BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: bc1ec3fe2f15cfe78b3bffa7318be6ee.SwissProt.fasta
           11 sequences; 1,319 total letters



Query= ACIAD2932

Length=127
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P0ACN3 Uncharacterized HTH-type transcriptional regulator YtfH [S...  82.0    4e-25
P0ACN2 Uncharacterized HTH-type transcriptional regulator YtfH [E...  82.0    4e-25
O32238 Uncharacterized HTH-type transcriptional regulator YvaP [B...  64.7    1e-18
P37486 Uncharacterized HTH-type transcriptional regulator YybR [B...  62.8    1e-17
P96673 Uncharacterized HTH-type transcriptional regulator YdeP [B...  60.1    1e-16
Q9Z9W1 Uncharacterized HTH-type transcriptional regulator BH0655 ...  58.9    3e-16
Q93K57 Putative regulatory protein MalR [Fusobacterium mortiferum]    58.2    4e-16
P72979 Uncharacterized HTH-type transcriptional regulator sll1512...  55.5    9e-15
O27346 Uncharacterized HTH-type transcriptional regulator MTH_128...  55.1    1e-14
O34844 HTH-type transcriptional regulator YodB [Bacillus subtilis...  53.9    2e-14
O31494 Uncharacterized HTH-type transcriptional regulator YdzF [B...  52.4    8e-14


>P0ACN3 Uncharacterized HTH-type transcriptional regulator YtfH 
[Shigella flexneri]
Length=126

 Score = 82.0 bits (201),  Expect = 4e-25
 Identities = 41/110 (37%), Positives = 65/110 (59%), Gaps = 0/110 (0%)

Query  8    NVYSQFCPARHFFEKMADKWVLLILNVLGREPLHFNLLKKRIEGISPKVLSQKLKILERD  67
            N++++ CP+R   + +  +W +LIL  L      F+ L+++I G+S K+L+Q L+ LE+D
Sbjct  14   NLFAEQCPSREVLKHVTSRWGVLILVALREGTHRFSDLRRKIGGVSEKMLAQSLQALEQD  73

Query  68   GFIKREIQQTSPIRVEYSLTDLGHDVSQTAFKLKEWAESNIEIVLKAQHQ  117
            GF+ R      P  VEYSLT LG  VS+    L +W E N+  VL  + +
Sbjct  74   GFLNRIAYPVVPPHVEYSLTPLGEQVSEKVAALADWIELNLPEVLAVRDE  123


>P0ACN2 Uncharacterized HTH-type transcriptional regulator YtfH 
[Escherichia coli (strain K12)]
Length=126

 Score = 82.0 bits (201),  Expect = 4e-25
 Identities = 41/110 (37%), Positives = 65/110 (59%), Gaps = 0/110 (0%)

Query  8    NVYSQFCPARHFFEKMADKWVLLILNVLGREPLHFNLLKKRIEGISPKVLSQKLKILERD  67
            N++++ CP+R   + +  +W +LIL  L      F+ L+++I G+S K+L+Q L+ LE+D
Sbjct  14   NLFAEQCPSREVLKHVTSRWGVLILVALREGTHRFSDLRRKIGGVSEKMLAQSLQALEQD  73

Query  68   GFIKREIQQTSPIRVEYSLTDLGHDVSQTAFKLKEWAESNIEIVLKAQHQ  117
            GF+ R      P  VEYSLT LG  VS+    L +W E N+  VL  + +
Sbjct  74   GFLNRIAYPVVPPHVEYSLTPLGEQVSEKVAALADWIELNLPEVLAVRDE  123


>O32238 Uncharacterized HTH-type transcriptional regulator YvaP 
[Bacillus subtilis (strain 168)]
Length=108

 Score = 64.7 bits (156),  Expect = 1e-18
 Identities = 36/103 (35%), Positives = 60/103 (58%), Gaps = 7/103 (7%)

Query  11   SQFCPARHFFEKMAD----KWVLLILNVLGREPLHFNLLKKRIEGISPKVLSQKLKILER  66
            S+ CP    FEK  D    +WV LI+  L      F+ ++  +  +S +VLS++LK LE 
Sbjct  4    SEMCPR---FEKAVDILSKRWVALIVFQLLNGSQRFSEIEAALPNLSGRVLSERLKELEL  60

Query  67   DGFIKREIQQTSPIRVEYSLTDLGHDVSQTAFKLKEWAESNIE  109
            +G +KR++   +P+R+EYSLTD G  ++    ++ +WA   I+
Sbjct  61   EGVVKRDVIPETPVRIEYSLTDKGKALAPILGEISKWATEWID  103


>P37486 Uncharacterized HTH-type transcriptional regulator YybR 
[Bacillus subtilis (strain 168)]
Length=125

 Score = 62.8 bits (151),  Expect = 1e-17
 Identities = 31/106 (29%), Positives = 56/106 (53%), Gaps = 2/106 (2%)

Query  8    NVY--SQFCPARHFFEKMADKWVLLILNVLGREPLHFNLLKKRIEGISPKVLSQKLKILE  65
            N+Y   + CP     + +  KW  ++   +      FN  ++    I+ ++L+ +L+ LE
Sbjct  6    NIYPNKEGCPVEFTLDVIGGKWKGILFYHMIDGKKRFNEFRRICPSITQRMLTLQLRELE  65

Query  66   RDGFIKREIQQTSPIRVEYSLTDLGHDVSQTAFKLKEWAESNIEIV  111
             DG + RE+    P +VEYSLT+ G  +     ++KEW ESN +++
Sbjct  66   ADGIVHREVYHQVPPKVEYSLTEFGRTLEPIVLQMKEWGESNRDVL  111


>P96673 Uncharacterized HTH-type transcriptional regulator YdeP 
[Bacillus subtilis (strain 168)]
Length=128

 Score = 60.1 bits (144),  Expect = 1e-16
 Identities = 31/92 (34%), Positives = 49/92 (53%), Gaps = 0/92 (0%)

Query  14   CPARHFFEKMADKWVLLILNVLGREPLHFNLLKKRIEGISPKVLSQKLKILERDGFIKRE  73
            CP     + +  KW  ++L  L      FN  +K    I+ ++L+ +L+ LERDG I RE
Sbjct  18   CPVETTLDIIGGKWKGILLYHLIDGKKRFNEFRKLYPKITQRMLTLQLRELERDGVIHRE  77

Query  74   IQQTSPIRVEYSLTDLGHDVSQTAFKLKEWAE  105
            + +  P +VEYSLT+ G  +      +K+W E
Sbjct  78   VYKQVPPKVEYSLTEFGRTLEPVILHMKDWGE  109


>Q9Z9W1 Uncharacterized HTH-type transcriptional regulator BH0655 
[Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 
18197 / FERM 7344 / JCM 9153 / C-125)]
Length=113

 Score = 58.9 bits (141),  Expect = 3e-16
 Identities = 35/97 (36%), Positives = 52/97 (54%), Gaps = 1/97 (1%)

Query  12   QFCPARHFFEKMADKWVLLILNVLGRE-PLHFNLLKKRIEGISPKVLSQKLKILERDGFI  70
            Q  P  +    +  KW ++I+ +L  + P+ F  LK++I  I+ K LS +LK LE DG +
Sbjct  14   QDTPFGYTLSLIGGKWKMVIIYLLAEDQPIRFKELKRQIGTITYKTLSSQLKELEADGLV  73

Query  71   KREIQQTSPIRVEYSLTDLGHDVSQTAFKLKEWAESN  107
            KR+     P +VEYSLTD    +     +L EW   N
Sbjct  74   KRKEYPQVPPKVEYSLTDKAGTLLPILEELCEWGVKN  110


>Q93K57 Putative regulatory protein MalR [Fusobacterium mortiferum]
Length=106

 Score = 58.2 bits (139),  Expect = 4e-16
 Identities = 32/95 (34%), Positives = 53/95 (56%), Gaps = 1/95 (1%)

Query  14   CPARHFFEKMADKWVLLILNVLGREPLH-FNLLKKRIEGISPKVLSQKLKILERDGFIKR  72
            C   +    M  KW  +IL  LG E +H +  LK++++GI+ K+L+Q+LK L  D  I R
Sbjct  12   CSIEYTLSFMGGKWKPIILWHLGTEGIHRYGELKRKLDGITHKMLAQQLKELADDNLIIR  71

Query  73   EIQQTSPIRVEYSLTDLGHDVSQTAFKLKEWAESN  107
            +     P +VEYS+T+ G  + +    + +W + N
Sbjct  72   KEYPQVPPKVEYSITEKGMGLMEILNLMHKWGQEN  106


>P72979 Uncharacterized HTH-type transcriptional regulator sll1512 
[Synechocystis sp. (strain PCC 6803 / Kazusa)]
Length=135

 Score = 55.5 bits (132),  Expect = 9e-15
 Identities = 30/96 (31%), Positives = 47/96 (49%), Gaps = 4/96 (4%)

Query  14   CPARHFFEKMADKWVLLILNVLGREPLHFNLLKKRIEGISPKVLSQKLKILERDGFIKRE  73
            CP +H  + + +KW +L+L  L +       L   + G S K L+ +L+ LE  G I R+
Sbjct  25   CPIQHVVDLLDNKWSILVLRELFKGQRRTGQLLDALPGCSTKTLTLRLRQLETHGIINRD  84

Query  74   IQQTSPIRVEYSLTDLGHDVSQTAFKL----KEWAE  105
            +    P RVEYSLT  G ++      +     +W E
Sbjct  85   VYPEIPPRVEYSLTARGREIQPVLIAMHKLGSDWLE  120


>O27346 Uncharacterized HTH-type transcriptional regulator MTH_1285 
[Methanothermobacter thermautotrophicus (strain ATCC 29096 
/ DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)]
Length=131

 Score = 55.1 bits (131),  Expect = 1e-14
 Identities = 36/111 (32%), Positives = 52/111 (47%), Gaps = 8/111 (7%)

Query  3    SILAYNVYS--------QFCPARHFFEKMADKWVLLILNVLGREPLHFNLLKKRIEGISP  54
            SI  Y+ YS          C       ++  KW  L+L  L    L F+ + +RI  I+ 
Sbjct  7    SIPGYSGYSGDDMGDDEYLCSVEVAVNEIGGKWKSLVLCTLKDGKLRFSEINRRIPKITQ  66

Query  55   KVLSQKLKILERDGFIKREIQQTSPIRVEYSLTDLGHDVSQTAFKLKEWAE  105
            ++L++ L+ LE  G I RE+    P RVEY LT+ G  V      L EW +
Sbjct  67   RMLTRTLRELESSGLINREVYPEVPPRVEYCLTEKGKSVIPILDALCEWGK  117


>O34844 HTH-type transcriptional regulator YodB [Bacillus subtilis 
(strain 168)]
Length=112

 Score = 53.9 bits (128),  Expect = 2e-14
 Identities = 27/90 (30%), Positives = 53/90 (59%), Gaps = 0/90 (0%)

Query  20   FEKMADKWVLLILNVLGREPLHFNLLKKRIEGISPKVLSQKLKILERDGFIKREIQQTSP  79
            F  +  +W  LI++VL   P  F  + + I  IS K+L+++LK LE++  ++R++   +P
Sbjct  13   FSLLGKRWNGLIIHVLMDGPKRFKEITETIPMISQKMLAERLKELEQNEIVERQVLPETP  72

Query  80   IRVEYSLTDLGHDVSQTAFKLKEWAESNIE  109
            ++V Y+LT+ G  +     +++ WA+   E
Sbjct  73   VKVIYTLTEKGTALQAVFQEMQAWADQFCE  102


>O31494 Uncharacterized HTH-type transcriptional regulator YdzF 
[Bacillus subtilis (strain 168)]
Length=109

 Score = 52.4 bits (124),  Expect = 8e-14
 Identities = 31/94 (33%), Positives = 51/94 (54%), Gaps = 1/94 (1%)

Query  11   SQFCPARHFFEKMADKWVLLILNVLGREP-LHFNLLKKRIEGISPKVLSQKLKILERDGF  69
            S+  P  +    +  KW + IL  LG E  + +  LK+ +  I+ K+LS +LK L+ DG 
Sbjct  7    SKQAPFEYTLSLIGGKWKMRILYELGCEKTMRYGELKRAMPFITHKMLSAQLKELQTDGL  66

Query  70   IKREIQQTSPIRVEYSLTDLGHDVSQTAFKLKEW  103
            I R     +P++VEYSL+D G  +     ++ +W
Sbjct  67   IHRSEVSHTPLKVEYSLSDRGRSLYPLIDEMCKW  100



Lambda      K        H        a         alpha
   0.326    0.139    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 98000


  Database: bc1ec3fe2f15cfe78b3bffa7318be6ee.SwissProt.fasta
    Posted date:  May 31, 2024  10:42 AM
  Number of letters in database: 1,319
  Number of sequences in database:  11



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40