Comparative Genomics

ACIAD2924 / TrEMBL Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 987f72860aafff1750b89dcbf23d3eda.TrEMBL.fasta
           12 sequences; 824 total letters



Query= ACIAD2924

Length=70
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q6F8H6 Acidic transcription factor A [Acinetobacter baylyi (strai...  139     2e-49
A0A7G2SIE4 Acidic transcription factor A [Acinetobacter sp]           137     6e-49
A0A0M1I4G4 Acidic transcription factor A [Acinetobacter sp. C15]      134     8e-48
A0A1P8EED3 Acidic transcription factor A [Acinetobacter soli]         134     8e-48
N9AIX1 Acidic transcription factor A [Acinetobacter soli NIPH 2899]   134     8e-48
S3TY43 Acidic transcription factor A [Acinetobacter baumannii NIP...  129     7e-46
A0A7U3Y2C4 Acidic transcription factor A [Acinetobacter baumannii...  129     7e-46
A0A654L2Q3 Acidic transcription factor A [Acinetobacter baumannii...  129     7e-46
A0A0R1BPW8 Acidic transcription factor A [Acinetobacter nosocomia...  129     7e-46
A0A5K6CMZ3 Acidic transcription factor A [Acinetobacter baumannii...  129     7e-46
A0A427PQ43 Acidic transcription factor A [Acinetobacter sp. FDAAR...  129     1e-45
A0A3F3LAS8 Acidic transcription factor A [Acinetobacter ursingii]     129     1e-45


>Q6F8H6 Acidic transcription factor A [Acinetobacter baylyi (strain 
ATCC 33305 / BD413 / ADP1)]
Length=69

 Score = 139 bits (349),  Expect = 2e-49
 Identities = 68/69 (99%), Positives = 69/69 (100%), Gaps = 0/69 (0%)

Query  1   VSSTDFELDDNYSDDDDVSFDEASGKISAKESLEKRRLIDDLLAQRRLERELKDFDYDLD  60
           +SSTDFELDDNYSDDDDVSFDEASGKISAKESLEKRRLIDDLLAQRRLERELKDFDYDLD
Sbjct  1   MSSTDFELDDNYSDDDDVSFDEASGKISAKESLEKRRLIDDLLAQRRLERELKDFDYDLD  60

Query  61  DDDLDDDED  69
           DDDLDDDED
Sbjct  61  DDDLDDDED  69


>A0A7G2SIE4 Acidic transcription factor A [Acinetobacter sp]
Length=69

 Score = 137 bits (345),  Expect = 6e-49
 Identities = 67/69 (97%), Positives = 69/69 (100%), Gaps = 0/69 (0%)

Query  1   VSSTDFELDDNYSDDDDVSFDEASGKISAKESLEKRRLIDDLLAQRRLERELKDFDYDLD  60
           +SSTDFELDDNYSDDDDVSFDEASGKISAKESLEKRRLIDDLLAQRRLERELKDFDYDLD
Sbjct  1   MSSTDFELDDNYSDDDDVSFDEASGKISAKESLEKRRLIDDLLAQRRLERELKDFDYDLD  60

Query  61  DDDLDDDED  69
           DD+LDDDED
Sbjct  61  DDELDDDED  69


>A0A0M1I4G4 Acidic transcription factor A [Acinetobacter sp. C15]
Length=70

 Score = 134 bits (338),  Expect = 8e-48
 Identities = 65/69 (94%), Positives = 68/69 (99%), Gaps = 0/69 (0%)

Query  1   VSSTDFELDDNYSDDDDVSFDEASGKISAKESLEKRRLIDDLLAQRRLERELKDFDYDLD  60
           +SSTDFELDDNY DDDDVSFDEASGKISAKESLEKRRLIDDLLAQRRLERELKDFDYDLD
Sbjct  1   MSSTDFELDDNYGDDDDVSFDEASGKISAKESLEKRRLIDDLLAQRRLERELKDFDYDLD  60

Query  61  DDDLDDDED  69
           DDDLDDD++
Sbjct  61  DDDLDDDDE  69


>A0A1P8EED3 Acidic transcription factor A [Acinetobacter soli]
Length=70

 Score = 134 bits (338),  Expect = 8e-48
 Identities = 65/69 (94%), Positives = 68/69 (99%), Gaps = 0/69 (0%)

Query  1   VSSTDFELDDNYSDDDDVSFDEASGKISAKESLEKRRLIDDLLAQRRLERELKDFDYDLD  60
           +SSTDFELDDNY DDDDVSFDEASGKISAKESLEKRRLIDDLLAQRRLERELKDFDYDLD
Sbjct  1   MSSTDFELDDNYGDDDDVSFDEASGKISAKESLEKRRLIDDLLAQRRLERELKDFDYDLD  60

Query  61  DDDLDDDED  69
           DDDLDDD++
Sbjct  61  DDDLDDDDE  69


>N9AIX1 Acidic transcription factor A [Acinetobacter soli NIPH 
2899]
Length=70

 Score = 134 bits (338),  Expect = 8e-48
 Identities = 65/69 (94%), Positives = 68/69 (99%), Gaps = 0/69 (0%)

Query  1   VSSTDFELDDNYSDDDDVSFDEASGKISAKESLEKRRLIDDLLAQRRLERELKDFDYDLD  60
           +SSTDFELDDNY DDDDVSFDEASGKISAKESLEKRRLIDDLLAQRRLERELKDFDYDLD
Sbjct  1   MSSTDFELDDNYGDDDDVSFDEASGKISAKESLEKRRLIDDLLAQRRLERELKDFDYDLD  60

Query  61  DDDLDDDED  69
           DDDLDDD++
Sbjct  61  DDDLDDDDE  69


>S3TY43 Acidic transcription factor A [Acinetobacter baumannii 
NIPH 410]
Length=68

 Score = 129 bits (325),  Expect = 7e-46
 Identities = 62/68 (91%), Positives = 66/68 (97%), Gaps = 0/68 (0%)

Query  1   VSSTDFELDDNYSDDDDVSFDEASGKISAKESLEKRRLIDDLLAQRRLERELKDFDYDLD  60
           +SSTDFELDDNY DDDDV FDE+SGKISAKESLEKRRLIDDLLAQRRLERELKDFDYDLD
Sbjct  1   MSSTDFELDDNYGDDDDVGFDESSGKISAKESLEKRRLIDDLLAQRRLERELKDFDYDLD  60

Query  61  DDDLDDDE  68
           DDDLDD++
Sbjct  61  DDDLDDED  68


 Score = 17.7 bits (34),  Expect = 0.084
 Identities = 7/14 (50%), Positives = 11/14 (79%), Gaps = 1/14 (7%)

Query  56  DYDLDDDDLDDDED  69
           D++LDD+   DD+D
Sbjct  5   DFELDDN-YGDDDD  17


>A0A7U3Y2C4 Acidic transcription factor A [Acinetobacter baumannii 
(strain ACICU)]
Length=68

 Score = 129 bits (325),  Expect = 7e-46
 Identities = 62/68 (91%), Positives = 66/68 (97%), Gaps = 0/68 (0%)

Query  1   VSSTDFELDDNYSDDDDVSFDEASGKISAKESLEKRRLIDDLLAQRRLERELKDFDYDLD  60
           +SSTDFELDDNY DDDDV FDE+SGKISAKESLEKRRLIDDLLAQRRLERELKDFDYDLD
Sbjct  1   MSSTDFELDDNYGDDDDVGFDESSGKISAKESLEKRRLIDDLLAQRRLERELKDFDYDLD  60

Query  61  DDDLDDDE  68
           DDDLDD++
Sbjct  61  DDDLDDED  68


 Score = 17.7 bits (34),  Expect = 0.084
 Identities = 7/14 (50%), Positives = 11/14 (79%), Gaps = 1/14 (7%)

Query  56  DYDLDDDDLDDDED  69
           D++LDD+   DD+D
Sbjct  5   DFELDDN-YGDDDD  17


>A0A654L2Q3 Acidic transcription factor A [Acinetobacter baumannii 
(strain MDR-ZJ06)]
Length=68

 Score = 129 bits (325),  Expect = 7e-46
 Identities = 62/68 (91%), Positives = 66/68 (97%), Gaps = 0/68 (0%)

Query  1   VSSTDFELDDNYSDDDDVSFDEASGKISAKESLEKRRLIDDLLAQRRLERELKDFDYDLD  60
           +SSTDFELDDNY DDDDV FDE+SGKISAKESLEKRRLIDDLLAQRRLERELKDFDYDLD
Sbjct  1   MSSTDFELDDNYGDDDDVGFDESSGKISAKESLEKRRLIDDLLAQRRLERELKDFDYDLD  60

Query  61  DDDLDDDE  68
           DDDLDD++
Sbjct  61  DDDLDDED  68


 Score = 17.7 bits (34),  Expect = 0.084
 Identities = 7/14 (50%), Positives = 11/14 (79%), Gaps = 1/14 (7%)

Query  56  DYDLDDDDLDDDED  69
           D++LDD+   DD+D
Sbjct  5   DFELDDN-YGDDDD  17


>A0A0R1BPW8 Acidic transcription factor A [Acinetobacter nosocomialis]
Length=68

 Score = 129 bits (325),  Expect = 7e-46
 Identities = 62/68 (91%), Positives = 66/68 (97%), Gaps = 0/68 (0%)

Query  1   VSSTDFELDDNYSDDDDVSFDEASGKISAKESLEKRRLIDDLLAQRRLERELKDFDYDLD  60
           +SSTDFELDDNY DDDDV FDE+SGKISAKESLEKRRLIDDLLAQRRLERELKDFDYDLD
Sbjct  1   MSSTDFELDDNYGDDDDVGFDESSGKISAKESLEKRRLIDDLLAQRRLERELKDFDYDLD  60

Query  61  DDDLDDDE  68
           DDDLDD++
Sbjct  61  DDDLDDED  68


 Score = 17.7 bits (34),  Expect = 0.084
 Identities = 7/14 (50%), Positives = 11/14 (79%), Gaps = 1/14 (7%)

Query  56  DYDLDDDDLDDDED  69
           D++LDD+   DD+D
Sbjct  5   DFELDDN-YGDDDD  17


>A0A5K6CMZ3 Acidic transcription factor A [Acinetobacter baumannii 
(strain AB307-0294)]
Length=68

 Score = 129 bits (325),  Expect = 7e-46
 Identities = 62/68 (91%), Positives = 66/68 (97%), Gaps = 0/68 (0%)

Query  1   VSSTDFELDDNYSDDDDVSFDEASGKISAKESLEKRRLIDDLLAQRRLERELKDFDYDLD  60
           +SSTDFELDDNY DDDDV FDE+SGKISAKESLEKRRLIDDLLAQRRLERELKDFDYDLD
Sbjct  1   MSSTDFELDDNYGDDDDVGFDESSGKISAKESLEKRRLIDDLLAQRRLERELKDFDYDLD  60

Query  61  DDDLDDDE  68
           DDDLDD++
Sbjct  61  DDDLDDED  68


 Score = 17.7 bits (34),  Expect = 0.084
 Identities = 7/14 (50%), Positives = 11/14 (79%), Gaps = 1/14 (7%)

Query  56  DYDLDDDDLDDDED  69
           D++LDD+   DD+D
Sbjct  5   DFELDDN-YGDDDD  17


>A0A427PQ43 Acidic transcription factor A [Acinetobacter sp. FDAARGOS_515]
Length=68

 Score = 129 bits (323),  Expect = 1e-45
 Identities = 62/68 (91%), Positives = 66/68 (97%), Gaps = 0/68 (0%)

Query  1   VSSTDFELDDNYSDDDDVSFDEASGKISAKESLEKRRLIDDLLAQRRLERELKDFDYDLD  60
           +SSTDFELDD+Y DDDDVSFDEASGKISAKESLEKRRLIDDLLAQRRLERELKDFDYD D
Sbjct  1   MSSTDFELDDSYGDDDDVSFDEASGKISAKESLEKRRLIDDLLAQRRLERELKDFDYDFD  60

Query  61  DDDLDDDE  68
           DDDLDD++
Sbjct  61  DDDLDDED  68


 Score = 17.3 bits (33),  Expect = 0.12
 Identities = 7/14 (50%), Positives = 10/14 (71%), Gaps = 1/14 (7%)

Query  56  DYDLDDDDLDDDED  69
           D++LDD    DD+D
Sbjct  5   DFELDDS-YGDDDD  17


>A0A3F3LAS8 Acidic transcription factor A [Acinetobacter ursingii]
Length=68

 Score = 129 bits (323),  Expect = 1e-45
 Identities = 62/68 (91%), Positives = 66/68 (97%), Gaps = 0/68 (0%)

Query  1   VSSTDFELDDNYSDDDDVSFDEASGKISAKESLEKRRLIDDLLAQRRLERELKDFDYDLD  60
           +SSTDFELDD+Y DDDDVSFDEASGKISAKESLEKRRLIDDLLAQRRLERELKDFDYD D
Sbjct  1   MSSTDFELDDSYGDDDDVSFDEASGKISAKESLEKRRLIDDLLAQRRLERELKDFDYDFD  60

Query  61  DDDLDDDE  68
           DDDLDD++
Sbjct  61  DDDLDDED  68


 Score = 17.3 bits (33),  Expect = 0.12
 Identities = 7/14 (50%), Positives = 10/14 (71%), Gaps = 1/14 (7%)

Query  56  DYDLDDDDLDDDED  69
           D++LDD    DD+D
Sbjct  5   DFELDDS-YGDDDD  17



Lambda      K        H        a         alpha
   0.318    0.141    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 29200


  Database: 987f72860aafff1750b89dcbf23d3eda.TrEMBL.fasta
    Posted date:  May 30, 2024  6:18 PM
  Number of letters in database: 824
  Number of sequences in database:  12



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40