BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: b7442668145004f2d29040cf0050bb08.SwissProt.fasta
           5 sequences; 910 total letters



Query= ACIAD2966

Length=157
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P0AAS4 Inner membrane protein YbbJ [Shigella flexneri]                48.1    9e-12
P0AAS3 Inner membrane protein YbbJ [Escherichia coli (strain K12)]    48.1    9e-12
B1ZLL2 Glycerol-3-phosphate acyltransferase [Methylorubrum populi...  42.7    1e-09
B7KWA0 Glycerol-3-phosphate acyltransferase [Methylorubrum extorq...  38.9    3e-08
A9W739 Glycerol-3-phosphate acyltransferase [Methylorubrum extorq...  38.5    4e-08


>P0AAS4 Inner membrane protein YbbJ [Shigella flexneri]
Length=152

 Score = 48.1 bits (113),  Expect = 9e-12
 Identities = 23/64 (36%), Positives = 41/64 (64%), Gaps = 1/64 (2%)

Query  10  WFVLGILLMLSELVITAFAALWFGIAAIMVSVLLWLFPMMGITTQVIMWIILSVLCTLLW  69
           W  LG LL+ +E++      LW G+AA++  +++WL P +G   Q +M+ IL++L   LW
Sbjct  13  WLSLGGLLLAAEMLGGNGYLLWSGVAAVITGLVVWLVP-LGWEWQGVMFAILTLLAAWLW  71

Query  70  FKFI  73
           +K++
Sbjct  72  WKWL  75


 Score = 13.9 bits (24),  Expect = 7.6
 Identities = 8/28 (29%), Positives = 13/28 (46%), Gaps = 3/28 (11%)

Query  5   LEPWHWFVLGILLMLSELVITAFAALWF  32
           L P  W   G++  +  L+    A LW+
Sbjct  48  LVPLGWEWQGVMFAILTLLA---AWLWW  72


>P0AAS3 Inner membrane protein YbbJ [Escherichia coli (strain 
K12)]
Length=152

 Score = 48.1 bits (113),  Expect = 9e-12
 Identities = 23/64 (36%), Positives = 41/64 (64%), Gaps = 1/64 (2%)

Query  10  WFVLGILLMLSELVITAFAALWFGIAAIMVSVLLWLFPMMGITTQVIMWIILSVLCTLLW  69
           W  LG LL+ +E++      LW G+AA++  +++WL P +G   Q +M+ IL++L   LW
Sbjct  13  WLSLGGLLLAAEMLGGNGYLLWSGVAAVITGLVVWLVP-LGWEWQGVMFAILTLLAAWLW  71

Query  70  FKFI  73
           +K++
Sbjct  72  WKWL  75


 Score = 13.9 bits (24),  Expect = 7.6
 Identities = 8/28 (29%), Positives = 13/28 (46%), Gaps = 3/28 (11%)

Query  5   LEPWHWFVLGILLMLSELVITAFAALWF  32
           L P  W   G++  +  L+    A LW+
Sbjct  48  LVPLGWEWQGVMFAILTLLA---AWLWW  72


>B1ZLL2 Glycerol-3-phosphate acyltransferase [Methylorubrum populi 
(strain ATCC BAA-705 / NCIMB 13946 / BJ001)]
Length=202

 Score = 42.7 bits (99),  Expect = 1e-09
 Identities = 35/92 (38%), Positives = 46/92 (50%), Gaps = 15/92 (16%)

Query  13   LGILLMLSELVITAFAALWFGIA-AIMVSVLLWLFPMMGITTQVIMW--------IILSV  63
            +G+LL LS L + AFAA+W G+A A+  S L  L       T VI+W         +  V
Sbjct  117  IGVLLALSPLTLAAFAAIWLGLAFALKYSSLAAL--AASAATPVILWALGHGGVAALFLV  174

Query  64   LCTLLWFKFIKPLSIDKTKAGLSREATIGQIG  95
            L  LLW+K     +I +  AG   E  IGQ G
Sbjct  175  LAALLWWKHAP--NIRRLAAG--TEGRIGQKG  202


 Score = 18.9 bits (37),  Expect = 0.18
 Identities = 20/58 (34%), Positives = 27/58 (47%), Gaps = 11/58 (19%)

Query  75   PLSIDKTK-AGLSREATIGQ--IGMVI-----RVGLSHEQIV---VRFALPVLGADEW  121
            P  +  TK AGL    TIG   IG        R GL+   ++   ++  LPVL A +W
Sbjct  26   PFGLILTKVAGLGDVRTIGSGNIGATNVLRTGRKGLAAATLLCDALKGTLPVLAAGQW  83


>B7KWA0 Glycerol-3-phosphate acyltransferase [Methylorubrum extorquens 
(strain CM4 / NCIMB 13688)]
Length=202

 Score = 38.9 bits (89),  Expect = 3e-08
 Identities = 32/92 (35%), Positives = 46/92 (50%), Gaps = 15/92 (16%)

Query  13   LGILLMLSELVITAFAALWFGIA-AIMVSVLLWLFPMMGITTQVIMW--------IILSV  63
            +G+LL LS + + AFAA+W G+A A+  S L  L       T +I+W         +  V
Sbjct  117  IGVLLALSPVTLAAFAAIWLGLAFALKYSSLAAL--AASAATPLILWALGHGAVAALFLV  174

Query  64   LCTLLWFKFIKPLSIDKTKAGLSREATIGQIG  95
            L  LLW+K     +I +  AG   E  IG+ G
Sbjct  175  LAALLWWKHAP--NIRRLAAG--TEGRIGKKG  202


 Score = 18.9 bits (37),  Expect = 0.18
 Identities = 23/75 (31%), Positives = 31/75 (41%), Gaps = 11/75 (15%)

Query  58   WIILSVLCTLLWFKFIKPLSIDKTK-AGLSREATIGQ--IGMVI-----RVGLSHEQIV-  108
            W +L     L +     P  +  TK AGL    TIG   IG        R GL+   ++ 
Sbjct  9    WPVLITALVLGYACGAIPFGLILTKFAGLGDVRTIGSGNIGATNVLRTGRKGLAAATLLC  68

Query  109  --VRFALPVLGADEW  121
              ++  LPVL A  W
Sbjct  69   DALKGTLPVLAASHW  83


>A9W739 Glycerol-3-phosphate acyltransferase [Methylorubrum extorquens 
(strain PA1)]
Length=202

 Score = 38.5 bits (88),  Expect = 4e-08
 Identities = 32/92 (35%), Positives = 46/92 (50%), Gaps = 15/92 (16%)

Query  13   LGILLMLSELVITAFAALWFGIA-AIMVSVLLWLFPMMGITTQVIMW--------IILSV  63
            +G+LL LS + + AFAA+W G+A A+  S L  L       T +I+W         +  V
Sbjct  117  IGVLLALSPVTLAAFAAIWLGLAFALKYSSLSAL--AASAATPLILWALGHGAVAALFLV  174

Query  64   LCTLLWFKFIKPLSIDKTKAGLSREATIGQIG  95
            L  LLW+K     +I +  AG   E  IG+ G
Sbjct  175  LAALLWWKHAP--NIRRLAAG--TEGRIGKKG  202


 Score = 17.7 bits (34),  Expect = 0.42
 Identities = 6/9 (67%), Positives = 6/9 (67%), Gaps = 0/9 (0%)

Query  113  LPVLGADEW  121
            LPVL A  W
Sbjct  75   LPVLAASHW  83



Lambda      K        H        a         alpha
   0.334    0.146    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97920


  Database: b7442668145004f2d29040cf0050bb08.SwissProt.fasta
    Posted date:  May 29, 2024  11:49 PM
  Number of letters in database: 910
  Number of sequences in database:  5



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40