BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 878c4980c756fb4172028e146f6d9f35.SwissProt.fasta
           3 sequences; 521 total letters



Query= ACIAD3020

Length=194
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P0A4J9 Anti-sigma-B factor antagonist [Listeria innocua serovar 6...  34.7    4e-07
P0A4J8 Anti-sigma-B factor antagonist [Listeria monocytogenes ser...  34.7    4e-07
Q3TTJ4 Uncharacterized protein C8orf48 homolog [Mus musculus]         35.8    4e-07


>P0A4J9 Anti-sigma-B factor antagonist [Listeria innocua serovar 
6a (strain ATCC BAA-680 / CLIP 11262)]
Length=114

 Score = 34.7 bits (78),  Expect = 4e-07
 Identities = 28/108 (26%), Positives = 49/108 (45%), Gaps = 3/108 (3%)

Query  26   VEYASLDGTHIFKLI-GEVRAQSCISLDKLLNRIEQQKNVVGAIVDLTQTTFIDSTVLGI  84
            +E    D  HI   + GE+ A +   + + L  + Q K  +   +DLT+ +++DST LG+
Sbjct  5    IEIKERDTDHIDIFVAGEIDAYTAPKVKEALE-VYQVKEGIVLRIDLTEVSYMDSTGLGV  63

Query  85   LAKLGLKLKQAHHIQAVMLSTNPDITTLANSMGLGQVFVILNYCGDPN  132
                   L+Q    + V+   +  +  L    GL  +  I N  G+ N
Sbjct  64   FVGAFKSLRQ-RQSELVLFGLSDRLFRLFEITGLSDIIEIKNVEGEMN  110


>P0A4J8 Anti-sigma-B factor antagonist [Listeria monocytogenes 
serovar 1/2a (strain ATCC BAA-679 / EGD-e)]
Length=114

 Score = 34.7 bits (78),  Expect = 4e-07
 Identities = 28/108 (26%), Positives = 49/108 (45%), Gaps = 3/108 (3%)

Query  26   VEYASLDGTHIFKLI-GEVRAQSCISLDKLLNRIEQQKNVVGAIVDLTQTTFIDSTVLGI  84
            +E    D  HI   + GE+ A +   + + L  + Q K  +   +DLT+ +++DST LG+
Sbjct  5    IEIKERDTDHIDIFVAGEIDAYTAPKVKEALE-VYQVKEGIVLRIDLTEVSYMDSTGLGV  63

Query  85   LAKLGLKLKQAHHIQAVMLSTNPDITTLANSMGLGQVFVILNYCGDPN  132
                   L+Q    + V+   +  +  L    GL  +  I N  G+ N
Sbjct  64   FVGAFKSLRQ-RQSELVLFGLSDRLFRLFEITGLSDIIEIKNVEGEMN  110


>Q3TTJ4 Uncharacterized protein C8orf48 homolog [Mus musculus]
Length=293

 Score = 35.8 bits (81),  Expect = 4e-07
 Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 30/152 (20%)

Query  42   EVRAQSCISLDKLLNRI--EQQKNVVGAIVDLTQTTFIDSTVLGILAKLGLKLKQAHHIQ  99
            EV A +C   D+L NRI  E  +  +  I  +TQ                       HI 
Sbjct  169  EVDAFNCTIPDELWNRIYLENTRATLAYIGAITQ-----------------------HIS  205

Query  100  AVMLSTNPDITTLANSMGLGQVFVILNYCGDPNVCTLELMDEHITHTAMLTTVLDAHKTL  159
            +   S N     LA S  L +   +L      ++   E +DEH+  T  LT V +AH+  
Sbjct  206  SQCPSCNSKRAELAQSDFLRRRKTLLQ-----SLLLQEKIDEHLHTTDFLTRVGEAHQGF  260

Query  160  MRLNENNQNMFEPLVKQLQKEQDSLDEACSKQ  191
             RL+++ + +++ L +++ K       A SKQ
Sbjct  261  PRLSDDPRIIWKRLTEKMLKGSSGFGRAYSKQ  292


 Score = 17.3 bits (33),  Expect = 0.45
 Identities = 6/17 (35%), Positives = 11/17 (65%), Gaps = 0/17 (0%)

Query  175  KQLQKEQDSLDEACSKQ  191
            K+  +E D+L   C+K+
Sbjct  122  KESAEELDALQSFCTKK  138



Lambda      K        H        a         alpha
   0.322    0.136    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 73480


  Database: 878c4980c756fb4172028e146f6d9f35.SwissProt.fasta
    Posted date:  May 31, 2024  11:33 AM
  Number of letters in database: 521
  Number of sequences in database:  3



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40