BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: dfa50a7335cfc385f3cf82cab742d0e1.SwissProt.fasta
5 sequences; 3,760 total letters
Query= ACIAD2924
Length=70
Score E
Sequences producing significant alignments: (Bits) Value
Q5ZK95 Coiled-coil domain-containing protein 43 [Gallus gallus] 33.1 2e-06
Q9HNP5 Histidine--tRNA ligase [Halobacterium salinarum (strain AT... 31.6 6e-06
B0R6V2 Histidine--tRNA ligase [Halobacterium salinarum (strain AT... 31.6 6e-06
Q6FXP4 Multiple RNA-binding domain-containing protein 1 [Candida ... 30.8 1e-05
P75471 Cytadherence high molecular weight protein 2 [Mycoplasma p... 30.8 1e-05
>Q5ZK95 Coiled-coil domain-containing protein 43 [Gallus gallus]
Length=217
Score = 33.1 bits (74), Expect = 2e-06
Identities = 19/63 (30%), Positives = 34/63 (54%), Gaps = 2/63 (3%)
Query 9 DDNYSDDDDVSFDEASGKISAKESLEKRRLIDDLLAQRRLEREL--KDFDYDLDDDDLDD 66
D+ DD+ S + I +++SL + ++D+L R+LEREL +F + D L
Sbjct 133 DEEDGDDEQDSSTATAVNIGSEKSLFRNTNVEDVLNARKLERELLRDEFQKKKEQDKLQR 192
Query 67 DED 69
++D
Sbjct 193 EKD 195
>Q9HNP5 Histidine--tRNA ligase [Halobacterium salinarum (strain
ATCC 700922 / JCM 11081 / NRC-1)]
Length=432
Score = 31.6 bits (70), Expect = 6e-06
Identities = 21/74 (28%), Positives = 33/74 (45%), Gaps = 9/74 (12%)
Query 1 VSSTDFELDDNYSD---------DDDVSFDEASGKISAKESLEKRRLIDDLLAQRRLERE 51
++ DFE ++ D D V + A + +E +E+ +DDL A +
Sbjct 151 LTGADFEFRVSHRDILGGLLAAFDATVDTEAAIRTVDKREKIERAAYLDDLAAAGLSYDQ 210
Query 52 LKDFDYDLDDDDLD 65
+ FD LD DDLD
Sbjct 211 AEQFDDLLDGDDLD 224
>B0R6V2 Histidine--tRNA ligase [Halobacterium salinarum (strain
ATCC 29341 / DSM 671 / R1)]
Length=432
Score = 31.6 bits (70), Expect = 6e-06
Identities = 21/74 (28%), Positives = 33/74 (45%), Gaps = 9/74 (12%)
Query 1 VSSTDFELDDNYSD---------DDDVSFDEASGKISAKESLEKRRLIDDLLAQRRLERE 51
++ DFE ++ D D V + A + +E +E+ +DDL A +
Sbjct 151 LTGADFEFRVSHRDILGGLLAAFDATVDTEAAIRTVDKREKIERAAYLDDLAAAGLSYDQ 210
Query 52 LKDFDYDLDDDDLD 65
+ FD LD DDLD
Sbjct 211 AEQFDDLLDGDDLD 224
>Q6FXP4 Multiple RNA-binding domain-containing protein 1 [Candida
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC
0622 / NRRL Y-65 / CBS 138)]
Length=861
Score = 30.8 bits (68), Expect = 1e-05
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 3/61 (5%)
Query 9 DDNYSDDDDVSFDEASGKISAKESLEKRRLIDDLLAQRRLERELKDFDYDLDDDDLDDDE 68
D+N SDD+ +SF+ A K + ES E+ ++I L++ ++ E + +DD L +E
Sbjct 204 DENDSDDEYMSFNNADSKAGSDESNEEEKMIS--LSELPVQNEESSAE-PKEDDGLAKNE 260
Query 69 D 69
+
Sbjct 261 E 261
Score = 16.9 bits (32), Expect = 1.1
Identities = 12/43 (28%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query 18 VSFDEASGKISAKESLEKR----RLIDDLLAQRRLERELKDFD 56
V F + + A L+K+ RL+ L A + L +FD
Sbjct 371 VLFAKPEEAVQAYIELDKQIFQGRLLHILAADEMKDHRLDEFD 413
Score = 15.8 bits (29), Expect = 2.7
Identities = 4/9 (44%), Positives = 8/9 (89%), Gaps = 0/9 (0%)
Query 60 DDDDLDDDE 68
++ +LDD+E
Sbjct 178 EEQELDDEE 186
>P75471 Cytadherence high molecular weight protein 2 [Mycoplasma
pneumoniae (strain ATCC 29342 / M129 / Subtype 1)]
Length=1818
Score = 30.8 bits (68), Expect = 1e-05
Identities = 16/25 (64%), Positives = 17/25 (68%), Gaps = 0/25 (0%)
Query 27 ISAKESLEKRRLIDDLLAQRRLERE 51
I +E LEKRR IDDLL Q LE E
Sbjct 413 IQERELLEKRREIDDLLTQASLEYE 437
Score = 17.7 bits (34), Expect = 0.57
Identities = 11/60 (18%), Positives = 28/60 (47%), Gaps = 5/60 (8%)
Query 1 VSSTDFELDDNYSDDDDVSFDEASGKISAKESLEKRRLIDDLLAQRRLERELKDFDYDLD 60
++ DF ++ ++ DD+ + KI+ ++ + K + D + L +E + + D
Sbjct 287 LNDADFYINSRLAELDDL-----TSKINERDFVSKEQAQDVKASLANLTKEKERLSAEKD 341
Score = 17.7 bits (34), Expect = 0.57
Identities = 16/46 (35%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query 23 ASGKISAKES-----LEKRRLIDDLLAQRRLERELKDFDYDLDDDD 63
A K+S KE+ LEK R ++ Q + R LK + DL+ +D
Sbjct 1561 AKQKLSEKEARILKLLEKMRAVEQQY-QAEITR-LKTRNADLEKND 1604
Score = 15.4 bits (28), Expect = 3.8
Identities = 6/13 (46%), Positives = 9/13 (69%), Gaps = 0/13 (0%)
Query 49 ERELKDFDYDLDD 61
EREL + ++DD
Sbjct 415 ERELLEKRREIDD 427
Score = 14.6 bits (26), Expect = 7.0
Identities = 5/11 (45%), Positives = 6/11 (55%), Gaps = 0/11 (0%)
Query 5 DFELDDNYSDD 15
+FE NY D
Sbjct 94 NFEFQKNYMVD 104
Lambda K H a alpha
0.318 0.141 0.389 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 140595
Database: dfa50a7335cfc385f3cf82cab742d0e1.SwissProt.fasta
Posted date: May 30, 2024 4:42 PM
Number of letters in database: 3,760
Number of sequences in database: 5
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
