVIFPIRDHKGRVVGFGGRALNDEIKPKYINSPDSEIFHKNQLL 297
++ ++D GR +D RERV+FPIRD +GRV+GFGGR L ++ PKY+NSP+++IFHK + L
Sbjct 187 MLVTNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGNDT-PKYLNSPETDIFHKGRQL 245
Query 298 YGLYEGRKLKAKD--WLMVEGYMDVIALQQYGVYGAVATLGTASNADHLNTLFKQNSRIT 355
YGLYE ++ A+ L+VEGYMDV+AL QYG+ AVA+LGT++ ADH+ LF+ + +
Sbjct 246 YGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADHIQLLFRATNNVI 305
Query 356 IAFDGDAAGQKAARRTLEIALPSLNDGRELKFFVLPKEHDPDSLIRREGLEHFQRLLEQA 415
+DGD AG+ AA R LE ALP + DGR+L+F LP DPD+L+R+EG E F+ +EQA
Sbjct 306 CCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEARMEQA 365
Query 416 PLLSDFIFAHLTQQHDISTPEGKSQVMGELRELTELLPKQGSFRYLLTQSFREKLGL 472
LS F+F L Q D+STP+G++++ L +P + + R L Q KLG+
Sbjct 366 MPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGE-TLRIYLRQELGNKLGI 421
>P0ABS6 DNA primase [Escherichia coli O157:H7]
Length=581
Score = 323 bits (827), Expect = 1e-105
Identities = 188/477 (39%), Positives = 271/477 (57%), Gaps = 67/477 (14%)
Query 3 IPQHTIDQILDRTDLVELIGQRVKLKKTGRTYSGCCPFHQEKSPSFHVYRDKGYYHCFGC 62
IP+ I+ +L RTD+V+LI RVKLKK G+ + CCPFH EK+PSF V +K +YHCFGC
Sbjct 5 IPRVFINDLLARTDIVDLIDARVKLKKQGKNFHACCPFHNEKTPSFTVNGEKQFYHCFGC 64
Query 63 QANGNAIRFLMDIDGRNFIDVMQELSSKSGVELPKDNFEQKKLSYKRNTQKPEPKPVVNT 122
A+G N ID + VE
Sbjct 65 GAHG------------NAIDFLMNYDKLEFVE--------------------------TV 86
Query 123 EKSAPSHHAAISESSEQIDGLQAPSYFDDPFAQFDQSYMGFEDAPQEGNLYDLLENVAQF 182
E+ A H+ L+ P +Q ++ Q LY L++ + F
Sbjct 87 EELAAMHN------------LEVPFEAGSGPSQIERH--------QRQTLYQLMDGLNTF 126
Query 183 YEKQL--PNSNKAQQYFKQRGLSAETIQFWRLGYAPEDWQHLEKAF---PYDIEGLKQVG 237
Y++ L P + A+QY ++RGLS E I + +G+AP W ++ K F P + + L G
Sbjct 127 YQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDAG 186
Query 238 LIRSSDSGRDFDLLRERVIFPIRDHKGRVVGFGGRALNDEIKPKYINSPDSEIFHKNQLL 297
++ ++D GR +D RERV+FPIRD +GRV+GFGGR L ++ PKY+NSP+++IFHK + L
Sbjct 187 MLVTNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGNDT-PKYLNSPETDIFHKGRQL 245
Query 298 YGLYEGRKLKAKD--WLMVEGYMDVIALQQYGVYGAVATLGTASNADHLNTLFKQNSRIT 355
YGLYE ++ A+ L+VEGYMDV+AL QYG+ AVA+LGT++ ADH+ LF+ + +
Sbjct 246 YGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADHIQLLFRATNNVI 305
Query 356 IAFDGDAAGQKAARRTLEIALPSLNDGRELKFFVLPKEHDPDSLIRREGLEHFQRLLEQA 415
+DGD AG+ AA R LE ALP + DGR+L+F LP DPD+L+R+EG E F+ +EQA
Sbjct 306 CCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEARMEQA 365
Query 416 PLLSDFIFAHLTQQHDISTPEGKSQVMGELRELTELLPKQGSFRYLLTQSFREKLGL 472
LS F+F L Q D+STP+G++++ L +P + + R L Q KLG+
Sbjct 366 MPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGE-TLRIYLRQELGNKLGI 421
>P0ABS7 DNA primase [Shigella flexneri]
Length=581
Score = 323 bits (827), Expect = 1e-105
Identities = 188/477 (39%), Positives = 271/477 (57%), Gaps = 67/477 (14%)
Query 3 IPQHTIDQILDRTDLVELIGQRVKLKKTGRTYSGCCPFHQEKSPSFHVYRDKGYYHCFGC 62
IP+ I+ +L RTD+V+LI RVKLKK G+ + CCPFH EK+PSF V +K +YHCFGC
Sbjct 5 IPRVFINDLLARTDIVDLIDARVKLKKQGKNFHACCPFHNEKTPSFTVNGEKQFYHCFGC 64
Query 63 QANGNAIRFLMDIDGRNFIDVMQELSSKSGVELPKDNFEQKKLSYKRNTQKPEPKPVVNT 122
A+G N ID + VE
Sbjct 65 GAHG------------NAIDFLMNYDKLEFVE--------------------------TV 86
Query 123 EKSAPSHHAAISESSEQIDGLQAPSYFDDPFAQFDQSYMGFEDAPQEGNLYDLLENVAQF 182
E+ A H+ L+ P +Q ++ Q LY L++ + F
Sbjct 87 EELAAMHN------------LEVPFEAGSGPSQIERH--------QRQTLYQLMDGLNTF 126
Query 183 YEKQL--PNSNKAQQYFKQRGLSAETIQFWRLGYAPEDWQHLEKAF---PYDIEGLKQVG 237
Y++ L P + A+QY ++RGLS E I + +G+AP W ++ K F P + + L G
Sbjct 127 YQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDAG 186
Query 238 LIRSSDSGRDFDLLRERVIFPIRDHKGRVVGFGGRALNDEIKPKYINSPDSEIFHKNQLL 297
++ ++D GR +D RERV+FPIRD +GRV+GFGGR L ++ PKY+NSP+++IFHK + L
Sbjct 187 MLVTNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGNDT-PKYLNSPETDIFHKGRQL 245
Query 298 YGLYEGRKLKAKD--WLMVEGYMDVIALQQYGVYGAVATLGTASNADHLNTLFKQNSRIT 355
YGLYE ++ A+ L+VEGYMDV+AL QYG+ AVA+LGT++ ADH+ LF+ + +
Sbjct 246 YGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADHIQLLFRATNNVI 305
Query 356 IAFDGDAAGQKAARRTLEIALPSLNDGRELKFFVLPKEHDPDSLIRREGLEHFQRLLEQA 415
+DGD AG+ AA R LE ALP + DGR+L+F LP DPD+L+R+EG E F+ +EQA
Sbjct 306 CCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEARMEQA 365
Query 416 PLLSDFIFAHLTQQHDISTPEGKSQVMGELRELTELLPKQGSFRYLLTQSFREKLGL 472
LS F+F L Q D+STP+G++++ L +P + + R L Q KLG+
Sbjct 366 MPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGE-TLRIYLRQELGNKLGI 421
>P0ABS5 DNA primase [Escherichia coli (strain K12)]
Length=581
Score = 323 bits (827), Expect = 1e-105
Identities = 188/477 (39%), Positives = 271/477 (57%), Gaps = 67/477 (14%)
Query 3 IPQHTIDQILDRTDLVELIGQRVKLKKTGRTYSGCCPFHQEKSPSFHVYRDKGYYHCFGC 62
IP+ I+ +L RTD+V+LI RVKLKK G+ + CCPFH EK+PSF V +K +YHCFGC
Sbjct 5 IPRVFINDLLARTDIVDLIDARVKLKKQGKNFHACCPFHNEKTPSFTVNGEKQFYHCFGC 64
Query 63 QANGNAIRFLMDIDGRNFIDVMQELSSKSGVELPKDNFEQKKLSYKRNTQKPEPKPVVNT 122
A+G N ID + VE
Sbjct 65 GAHG------------NAIDFLMNYDKLEFVE--------------------------TV 86
Query 123 EKSAPSHHAAISESSEQIDGLQAPSYFDDPFAQFDQSYMGFEDAPQEGNLYDLLENVAQF 182
E+ A H+ L+ P +Q ++ Q LY L++ + F
Sbjct 87 EELAAMHN------------LEVPFEAGSGPSQIERH--------QRQTLYQLMDGLNTF 126
Query 183 YEKQL--PNSNKAQQYFKQRGLSAETIQFWRLGYAPEDWQHLEKAF---PYDIEGLKQVG 237
Y++ L P + A+QY ++RGLS E I + +G+AP W ++ K F P + + L G
Sbjct 127 YQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDAG 186
Query 238 LIRSSDSGRDFDLLRERVIFPIRDHKGRVVGFGGRALNDEIKPKYINSPDSEIFHKNQLL 297
++ ++D GR +D RERV+FPIRD +GRV+GFGGR L ++ PKY+NSP+++IFHK + L
Sbjct 187 MLVTNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGNDT-PKYLNSPETDIFHKGRQL 245
Query 298 YGLYEGRKLKAKD--WLMVEGYMDVIALQQYGVYGAVATLGTASNADHLNTLFKQNSRIT 355
YGLYE ++ A+ L+VEGYMDV+AL QYG+ AVA+LGT++ ADH+ LF+ + +
Sbjct 246 YGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADHIQLLFRATNNVI 305
Query 356 IAFDGDAAGQKAARRTLEIALPSLNDGRELKFFVLPKEHDPDSLIRREGLEHFQRLLEQA 415
+DGD AG+ AA R LE ALP + DGR+L+F LP DPD+L+R+EG E F+ +EQA
Sbjct 306 CCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEARMEQA 365
Query 416 PLLSDFIFAHLTQQHDISTPEGKSQVMGELRELTELLPKQGSFRYLLTQSFREKLGL 472
LS F+F L Q D+STP+G++++ L +P + + R L Q KLG+
Sbjct 366 MPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGE-TLRIYLRQELGNKLGI 421
>P57029 DNA primase [Neisseria meningitidis serogroup B (strain
MC58)]
Length=590
Score = 321 bits (822), Expect = 1e-104
Identities = 217/645 (34%), Positives = 329/645 (51%), Gaps = 78/645 (12%)
Query 3 IPQHTIDQILDRTDLVELIGQRVKLKKTGRTYSGCCPFHQEKSPSFHVYRDKGYYHCFGC 62
IP ID++L +TD+V++I ++V LKK G Y CCPFH+EK+PSF V K +YHCF C
Sbjct 2 IPSDFIDELLAKTDIVDIIDEQVPLKKGGANYMACCPFHKEKTPSFSVSPTKQFYHCFSC 61
Query 63 QANGNAIRFLMDIDGRNFIDVMQELSSKSGVELPKDNFEQKKLSYKRNTQKPEPKPVVNT 122
A+G+AI F+M+ G +F + +Q L+ + G+ + P V+
Sbjct 62 GAHGSAIGFVMEHQGLSFPEAVQFLADRVGMVV----------------------PKVHG 99
Query 123 EKSAPSHHAAISESSEQIDGLQAPSYFDDPFAQFDQSYMGFEDAPQEGNLYDLLENVAQF 182
+ P A + + ++ A + A F
Sbjct 100 QNDNPEVRAERKKKQQTLEETTAAA--------------------------------ADF 127
Query 183 YEKQLPNSNKAQQYFKQRGLSAETIQFWRLGYAPEDWQHLEKAF-PYDIEGLKQVGLIRS 241
Y +QL + A+ Y +RGLSAE I + LGYAP+ WQ L + F PY L G++
Sbjct 128 YAQQLKFNPAAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLTQVFQPYPNTALVDTGMVID 187
Query 242 SDSGRDFDLLRERVIFPIRDHKGRVVGFGGRALNDEIKPKYINSPDSEIFHKNQLLYGLY 301
++ GR +D R R++FPIR+ +G+V+GFGGR L+D KPKY+NSPD+ +F K + LYGLY
Sbjct 188 NE-GRHYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLNSPDTPLFDKGKNLYGLY 245
Query 302 EGRKL--KAKDWLMVEGYMDVIALQQYGVYGAVATLGTASNADHLNTLFKQNSRITIAFD 359
EGR +A L+VEGYMDV+AL Q+GV VA LGTA+ A+H+ L +Q I FD
Sbjct 246 EGRAAVKEAGRILVVEGYMDVVALAQFGVGYGVAALGTATTAEHVKILMRQADSIYFCFD 305
Query 360 GDAAGQKAARRTLEIALPSLNDGRELKFFVLPKEHDPDSLIRREGLEHFQ-RLLEQAPLL 418
GD+AG+KAA R LE ALP L D + L F LP+EHDPDS IR G F+ LL Q+ L
Sbjct 306 GDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRAYGKAQFEDALLNQSKPL 365
Query 419 SDFIFAHLTQQHDISTPEGKSQVMGELRELTELLPKQGSFRYLLTQSFREKLGLGRKWTP 478
S++ + HL+ ++T EGK++++ L + + YLL Q E +G+
Sbjct 366 SEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQITAP-ALAYLLKQRLSELVGIDPDNLA 424
Query 479 QISHDASLSFNIQTKDEDFAVALLMQHPYLYIHFEALR---------AFIDPQQLLA--- 526
Q+ + +++ K+ + Q L + +R A+ID LA
Sbjct 425 QLLGQEAPKRHVKQKNYKLPPISVKQPVMLTLVQRQIRSLLINPDWAAYIDLPDYLALDG 484
Query 527 --QILAIIDRVFDELPDDQELATYYVLGACNQFSHEIADIIERTDIQTLMNAPETADKHA 584
LA + E A + + I I T MN+ ++++
Sbjct 485 DFACLANLAESIKNHAAVPETAQVLEYMRGSPYEETITRIFHSTHQSEEMNS--SSEEDC 542
Query 585 KEYALGLKEKYLRQKLKAPISLIESRNLRQQLNELSKQINLRLLS 629
+ + +G+K K L + + I ++ ++L+ LNE K++ L LL+
Sbjct 543 ENFQIGMK-KLLNELKYSQIETLKQKSLQSGLNESEKKLLLSLLT 586
>P57028 DNA primase [Neisseria meningitidis serogroup A / serotype
4A (strain DSM 15465 / Z2491)]
Length=590
Score = 314 bits (805), Expect = 3e-102
Identities = 216/648 (33%), Positives = 329/648 (51%), Gaps = 84/648 (13%)
Query 3 IPQHTIDQILDRTDLVELIGQRVKLKKTGRTYSGCCPFHQEKSPSFHVYRDKGYYHCFGC 62
IP ID++L +TD+V++I ++V LKK G Y CCPFH+EK+PSF V K +YHCF C
Sbjct 2 IPSDFIDELLAKTDIVDIIDEQVPLKKGGANYMACCPFHKEKTPSFSVSPTKQFYHCFSC 61
Query 63 QANGNAIRFLMDIDGRNFIDVMQELSSKSGVELPKDNFEQKKLSYKRNTQKPEPKPVVNT 122
A+G+AI F+M+ G +F + +Q L+ + G+ + P V+
Sbjct 62 GAHGSAIGFVMEHQGLSFPEAVQFLADRVGMVV----------------------PKVHG 99
Query 123 EKSAPSHHAAISESSEQIDGLQAPSYFDDPFAQFDQSYMGFEDAPQEGNLYDLLENVAQF 182
+ P A + + ++ A + A F
Sbjct 100 QNDNPEVRAERKKKQQTLEETTAAA--------------------------------ADF 127
Query 183 YEKQLPNSNKAQQYFKQRGLSAETIQFWRLGYAPEDWQHLEKAF-PYDIEGLKQVGLIRS 241
Y +QL + A+ Y +RGLSAE I + LGYAP+ WQ L + F PY L G++
Sbjct 128 YAQQLKFNPAAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLTQVFQPYPNTALVDTGMVID 187
Query 242 SDSGRDFDLLRERVIFPIRDHKGRVVGFGGRALNDEIKPKYINSPDSEIFHKNQLLYGLY 301
++ GR +D R R++FPIR+ +G+V+GFGGR L+D KPKY+NSPD+ +F K + LYGLY
Sbjct 188 NE-GRHYDRFRHRIMFPIRNPRGQVIGFGGRVLDDS-KPKYLNSPDTPLFDKGKNLYGLY 245
Query 302 EGRKL--KAKDWLMVEGYMDVIALQQYGVYGAVATLGTASNADHLNTLFKQNSRITIAFD 359
EGR +A L+VEGYMDV+AL Q+GV VA LGTA+ A+H+ L +Q I FD
Sbjct 246 EGRAAVKEAGRILVVEGYMDVVALAQFGVGYGVAALGTATTAEHVKILMRQADSIYFCFD 305
Query 360 GDAAGQKAARRTLEIALPSLNDGRELKFFVLPKEHDPDSLIRREGLEHFQ-RLLEQAPLL 418
GD+AG+KAA R LE ALP L D + L F LP+EHDPDS IR G F+ LL Q+ L
Sbjct 306 GDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRAYGKAQFEDALLNQSKPL 365
Query 419 SDFIFAHLTQQHDISTPEGKSQVMGELRELTELLPKQGSFRYLLTQSFREKLGLGRKWTP 478
S++ + HL+ ++T EGK++++ L + + YLL Q E +G+
Sbjct 366 SEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQITAP-ALAYLLKQRLSELVGIDPDNLA 424
Query 479 QISHDASLSFNIQTKDEDFAVALLMQHPYLYIHFEALR---------AFIDPQQLLAQIL 529
Q+ + +++ K+ + Q + +R A+ID LA
Sbjct 425 QLLGQEAPKRHVKQKNYKLPPISVKQPVMPTLVQRQIRSLLINPDWAAYIDLPDYLA--- 481
Query 530 AIIDRVFDELPDDQELATYY--VLGACNQFSHEIADIIERTDIQTLMNAPET------AD 581
+D F L + E + V H E T + +A ++ +
Sbjct 482 --LDGDFACLANLAETIKNHPSVPATAQVLEHMRGSPYEETINRIFRSALQSEEMEGGGE 539
Query 582 KHAKEYALGLKEKYLRQKLKAPISLIESRNLRQQLNELSKQINLRLLS 629
+ + + +G+K K L + + I ++ ++L+ LNE K++ L LL+
Sbjct 540 EDCENFQIGIK-KLLNELKYSQIEALKQKSLQSGLNESEKKLLLSLLT 586
>Q9CLI9 DNA primase [Pasteurella multocida (strain Pm70)]
Length=582
Score = 301 bits (771), Expect = 3e-97
Identities = 185/478 (39%), Positives = 269/478 (56%), Gaps = 67/478 (14%)
Query 2 AIPQHTIDQILDRTDLVELIGQRVKLKKTGRTYSGCCPFHQEKSPSFHVYRDKGYYHCFG 61
+IP+ ID +L +TD+VEL+ RVKLKK GR Y CCPFH EK+PSF V + K +YHCFG
Sbjct 4 SIPRTFIDDLLAKTDIVELVNSRVKLKKAGRDYQACCPFHHEKTPSFTVSQKKQFYHCFG 63
Query 62 CQANGNAIRFLMDIDGRNFIDVMQELSSKSGVELPKDN---FEQKKLSYKRNTQKPEPKP 118
C A+GNAI FLM+ D F++ ++EL+ G+E+P++N F K+++
Sbjct 64 CGAHGNAISFLMEYDKLEFVEAIEELAGMLGLEIPRENKPHFHGKQIN------------ 111
Query 119 VVNTEKSAPSHHAAISESSEQIDGLQAPSYFDDPFAQFDQSYMGFEDAPQEGNLYDLLEN 178
+ T+++ I++ +Q P+ QSY+ Q+ L E
Sbjct 112 -LQTKRNLYELMQEIAQFYQQQLAQHIPA----------QSYL------QQRGLSP--EV 152
Query 179 VAQFYEKQLPNSNKAQQYFKQRGLSAETIQFWRLGYAPEDWQHLEKAFPYDIEGLKQVGL 238
+++F +PNS A R G ED Q L +D+ G+
Sbjct 153 ISRFQIGFVPNSFDA--------------VLQRFGQQKEDQQKL-----FDL------GM 187
Query 239 IRSSDSGRDFDLLRERVIFPIRDHKGRVVGFGGRALNDEIKPKYINSPDSEIFHKNQLLY 298
+ S+ G+ +D R R++FPIRD +G+ + FGGR L DE KPKY+NSP+S +HK LY
Sbjct 188 LSRSEQGKIYDRFRHRIMFPIRDRRGKTIAFGGRVLGDE-KPKYLNSPESATYHKGNELY 246
Query 299 GLYEGRKLKAKD----WLMVEGYMDVIALQQYGVYGAVATLGTASNADHLNTLFKQNSRI 354
GLYE L+A + L+VEGYMDV+AL Q+GV AVA+LGTA+ A+ + LF+ +
Sbjct 247 GLYEA--LQANESPEMLLVVEGYMDVVALAQFGVDYAVASLGTATTAEQIQLLFRSTEQA 304
Query 355 TIAFDGDAAGQKAARRTLEIALPSLNDGRELKFFVLPKEHDPDSLIRREGLEHFQRLLEQ 414
+DGD AG++AA R E ALP L DGR+LKF LP DPDS IR+ G F++ +++
Sbjct 305 ICCYDGDRAGREAAWRAFENALPYLEDGRQLKFVFLPDGEDPDSFIRQHGKASFEQYMQK 364
Query 415 APLLSDFIFAHLTQQHDISTPEGKSQVMGELRELTELLPKQGSFRYLLTQSFREKLGL 472
A LS+F+F L Q D S+ EGK+++ L + +P R L + +KLG+
Sbjct 365 ALSLSEFLFTSLAPQVDFSSKEGKTKLAALAVPLIKKIPGD-MLRLSLRNTLAQKLGI 421
Score = 21.6 bits (44), Expect = 1.9
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 0/27 (0%)
Query 561 IADIIERTDIQTLMNAPETADKHAKEY 587
I D++ +TDI L+N+ K ++Y
Sbjct 10 IDDLLAKTDIVELVNSRVKLKKAGRDY 36
>P71481 DNA primase [Legionella pneumophila]
Length=576
Score = 268 bits (684), Expect = 1e-84
Identities = 145/347 (42%), Positives = 210/347 (61%), Gaps = 9/347 (3%)
Query 171 NLYDLLENVAQFYEKQLP-NSNKAQQYFKQRGLSAETIQFWRLGYAPEDWQHLEKAFPYD 229
NLY+L+ V+Q+Y+K+L N A Y + RGLS E + + LGYAPE W +LEKAFP +
Sbjct 110 NLYNLMSEVSQYYQKKLKYNGQVAIDYLRNRGLSGEIAKRYHLGYAPEGWHNLEKAFPNN 169
Query 230 IEGLKQVGLIRSSDSGRDFDLLRERVIFPIRDHKGRVVGFGGRALNDEIKPKYINSPDSE 289
L G++ SD G+ +D R R++FPI D GRV+GFGGR L+ + KPKY+NSP++
Sbjct 170 QRELLSTGMLIKSDEGKIYDRYRNRIMFPIHDRNGRVIGFGGRVLDKDQKPKYLNSPETV 229
Query 290 IFHKNQLLYGLYE--GRKLKAKDWLMVEGYMDVIALQQYGVYGAVATLGTASNADHLNTL 347
+F K++ LYGL++ ++ ++VEGYMDVIAL Q+G++ VATLGTA++ H+ L
Sbjct 230 LFQKSRELYGLHQVLSQQKNPDSIIVVEGYMDVIALAQHGIFNVVATLGTATSTFHIQLL 289
Query 348 FKQNSRITIAFDGDAAGQKAARRTLEIALPSLNDGRELKFFVLPKEHDPDSLIRREGLEH 407
K + FDGDAAG++AA R LE +LP LN G + F LP EHDPDSL+R EG
Sbjct 290 AKHTKHLIFCFDGDAAGKQAAWRALESSLPHLNAGLDAGFIFLPNEHDPDSLVRNEGKNG 349
Query 408 FQRLLEQAPLLSDFIFAHLTQQHDISTPEGKSQVMGELRELTELLPKQGSFRYLLTQSFR 467
F LL+QA L F F L++ ++S P GK+Q++ ++ + + +GS++ LL
Sbjct 350 FLELLQQATPLHRFFFDTLSKDINLSNPAGKTQLINAVKPYLQKM-VEGSYKQLLIDDLS 408
Query 468 -----EKLGLGRKWTPQISHDASLSFNIQTKDEDFAVALLMQHPYLY 509
E L T + + I A+ALL+Q+P +Y
Sbjct 409 RLTHIESHRLTNLITDKSESKPEVQAAISRSPLRIAIALLLQNPEIY 455
Score = 105 bits (263), Expect = 7e-27
Identities = 52/104 (50%), Positives = 70/104 (67%), Gaps = 1/104 (1%)
Query 3 IPQHTIDQILDRTDLVELIGQRVKLKKTGRTYSGCCPFHQEKSPSFHVYRDKGYYHCFGC 62
IPQ ID +L+RTDLVELI V LKK G ++ CCPFH EK+PSF+V K +YHCFGC
Sbjct 5 IPQPFIDDLLNRTDLVELIDGYVPLKKRGNSHIACCPFHNEKTPSFNVVAKKQFYHCFGC 64
Query 63 QANGNAIRFLMDIDGRNFIDVMQELSSKSGVELPKDNFEQKKLS 106
A+GNAI F+M+ + F D ++ L ++ V+ P+D +K S
Sbjct 65 GASGNAISFVMNYLNQGFTDAVETL-RRAWVKCPRDGTGEKHKS 107
Score = 21.6 bits (44), Expect = 1.9
Identities = 25/96 (26%), Positives = 40/96 (42%), Gaps = 22/96 (23%)
Query 119 VVNTEKSAPSHHAAISESSEQIDG---LQAPSYFDDPFAQFDQSYMGFEDAPQEGNLYDL 175
+ + +S P AAIS S +I LQ P + Q + + + E + L
Sbjct 422 ITDKSESKPEVQAAISRSPLRIAIALLLQNPEIYSIAIQQINPALL------HEQEHHIL 475
Query 176 LENVAQFYEKQLPNSNKAQQYFKQRGLSAETIQFWR 211
L+ + Q +K PN+N +A I+FWR
Sbjct 476 LKLLQQLKDK--PNAN-----------TATLIEFWR 498
>P32000 DNA primase [Buchnera aphidicola subsp. Schizaphis graminum
(strain Sg)]
Length=579
Score = 262 bits (669), Expect = 2e-82
Identities = 161/517 (31%), Positives = 267/517 (52%), Gaps = 70/517 (14%)
Query 3 IPQHTIDQILDRTDLVELIGQRVKLKKTGRTYSGCCPFHQEKSPSFHVYRDKGYYHCFGC 62
IP++ I+++L RT++VELI R+KLKK G+ Y CPFH +K+PSF V +K +Y+CFGC
Sbjct 5 IPKYFINELLFRTNIVELIETRIKLKKNGKNYQTHCPFHNDKTPSFTVSYEKQFYYCFGC 64
Query 63 QANGNAIRFLMDIDGRNFIDVMQELSSKSGVELPKDNFEQKKLSYKRNTQKPEPKPVVNT 122
A+G N ID + + + VE +
Sbjct 65 SAHG------------NAIDFLINYDNLNFVE--------------------------SI 86
Query 123 EKSAPSHHAAISESSEQIDGLQAPSYFDDPFAQFDQSYMGFEDAPQEGNLYDLLENVAQF 182
E+ A H I FD + Y+ ++ LY L++ +++
Sbjct 87 EELATIHSIEIP--------------FDKKGTIEKKIYL------KKQKLYFLMDKMSKL 126
Query 183 YEKQLPNSNKAQQYFKQRGLSAETIQFWRLGYAPEDWQHLEKAFPY--DIE-GLKQVGLI 239
Y+K + +N A +Y +RG++ I F+ +G++ W K F D E L +I
Sbjct 127 YQKNIIFTNSANKYLTERGINKNMIDFFCIGFSSNKWDLFSKQFNIKKDFEKDLLHYKII 186
Query 240 RSSDSGRDFDLLRERVIFPIRDHKGRVVGFGGRALNDEIKPKYINSPDSEIFHKNQLLYG 299
++ +G +D + R++FPI D GR++ FGGR++ + I PKY+NS +++IFHK + +YG
Sbjct 187 STNKNGYIYDTFQGRIVFPIHDQHGRIISFGGRSITNNILPKYLNSHENDIFHKGKQIYG 246
Query 300 LYEGRKL--KAKDWLMVEGYMDVIALQQYGVYGAVATLGTASNADHLNTLFKQNSRITIA 357
LY+ +K K K L+VEGY+DVI L QY + V++LGT+ +H+ LF+ + +
Sbjct 247 LYQVKKKHSKPKYLLVVEGYIDVIMLTQYNIEYVVSSLGTSITKEHIQILFRHTNTVIYC 306
Query 358 FDGDAAGQKAARRTLEIALPSLNDGRELKFFVLPKEHDPDSLIRREGLEHFQRLLEQAPL 417
+DGD AG+ A+ RTL+IALP ++D + +KF +LP DPD++I++EG + FQ ++ A
Sbjct 307 YDGDDAGRNASWRTLKIALPYISDKKNIKFIILPNNEDPDTIIKKEGQKKFQLRIDNALT 366
Query 418 LSDFIFAHLTQQHDISTPEGKSQVMGELRELTELLPKQGSFRYLLTQSFREKLGLGRKWT 477
+S F F ++ + D+S+ + K + L + + R L Q +G+ +
Sbjct 367 MSKFFFKNILKNVDLSSDDDKFHLSVRALPLINCI-SSDTIRIYLRQILARTIGIVDDYQ 425
Query 478 ------PQISHDASLSFNIQTKDEDFAVALLMQHPYL 508
+ SL F I+ + LL+Q+P L
Sbjct 426 FEKFLYEKERKKKSLQFQIKHTPMRTLIGLLIQNPNL 462
>Q9I5W0 DNA primase [Pseudomonas aeruginosa (strain ATCC 15692
/ DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS
101 / PAO1)]
Length=664
Score = 249 bits (635), Expect = 1e-76
Identities = 148/374 (40%), Positives = 221/374 (59%), Gaps = 21/374 (6%)
Query 167 PQEGNLYDLLENVAQFYEKQL---PNSNKAQQYFKQRGLSAETIQFWRLGYAPEDWQHLE 223
P + LY LL A+FY++ L P A Y K RGL+ E + + LG+AP W +L
Sbjct 112 PTDSPLYPLLSAAAEFYKQALKSHPARKAAVNYLKGRGLTGEIARDFGLGFAPPGWDNLL 171
Query 224 KAFPYD---IEGLKQVGL-IRSSDSGRDFDLLRERVIFPIRDHKGRVVGFGGRALNDEIK 279
K D ++ + GL + +SD+G+ +D R+RV+FPIRD +GR++ FGGR L D+ K
Sbjct 172 KHLGGDNLQLKAMLDAGLLVENSDTGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGDD-K 230
Query 280 PKYINSPDSEIFHKNQLLYGLYEGRKLKAKDW---LMVEGYMDVIALQQYGVYGAVATLG 336
PKY+NSP++ +FHK Q LYGLYE R+ K +D ++VEGYMDVIAL Q G+ AVATLG
Sbjct 231 PKYLNSPETPVFHKGQELYGLYEARQ-KNRDLDEIMVVEGYMDVIALAQQGIRNAVATLG 289
Query 337 TASNADHLNTLFKQNSRITIAFDGDAAGQKAARRTLEIALPSLNDGRELKFFVLPKEHDP 396
TA++ +H+ LF+ I FDGD AG+KAA R LE LP+L DG+ ++F LP+ DP
Sbjct 290 TATSEEHIKRLFRLVPSILFCFDGDQAGRKAAWRALESVLPNLQDGKRVRFLFLPEGEDP 349
Query 397 DSLIRREGLEHFQ-RLLEQAPLLSDFIFAHLTQQHDISTPEGKSQVMGELRELTELLPKQ 455
DSL+R EG + F+ R+ +QA L+++ F L + D +T EGK+ + L E +P
Sbjct 350 DSLVRAEGEDAFRARITQQAQPLAEYFFQQLMLEADPATLEGKAHLATLAAPLLEKIP-G 408
Query 456 GSFRYLLTQSFREKLGLGRKWTPQISHDASL-------SFNIQTKDEDFAVALLMQHPYL 508
+ R L+ Q E GL + Q++H + + + D+ FA + ++
Sbjct 409 NNLRLLMRQRLSEITGLSGENIGQLAHHSPPPSSMDHGASGVLDGDDYFAASAYYENEPS 468
Query 509 YIHFEALRAFIDPQ 522
+ F+A +++ Q
Sbjct 469 HAPFDAAPGYVEAQ 482
Score = 120 bits (301), Expect = 2e-31
Identities = 52/112 (46%), Positives = 80/112 (71%), Gaps = 0/112 (0%)
Query 3 IPQHTIDQILDRTDLVELIGQRVKLKKTGRTYSGCCPFHQEKSPSFHVYRDKGYYHCFGC 62
IPQ ID +L+RTD+VE++ R++LKKTG+ YS CCPFH+EK+PSF V DK +Y+CFGC
Sbjct 5 IPQSFIDDLLNRTDIVEVVSSRIQLKKTGKNYSACCPFHKEKTPSFTVSPDKQFYYCFGC 64
Query 63 QANGNAIRFLMDIDGRNFIDVMQELSSKSGVELPKDNFEQKKLSYKRNTQKP 114
A GNA+ F+MD D F ++EL+ ++G+++P++ + + ++ T P
Sbjct 65 GAGGNALGFVMDHDQLEFPQAVEELAKRAGMDVPREERGGRGHTPRQPTDSP 116
Score = 20.4 bits (41), Expect = 4.5
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 0/28 (0%)
Query 561 IADIIERTDIQTLMNAPETADKHAKEYA 588
I D++ RTDI ++++ K K Y+
Sbjct 10 IDDLLNRTDIVEVVSSRIQLKKTGKNYS 37
>P33655 DNA primase [Clostridium acetobutylicum (strain ATCC 824
/ DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)]
Length=596
Score = 244 bits (624), Expect = 1e-75
Identities = 193/653 (30%), Positives = 311/653 (48%), Gaps = 100/653 (15%)
Query 1 MAIPQHTIDQILDRTDLVELIGQRVKLKKTGRTYSGCCPFHQEKSPSFHVYRDKGYYHCF 60
+ I + I ++ D D+V+++ ++VKLK+TGR YSG CPFH EK+PSF V +DK Y CF
Sbjct 4 LIIAEDIIQKVKDLNDIVDIVSEKVKLKRTGRNYSGLCPFHHEKTPSFSVSQDKQIYKCF 63
Query 61 GCQANGNAIRFLMDIDGRNFIDVMQELSSKSGVELPKDNFEQKKLSYKRNTQKPEPKPVV 120
GC GN I F+M +NF S VE K ++ ++ N K K
Sbjct 64 GCGEAGNVITFVMKT--KNF----------SFVEAVKYLADKVNITIDDNKDKYYAK--- 108
Query 121 NTEKSAPSHHAAISESSEQIDGLQAPSYFDDPFAQFDQSYMGFEDAPQEGNLYDLLENVA 180
N EK +D+ LY + A
Sbjct 109 NKEK-------------------------------YDK-------------LYSMNVEAA 124
Query 181 QFYEKQLPNSNKAQQYFKQRGLSAETIQFWRLGYAPEDWQHL---EKAFPYDIEGLKQVG 237
+++ + L +++KA++YF RG++ +T++ + LGYA +DW+ L K+ Y L + G
Sbjct 125 RYFFRNLDSNSKAKKYFLDRGINQKTMRRFGLGYAKDDWRQLLSFMKSKGYTELELIEAG 184
Query 238 LIRSSDSGRDFDLLRERVIFPIRDHKGRVVGFGGRALNDEIKPKYINSPDSEIFHKNQLL 297
LI + +D R RVIFP+ D+KG+V+GFGGR L+D KPKY+NSP+++IF K L
Sbjct 185 LIVQKNKAV-YDRFRNRVIFPVFDYKGKVIGFGGRVLDDS-KPKYLNSPETKIFKKGTNL 242
Query 298 YGLYEGRKLKAKDWLM-VEGYMDVIALQQYGVYGAVATLGTASNADHLNTLFKQNSRITI 356
YGL K D ++ VEGYMD I+L QYG+ VA+LGTA D L + S++ I
Sbjct 243 YGLNFAVKNNIGDTIIIVEGYMDCISLHQYGINNVVASLGTALTKDQAKLLKRYASKVVI 302
Query 357 AFDGDAAGQKAARRTLEIALPSLNDGRELKFFVLPKEHDPDSLIRREGLEHFQRLLEQAP 416
++D D AGQ A R +I + G ++K +P DPD +R+ G E F RL+E A
Sbjct 303 SYDADTAGQAATLRGFDILREA---GFDIKIIKIPDGKDPDEFVRKNGKEAFMRLVENAV 359
Query 417 LLSDFIFAHLTQQHDISTPEGKSQVMGELRELTELLPKQGSFRYLLTQSFREKLGLGRKW 476
+ D+ + ++ E + + ++ E+ E L Y+ + +K G+ +
Sbjct 360 SIIDYRINRAFENVNLKDSESVIKYVKDISEIIEELDPVEKDVYI--KKISDKTGIREQA 417
Query 477 T-PQISHDASLSFN-------------------IQTKDEDFAVALLMQHPYLYIHFEALR 516
IS D S N K E + + L+++H + + E+
Sbjct 418 IYDLISTDIQKSGNNIEKMNKNSNYGQNLYVESAHVKSERYLLRLMIEHKDIRSYIESKI 477
Query 517 AFID-PQQLLAQILAIIDRVFDELPDDQELATYYVLGACN--QFSHEIADIIERTDIQTL 573
+ D + +I II D L D + ++ C+ + S EI I E+ + +
Sbjct 478 SADDLIMESHKKIYNIILNFEDNLSSDLKSKFGFIESRCDDGESSSEIVKIEEQNIMLSE 537
Query 574 MNAPETADKHAKEYALGLKEKYL---RQKLKAPISLIESRNLRQQLNELSKQI 623
N + D ++ +K+ L ++K+ + I +E + L + EL K++
Sbjct 538 NNVKDLVD----DFITNIKKFRLEESKKKIMSEIKGLEEKGLFDETIELIKRM 586
>P74893 DNA primase [Synechococcus elongatus (strain ATCC 33912
/ PCC 7942 / FACHB-805)]
Length=694
Score = 214 bits (546), Expect = 8e-64
Identities = 150/462 (32%), Positives = 231/462 (50%), Gaps = 74/462 (16%)
Query 7 TIDQILDRTDLVELIGQRVKLKKTGRTYSGCCPFHQEKSPSFHVYRDKGYYHCFGCQANG 66
TI + +R D+V+++ ++V LKK G+ + G CPFH +KSPSF V K +Y+CF C A G
Sbjct 10 TIAAVKERADIVDIVSEQVVLKKRGKDFVGLCPFHDDKSPSFTVSPAKQFYYCFSCGAGG 69
Query 67 NAIRFLMDIDGRNFIDVMQELSSKSGVELPKDNFEQKKLSYKRNTQKPEPKPVVNTEKSA 126
N I+FLM EL K +F + L + Q P V +
Sbjct 70 NPIKFLM--------------------ELGKQSFSEVVLDLAKRYQVPVRTLEVQQHQ-- 107
Query 127 PSHHAAISESSEQIDGLQAPSYFDDPFAQFDQSYMGFEDAPQEGNLYDLLENVAQFYEKQ 186
E Q+ + LY++L QFYE+
Sbjct 108 --------ELQRQLS--------------------------RRERLYEVLAVATQFYEQS 133
Query 187 L--PNSNKAQQYFKQ-RGLSAETIQFWRLGYAPEDWQHL------EKAFPYDIEGLKQVG 237
L P A Y ++ R L TIQ ++LGYAP W L +K FP D+ +++ G
Sbjct 134 LRRPEGAAALDYLRRSRQLQESTIQKFQLGYAPAQWASLATHLIEQKRFPADL--VEEAG 191
Query 238 LIRSSDSGRDF-DLLRERVIFPIRDHKGRVVGFGGRALNDEIKPKYINSPDSEIFHKNQL 296
L+ + +G+ + D R+R++ PI D +GRVVGFGGR L E +PKY+NSP++ +F K +L
Sbjct 192 LVVARRNGQGYYDRFRDRLMIPIHDLQGRVVGFGGRTLTGE-EPKYLNSPETTLFEKGKL 250
Query 297 LYGLYEGRKLKAK--DWLMVEGYMDVIALQQYGVYGAVATLGTASNADHLNTL--FKQNS 352
L+GL + R AK ++VEGY DVIAL G+ AVA+LGTA + + L + +++
Sbjct 251 LFGLDKARAAIAKQDQAVVVEGYFDVIALHAAGIDHAVASLGTALSRQQVKLLSRYSESN 310
Query 353 RITIAFDGDAAGQKAARRTL-EIALPSLNDGRELKFFVLPKEHDPDSLIRREGLEHFQRL 411
+I + FD D AG KAA R + E+ + +L+ LP D D ++R + ++ L
Sbjct 311 QIVLNFDADRAGAKAAERAIGEVEDLAYQGQVQLRVLNLPGGKDADEYLQRHSVADYREL 370
Query 412 LEQAPLLSDFIFAHLTQQHDISTPEGKSQVMGELRELTELLP 453
L ++PL D+ L + ++ + V+ + +L LP
Sbjct 371 LARSPLWLDWQIDQLLRDRNLDQADQFQAVVQAIVQLLGKLP 412
>P47762 DNA primase [Listeria monocytogenes serovar 1/2a (strain
ATCC BAA-679 / EGD-e)]
Length=626
Score = 211 bits (538), Expect = 3e-63
Identities = 128/420 (30%), Positives = 215/420 (51%), Gaps = 64/420 (15%)
Query 3 IPQHTIDQILDRTDLVELIGQRVKLKKTGRTYSGCCPFHQEKSPSFHVYRDKGYYHCFGC 62
IP+ IDQ+ ++ D+V++IG V+LKK GR YSG CPFH EK+PSF V +K +HCFGC
Sbjct 4 IPEEVIDQVRNQADIVDIIGNYVQLKKQGRNYSGLCPFHGEKTPSFSVSPEKQIFHCFGC 63
Query 63 QANGNAIRFLMDIDGRNFIDVMQELSSKSGVELPKDNFEQKKLSYKRNTQKPEPKPVVNT 122
GN FLM+ DG F++ +++++ S +++ + PE + N
Sbjct 64 GKGGNVFSFLMEHDGLTFVESVKKVADMSHLDVA--------------IELPEERDTSNL 109
Query 123 EKSAPSHHAAISESSEQIDGLQAPSYFDDPFAQFDQSYMGFEDAPQEGNLYDLLENVAQF 182
K SE+++ ++ ++ L + +
Sbjct 110 PKET-------SETAKMVE------------------------------MHQLTAKLYHY 132
Query 183 YEKQLPNSNKAQQYFKQRGLSAETIQFWRLGYAPEDW----QHLEKAFPYDIEGLKQVGL 238
+ A Y K+RG+S + + +++G+AP LEK D++ GL
Sbjct 133 ILMETEEGTAALTYLKERGMSEQMMTTFQIGFAPNHHATITSFLEKR-GMDLQLAGAAGL 191
Query 239 IRSSDSGRDFDLLRERVIFPIRDHKGRVVGFGGRALNDEIKPKYINSPDSEIFHKNQLLY 298
+ D G+ D R R++FPI + +G+++ F GR + + PKY+NSP++ +F+K ++L+
Sbjct 192 LSERDDGQMVDRFRNRIMFPITNDRGQIIAFSGRLFDRDDGPKYLNSPETPVFNKRRILF 251
Query 299 GLYEGRKL--KAKDWLMVEGYMDVIALQQYGVYGAVATLGTASNADHLNTLFKQNSRITI 356
E R+ K ++ ++EG+MDVI+ ++ GV AVA++GT+ +H + + + +R I
Sbjct 252 HFSEARQAIRKQEEITLMEGFMDVISAEEAGVQNAVASMGTSLTEEHADLIKRLTNRAII 311
Query 357 AFDGDAAGQKAARRTLEIALPSLNDGRELKFFV--LPKEHDPDSLIRREGLEHFQRLLEQ 414
+DGD AG +AA + A L + L FV LP DPD IR G E F+ + +Q
Sbjct 312 CYDGDRAGIEAAYK----AGTLLVERNRLDVFVLQLPAGKDPDDFIRASGPEKFKEVYKQ 367
>P50070 DNA primase [Myxococcus xanthus]
Length=606
Score = 209 bits (531), Expect = 2e-62
Identities = 150/482 (31%), Positives = 236/482 (49%), Gaps = 70/482 (15%)
Query 1 MAIPQHTIDQILDRTDLVELIGQRVKLKKTGRTYSGCCPFHQEKSPSFHVYRDKGYYHCF 60
+ IP+H I ++L+R DLV LI + V LKK GR + CCPFHQEK+PSF+V +K +Y C
Sbjct 3 VVIPEHKIQEVLERVDLVGLISRHVDLKKAGREWKACCPFHQEKTPSFYVVPEKRFYFCH 62
Query 61 GCQANGNAIRFLMDIDGRNFIDVMQELSSKSGVELPKDNFEQKKLSYKRNTQKPEPKPVV 120
GC+A+G+A+ F+ G+ F+D +++L+ + GV+L + ++ E + +
Sbjct 63 GCRASGDAVSFVQRYLGKTFLDAVRDLARELGVDLEAE----------QDPSMRERQQIK 112
Query 121 NTEKSAPSHHAAISESSEQIDGLQAPSYFDDPFAQFDQSYMGFEDAPQEGNLYDLLENVA 180
A H A+ +Q +G A +Y D++ M F G + LE
Sbjct 113 EATDQAAEHFRAM--LWQQDEGRSARAYIASRGVS-DETAMAF------GLGWAPLE--- 160
Query 181 QFYEKQLPNSNKAQQYFKQRGLSAETIQFWRLGYAPEDWQHLEKAFPYDIEGLKQVGLIR 240
++ T +F +LG +E + GL+
Sbjct 161 ---------------------WASLTERFQKLGM---------------LEWAAKAGLVL 184
Query 241 SSDSGRD-FDLLRERVIFPIRDHKGRVVGFGGRALNDEIKPKYINSPDSEIFHKNQLLYG 299
+SG +D R RV+ PIR +GR + FGGR + + PKY+NS +S +++K++ L+G
Sbjct 185 KRNSGDGYYDFFRSRVMVPIRAPEGRPIAFGGRLIGADEGPKYLNSRESRLYNKSETLFG 244
Query 300 LYEGRK--LKAKDWLMVEGYMDVIALQQYGVYGAVATLGTASNADHLNTLFKQNSR-ITI 356
+ + R K K ++VEGY D + L Q GV AVA T A H+ L + +R + +
Sbjct 245 MDQSRDEIRKRKAAVLVEGYFDALGLHQVGVRHAVALCSTNLTAGHMQVLKRAEARELIL 304
Query 357 AFDGDAAGQKAARRTLEIALPSLNDGRELKFFVLPKEHDPDSLIRREGLEHFQRLLEQAP 416
DGD+AG A R ++ P L G + +LP+ DPD+ RREG E +RLLE A
Sbjct 305 LLDGDSAGLAAVER---LSGPLLAAGATARVALLPQGDDPDTFARREGQEGVERLLEGAH 361
Query 417 LLSDFIFAHLTQQHDISTPEGKSQVMGELRELTELLPKQGSFRYLLTQSFREKLGLGRKW 476
L+ +FA L + ++ E K + L+ + +P G R L + E G W
Sbjct 362 PLTSHLFASLLPEGKAASFEEKMAALERLKPVVGQVP-VGLVRATLFSAVAEHFG----W 416
Query 477 TP 478
P
Sbjct 417 RP 418
Score = 21.2 bits (43), Expect = 2.6
Identities = 8/29 (28%), Positives = 17/29 (59%), Gaps = 0/29 (0%)
Query 559 HEIADIIERTDIQTLMNAPETADKHAKEY 587
H+I +++ER D+ L++ K +E+
Sbjct 8 HKIQEVLERVDLVGLISRHVDLKKAGREW 36
>P30103 DNA primase [Rickettsia prowazekii (strain Madrid E)]
Length=593
Score = 208 bits (530), Expect = 3e-62
Identities = 136/453 (30%), Positives = 228/453 (50%), Gaps = 71/453 (16%)
Query 1 MAIPQHTIDQILDRTDLVELIGQRVKLKKTGRTYSGCCPFHQEKSPSFHVYRDKGYYHCF 60
M + Q + + +R ++ +++ Q++ L + Y G CPFHQEK+PSF V K +++CF
Sbjct 1 MRVTQEFYEFLRNRINISDVVRQKLALTRKSSNYVGLCPFHQEKTPSFTVSDSKRFFYCF 60
Query 61 GCQANGNAIRFLMDIDGRNFIDVMQELSSKSGVELPKD-NFEQKKLSYKRNTQKPEPKPV 119
GC+A+G+ I+F +I G ++ ++S ++L D E KL+ K+
Sbjct 61 GCKASGDVIKFTSNISGLSY--------NESAIKLANDYGIEIPKLTVKQK--------- 103
Query 120 VNTEKSAPSHHAAISESSEQIDGLQAPSYFDDPFAQFDQSYMGFEDAPQEGNLYDLLENV 179
E E+ D N+ ++LE
Sbjct 104 ---------------EFYEESD-----------------------------NILNILELA 119
Query 180 AQFYEKQLPNSNKAQQYFKQRGLSAETIQFWRLGYAPEDWQHLEKAF---PYDIEGLKQV 236
+F+ QL + + Y +R ++ TI+ + +G+AP + EK F DI L Q
Sbjct 120 NKFFRTQL--TPEILNYLYKRNITETTIKEFSIGFAPRN-NKFEKFFLDKKIDITKLGQA 176
Query 237 GLIRSSDSGRDFDLLRERVIFPIRDHKGRVVGFGGRALNDEIKPKYINSPDSEIFHKNQL 296
GLI +G+ ++L R+ PIR+ ++VGFGGR L +E+ PKY+NS ++ +F K+ +
Sbjct 177 GLIGKCKNGKIYNLFSNRITIPIRNIYNKIVGFGGRVLGNEL-PKYLNSFETIVFQKSDI 235
Query 297 LYGLYEG--RKLKAKDWLMVEGYMDVIALQQYGVYGAVATLGTASNADHLNTLFKQNSRI 354
LYG ++ K ++VEGY DVIAL Q G VA+LGT+ HL+ L++ I
Sbjct 236 LYGEHKAISSSYKKNRSILVEGYFDVIALHQAGFNEVVASLGTSVTESHLHKLWRAGDEI 295
Query 355 TIAFDGDAAGQKAARRTLEIALPSLNDGRELKFFVLPKEHDPDSLIRREGLEHFQRLLEQ 414
+ DGD AG KA+ RT+ +ALP +N +++ F LP DPD + + G + F +L+++
Sbjct 296 ILCLDGDNAGIKASIRTINLALPLVNSEKKISFIRLPSGLDPDDAVNKNGADFFAKLIDK 355
Query 415 APLLSDFIFAHLTQQHDISTPEGKSQVMGELRE 447
LS+ I+ + T E K+ + L++
Sbjct 356 RISLSEMIWHIEYSGKNFRTAEEKANLEKNLKD 388
Score = 20.8 bits (42), Expect = 3.4
Identities = 21/96 (22%), Positives = 45/96 (47%), Gaps = 8/96 (8%)
Query 512 FEALRAFIDPQQLLAQILAIIDRVFDEL---PDDQELATYYVLGACNQFSH-----EIAD 563
+E LR I+ ++ Q LA+ + + + P QE + + +F + D
Sbjct 8 YEFLRNRINISDVVRQKLALTRKSSNYVGLCPFHQEKTPSFTVSDSKRFFYCFGCKASGD 67
Query 564 IIERTDIQTLMNAPETADKHAKEYALGLKEKYLRQK 599
+I+ T + ++ E+A K A +Y + + + ++QK
Sbjct 68 VIKFTSNISGLSYNESAIKLANDYGIEIPKLTVKQK 103
Lambda K H a alpha
0.320 0.137 0.402 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 5955664
Database: 04a65dabaacf4481286ebf34da8bea42.SwissProt.fasta
Posted date: Jun 1, 2024 2:10 AM
Number of letters in database: 11,514
Number of sequences in database: 19
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
