BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 55602d7e2c640d8b1568c376924de74a.SwissProt.fasta
20 sequences; 8,782 total letters
Query= ACIAD3038
Length=423
Score E
Sequences producing significant alignments: (Bits) Value
Q9HTV1 Transcription termination factor Rho [Pseudomonas aerugino... 692 0.0
P52155 Transcription termination factor Rho [Pseudomonas fluoresc... 688 0.0
P52152 Transcription termination factor Rho [Allochromatium vinos... 654 0.0
P0A296 Transcription termination factor Rho [Salmonella typhi] 652 0.0
P0A295 Transcription termination factor Rho [Salmonella typhimuri... 652 0.0
P0AG33 Transcription termination factor Rho [Shigella flexneri] 650 0.0
P0AG31 Transcription termination factor Rho [Escherichia coli O6:... 650 0.0
P0AG32 Transcription termination factor Rho [Escherichia coli O15... 650 0.0
P0AG30 Transcription termination factor Rho [Escherichia coli (st... 650 0.0
P57652 Transcription termination factor Rho [Buchnera aphidicola ... 646 0.0
O51891 Transcription termination factor Rho [Buchnera aphidicola ... 646 0.0
Q89A22 Transcription termination factor Rho [Buchnera aphidicola ... 638 0.0
P44619 Transcription termination factor Rho [Haemophilus influenz... 621 0.0
Q7NXP1 Transcription termination factor Rho [Chromobacterium viol... 602 0.0
Q06447 Transcription termination factor Rho [Neisseria gonorrhoeae] 577 0.0
P52156 Transcription termination factor Rho [Cereibacter sphaeroi... 554 0.0
P33561 Transcription termination factor Rho [Borreliella burgdorf... 479 3e-170
Q03222 Transcription termination factor Rho [Bacillus subtilis (s... 464 5e-166
P38527 Transcription termination factor Rho [Thermotoga maritima ... 457 6e-163
P52157 Transcription termination factor Rho [Streptomyces lividans] 421 3e-145
>Q9HTV1 Transcription termination factor Rho [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847
/ LMG 12228 / 1C / PRS 101 / PAO1)]
Length=419
Score = 692 bits (1787), Expect = 0.0
Identities = 342/419 (82%), Positives = 387/419 (92%), Gaps = 0/419 (0%)
Query 1 MNLTELKKKPIGELIKIAEFMGLEGMARNRKQDIIFAILKRHAMNGEEIFGDGVLEILSD 60
MNLTELK+KPI EL+++++ MGLE MAR+RKQDIIFA+LK+HA +GEEI GDGVLEIL D
Sbjct 1 MNLTELKQKPIAELLEMSDAMGLENMARSRKQDIIFALLKKHAKSGEEISGDGVLEILQD 60
Query 61 GFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPKEGERYFALLKVNQIN 120
GFGFLRSA SYLAGPDDIYVSPSQIRRFNLRTGDTI G IRPPKEGERYFALLKV+ IN
Sbjct 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIIGKIRPPKEGERYFALLKVDSIN 120
Query 121 YDTPENSRNKILFENLTPLFPTEQLVMELGNGTTEDLTTRVVDLIAPIGKGQRSIIVAPP 180
+D PEN++NKILFENLTPLFP E++ ME GNG+TEDLT RV+DL APIGKGQR +IVAPP
Sbjct 121 FDRPENAKNKILFENLTPLFPNERMKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP 180
Query 181 KAGKTMLLQSIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRGEVVASTFDESPARHV 240
KAGKT++LQ+IA +I RNNPE LIVLLIDERPEEVTEM+RTVRGEVVASTFDE P RHV
Sbjct 181 KAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV 240
Query 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALERPKRF 300
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALE+PKRF
Sbjct 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF 300
Query 301 FGAARNIEEGGSLTIISTALIETGSKMDDVIYEEFKGTGNQEITLDRRIAEKRVFPAMNI 360
FGAARNIEEGGSLTI++TAL+ETGSKMD+VIYEEFKGTGN E+ LDR+IAEKRVFPA+NI
Sbjct 301 FGAARNIEEGGSLTILATALVETGSKMDEVIYEEFKGTGNMELPLDRKIAEKRVFPAINI 360
Query 361 KKSGTRREERLMDEDNLRKVWILRKLLHPMDELAAMEFLLDRMKETKTNDDFFDQMKRK 419
+SGTRREE L ED L+++WILRK+LHPMDE++A+EFL+D++K+TKTND+FFD MKRK
Sbjct 361 NRSGTRREELLTSEDELQRMWILRKILHPMDEISAIEFLIDKLKQTKTNDEFFDSMKRK 419
>P52155 Transcription termination factor Rho [Pseudomonas fluorescens
biotype C]
Length=419
Score = 688 bits (1775), Expect = 0.0
Identities = 343/419 (82%), Positives = 386/419 (92%), Gaps = 0/419 (0%)
Query 1 MNLTELKKKPIGELIKIAEFMGLEGMARNRKQDIIFAILKRHAMNGEEIFGDGVLEILSD 60
MNLTELK+KPI +L+++AE MG+E MAR+RKQD+IF++LK+HA +GEEI GDGVLEIL D
Sbjct 1 MNLTELKQKPITDLLQLAEEMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD 60
Query 61 GFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPKEGERYFALLKVNQIN 120
GFGFLRSA SYLAGPDDIYVSPSQIRRFNLRTGDTI G IRPPKEGERYFALLKV+ IN
Sbjct 61 GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN 120
Query 121 YDTPENSRNKILFENLTPLFPTEQLVMELGNGTTEDLTTRVVDLIAPIGKGQRSIIVAPP 180
+D PEN++NKILFENLTPLFPT ++ ME GNG+TEDLT RV+DL APIGKGQR +IVAPP
Sbjct 121 FDRPENAKNKILFENLTPLFPTVRMKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP 180
Query 181 KAGKTMLLQSIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRGEVVASTFDESPARHV 240
KAGKT++LQ+IA +I RNNPEV LIVLLIDERPEEVTEM+RTVRGEVVASTFDE P RHV
Sbjct 181 KAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV 240
Query 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALERPKRF 300
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALE+PKRF
Sbjct 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF 300
Query 301 FGAARNIEEGGSLTIISTALIETGSKMDDVIYEEFKGTGNQEITLDRRIAEKRVFPAMNI 360
FGAARNIEEGGSLTII+TAL+ETGSKMD+VIYEEFKGTGN E+ LDRRIAEKRVFPA+NI
Sbjct 301 FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI 360
Query 361 KKSGTRREERLMDEDNLRKVWILRKLLHPMDELAAMEFLLDRMKETKTNDDFFDQMKRK 419
+SGTRREE L +D L+++WILRKLLHPMDE+AA+EFL+D++K TKTND+FF MKRK
Sbjct 361 NRSGTRREELLTADDELQRMWILRKLLHPMDEVAAIEFLIDKLKTTKTNDEFFLSMKRK 419
>P52152 Transcription termination factor Rho [Allochromatium vinosum
(strain ATCC 17899 / DSM 180 / NBRC 103801 / NCIMB 10441
/ D)]
Length=418
Score = 654 bits (1688), Expect = 0.0
Identities = 320/417 (77%), Positives = 375/417 (90%), Gaps = 0/417 (0%)
Query 1 MNLTELKKKPIGELIKIAEFMGLEGMARNRKQDIIFAILKRHAMNGEEIFGDGVLEILSD 60
MNLTELKK P+ L+ +A+ M +EG+ R+RKQD+IFAILK A GE+I+GDGVLEILSD
Sbjct 1 MNLTELKKMPVPNLVALAQSMDIEGVGRSRKQDLIFAILKAQAKKGEDIYGDGVLEILSD 60
Query 61 GFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPKEGERYFALLKVNQIN 120
GFGFLRSA SYLAGPDDIYVSPSQIRRF LRTGDTI+G IRPPK+GERYFALLKVN IN
Sbjct 61 GFGFLRSADASYLAGPDDIYVSPSQIRRFALRTGDTISGKIRPPKDGERYFALLKVNDIN 120
Query 121 YDTPENSRNKILFENLTPLFPTEQLVMELGNGTTEDLTTRVVDLIAPIGKGQRSIIVAPP 180
+D PEN+++KILFEN TPLF ++L +E+GNG+TED+T R +DL+APIGKGQR +IV+PP
Sbjct 121 FDRPENAKSKILFENFTPLFAQKRLTLEIGNGSTEDITARTIDLVAPIGKGQRGLIVSPP 180
Query 181 KAGKTMLLQSIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRGEVVASTFDESPARHV 240
KAGKTM+LQ+IAQSI N+P+ +LIVLLIDERPEEVTEM R+VRGEV++STFDE RHV
Sbjct 181 KAGKTMMLQNIAQSIGHNHPDCYLIVLLIDERPEEVTEMARSVRGEVISSTFDEPATRHV 240
Query 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALERPKRF 300
QVAEMVIEKAKRLVEHK+DVVILLDSITRLARAYNTV+PSSGKVLTGGVDA+AL+RPKRF
Sbjct 241 QVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQRPKRF 300
Query 301 FGAARNIEEGGSLTIISTALIETGSKMDDVIYEEFKGTGNQEITLDRRIAEKRVFPAMNI 360
FGAARN+EEGGSLTI++TAL++TGS+MDDVIYEEFKGTGN EI +DRRIAEKR+FPA+NI
Sbjct 301 FGAARNVEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMEIHMDRRIAEKRIFPAINI 360
Query 361 KKSGTRREERLMDEDNLRKVWILRKLLHPMDELAAMEFLLDRMKETKTNDDFFDQMK 417
+SGTRREE LM + L+K+WILRK+LHPMDELAAMEFL D++K TKTND+FF MK
Sbjct 361 NRSGTRREELLMGQAELQKMWILRKILHPMDELAAMEFLHDKLKATKTNDEFFSSMK 417
>P0A296 Transcription termination factor Rho [Salmonella typhi]
Length=419
Score = 652 bits (1683), Expect = 0.0
Identities = 324/418 (78%), Positives = 373/418 (89%), Gaps = 0/418 (0%)
Query 1 MNLTELKKKPIGELIKIAEFMGLEGMARNRKQDIIFAILKRHAMNGEEIFGDGVLEILSD 60
MNLTELK P+ ELI + E MGLE +AR RKQDIIFAILK+HA +GE+IFGDGVLEIL D
Sbjct 1 MNLTELKNTPVSELITLGESMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60
Query 61 GFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPKEGERYFALLKVNQIN 120
GFGFLRSA SYLAGPDDIYVSPSQIRRFNLRTGDTI+G IRPPKEGERYFALLKVN++N
Sbjct 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120
Query 121 YDTPENSRNKILFENLTPLFPTEQLVMELGNGTTEDLTTRVVDLIAPIGKGQRSIIVAPP 180
YD PEN+RNKILFENLTPL +L ME GNG+TEDLT RV+DL +PIG+GQR +IVAPP
Sbjct 121 YDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180
Query 181 KAGKTMLLQSIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRGEVVASTFDESPARHV 240
KAGKTMLLQ+IAQSI N+P+ L+VLLIDERPEEVTEM+R V+GEVVASTFDE +RHV
Sbjct 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240
Query 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALERPKRF 300
QVAEMVIEKAKRLVEHKKDV+ILLDSITRLARAYNTV+P+SGKVLTGGVDA+AL RPKRF
Sbjct 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300
Query 301 FGAARNIEEGGSLTIISTALIETGSKMDDVIYEEFKGTGNQEITLDRRIAEKRVFPAMNI 360
FGAARN+EEGGSLTII+TALI+TGSKMD+VIYEEFKGTGN E+ L R+IAEKRVFPA++
Sbjct 301 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360
Query 361 KKSGTRREERLMDEDNLRKVWILRKLLHPMDELAAMEFLLDRMKETKTNDDFFDQMKR 418
+SGTR+EE L ++ L+K+WILRK++HPM E+ AMEFL++++ TKTNDDFF+ MKR
Sbjct 361 NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKR 418
>P0A295 Transcription termination factor Rho [Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=419
Score = 652 bits (1683), Expect = 0.0
Identities = 324/418 (78%), Positives = 373/418 (89%), Gaps = 0/418 (0%)
Query 1 MNLTELKKKPIGELIKIAEFMGLEGMARNRKQDIIFAILKRHAMNGEEIFGDGVLEILSD 60
MNLTELK P+ ELI + E MGLE +AR RKQDIIFAILK+HA +GE+IFGDGVLEIL D
Sbjct 1 MNLTELKNTPVSELITLGESMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60
Query 61 GFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPKEGERYFALLKVNQIN 120
GFGFLRSA SYLAGPDDIYVSPSQIRRFNLRTGDTI+G IRPPKEGERYFALLKVN++N
Sbjct 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120
Query 121 YDTPENSRNKILFENLTPLFPTEQLVMELGNGTTEDLTTRVVDLIAPIGKGQRSIIVAPP 180
YD PEN+RNKILFENLTPL +L ME GNG+TEDLT RV+DL +PIG+GQR +IVAPP
Sbjct 121 YDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180
Query 181 KAGKTMLLQSIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRGEVVASTFDESPARHV 240
KAGKTMLLQ+IAQSI N+P+ L+VLLIDERPEEVTEM+R V+GEVVASTFDE +RHV
Sbjct 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240
Query 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALERPKRF 300
QVAEMVIEKAKRLVEHKKDV+ILLDSITRLARAYNTV+P+SGKVLTGGVDA+AL RPKRF
Sbjct 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300
Query 301 FGAARNIEEGGSLTIISTALIETGSKMDDVIYEEFKGTGNQEITLDRRIAEKRVFPAMNI 360
FGAARN+EEGGSLTII+TALI+TGSKMD+VIYEEFKGTGN E+ L R+IAEKRVFPA++
Sbjct 301 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360
Query 361 KKSGTRREERLMDEDNLRKVWILRKLLHPMDELAAMEFLLDRMKETKTNDDFFDQMKR 418
+SGTR+EE L ++ L+K+WILRK++HPM E+ AMEFL++++ TKTNDDFF+ MKR
Sbjct 361 NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKR 418
>P0AG33 Transcription termination factor Rho [Shigella flexneri]
Length=419
Score = 650 bits (1678), Expect = 0.0
Identities = 323/418 (77%), Positives = 373/418 (89%), Gaps = 0/418 (0%)
Query 1 MNLTELKKKPIGELIKIAEFMGLEGMARNRKQDIIFAILKRHAMNGEEIFGDGVLEILSD 60
MNLTELK P+ ELI + E MGLE +AR RKQDIIFAILK+HA +GE+IFGDGVLEIL D
Sbjct 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60
Query 61 GFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPKEGERYFALLKVNQIN 120
GFGFLRSA SYLAGPDDIYVSPSQIRRFNLRTGDTI+G IRPPKEGERYFALLKVN++N
Sbjct 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120
Query 121 YDTPENSRNKILFENLTPLFPTEQLVMELGNGTTEDLTTRVVDLIAPIGKGQRSIIVAPP 180
+D PEN+RNKILFENLTPL +L ME GNG+TEDLT RV+DL +PIG+GQR +IVAPP
Sbjct 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180
Query 181 KAGKTMLLQSIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRGEVVASTFDESPARHV 240
KAGKTMLLQ+IAQSI N+P+ L+VLLIDERPEEVTEM+R V+GEVVASTFDE +RHV
Sbjct 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240
Query 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALERPKRF 300
QVAEMVIEKAKRLVEHKKDV+ILLDSITRLARAYNTV+P+SGKVLTGGVDA+AL RPKRF
Sbjct 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300
Query 301 FGAARNIEEGGSLTIISTALIETGSKMDDVIYEEFKGTGNQEITLDRRIAEKRVFPAMNI 360
FGAARN+EEGGSLTII+TALI+TGSKMD+VIYEEFKGTGN E+ L R+IAEKRVFPA++
Sbjct 301 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360
Query 361 KKSGTRREERLMDEDNLRKVWILRKLLHPMDELAAMEFLLDRMKETKTNDDFFDQMKR 418
+SGTR+EE L ++ L+K+WILRK++HPM E+ AMEFL++++ TKTNDDFF+ MKR
Sbjct 361 NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKR 418
>P0AG31 Transcription termination factor Rho [Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=419
Score = 650 bits (1678), Expect = 0.0
Identities = 323/418 (77%), Positives = 373/418 (89%), Gaps = 0/418 (0%)
Query 1 MNLTELKKKPIGELIKIAEFMGLEGMARNRKQDIIFAILKRHAMNGEEIFGDGVLEILSD 60
MNLTELK P+ ELI + E MGLE +AR RKQDIIFAILK+HA +GE+IFGDGVLEIL D
Sbjct 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60
Query 61 GFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPKEGERYFALLKVNQIN 120
GFGFLRSA SYLAGPDDIYVSPSQIRRFNLRTGDTI+G IRPPKEGERYFALLKVN++N
Sbjct 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120
Query 121 YDTPENSRNKILFENLTPLFPTEQLVMELGNGTTEDLTTRVVDLIAPIGKGQRSIIVAPP 180
+D PEN+RNKILFENLTPL +L ME GNG+TEDLT RV+DL +PIG+GQR +IVAPP
Sbjct 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180
Query 181 KAGKTMLLQSIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRGEVVASTFDESPARHV 240
KAGKTMLLQ+IAQSI N+P+ L+VLLIDERPEEVTEM+R V+GEVVASTFDE +RHV
Sbjct 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240
Query 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALERPKRF 300
QVAEMVIEKAKRLVEHKKDV+ILLDSITRLARAYNTV+P+SGKVLTGGVDA+AL RPKRF
Sbjct 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300
Query 301 FGAARNIEEGGSLTIISTALIETGSKMDDVIYEEFKGTGNQEITLDRRIAEKRVFPAMNI 360
FGAARN+EEGGSLTII+TALI+TGSKMD+VIYEEFKGTGN E+ L R+IAEKRVFPA++
Sbjct 301 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360
Query 361 KKSGTRREERLMDEDNLRKVWILRKLLHPMDELAAMEFLLDRMKETKTNDDFFDQMKR 418
+SGTR+EE L ++ L+K+WILRK++HPM E+ AMEFL++++ TKTNDDFF+ MKR
Sbjct 361 NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKR 418
>P0AG32 Transcription termination factor Rho [Escherichia coli
O157:H7]
Length=419
Score = 650 bits (1678), Expect = 0.0
Identities = 323/418 (77%), Positives = 373/418 (89%), Gaps = 0/418 (0%)
Query 1 MNLTELKKKPIGELIKIAEFMGLEGMARNRKQDIIFAILKRHAMNGEEIFGDGVLEILSD 60
MNLTELK P+ ELI + E MGLE +AR RKQDIIFAILK+HA +GE+IFGDGVLEIL D
Sbjct 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60
Query 61 GFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPKEGERYFALLKVNQIN 120
GFGFLRSA SYLAGPDDIYVSPSQIRRFNLRTGDTI+G IRPPKEGERYFALLKVN++N
Sbjct 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120
Query 121 YDTPENSRNKILFENLTPLFPTEQLVMELGNGTTEDLTTRVVDLIAPIGKGQRSIIVAPP 180
+D PEN+RNKILFENLTPL +L ME GNG+TEDLT RV+DL +PIG+GQR +IVAPP
Sbjct 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180
Query 181 KAGKTMLLQSIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRGEVVASTFDESPARHV 240
KAGKTMLLQ+IAQSI N+P+ L+VLLIDERPEEVTEM+R V+GEVVASTFDE +RHV
Sbjct 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240
Query 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALERPKRF 300
QVAEMVIEKAKRLVEHKKDV+ILLDSITRLARAYNTV+P+SGKVLTGGVDA+AL RPKRF
Sbjct 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300
Query 301 FGAARNIEEGGSLTIISTALIETGSKMDDVIYEEFKGTGNQEITLDRRIAEKRVFPAMNI 360
FGAARN+EEGGSLTII+TALI+TGSKMD+VIYEEFKGTGN E+ L R+IAEKRVFPA++
Sbjct 301 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360
Query 361 KKSGTRREERLMDEDNLRKVWILRKLLHPMDELAAMEFLLDRMKETKTNDDFFDQMKR 418
+SGTR+EE L ++ L+K+WILRK++HPM E+ AMEFL++++ TKTNDDFF+ MKR
Sbjct 361 NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKR 418
>P0AG30 Transcription termination factor Rho [Escherichia coli
(strain K12)]
Length=419
Score = 650 bits (1678), Expect = 0.0
Identities = 323/418 (77%), Positives = 373/418 (89%), Gaps = 0/418 (0%)
Query 1 MNLTELKKKPIGELIKIAEFMGLEGMARNRKQDIIFAILKRHAMNGEEIFGDGVLEILSD 60
MNLTELK P+ ELI + E MGLE +AR RKQDIIFAILK+HA +GE+IFGDGVLEIL D
Sbjct 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60
Query 61 GFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPKEGERYFALLKVNQIN 120
GFGFLRSA SYLAGPDDIYVSPSQIRRFNLRTGDTI+G IRPPKEGERYFALLKVN++N
Sbjct 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120
Query 121 YDTPENSRNKILFENLTPLFPTEQLVMELGNGTTEDLTTRVVDLIAPIGKGQRSIIVAPP 180
+D PEN+RNKILFENLTPL +L ME GNG+TEDLT RV+DL +PIG+GQR +IVAPP
Sbjct 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180
Query 181 KAGKTMLLQSIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRGEVVASTFDESPARHV 240
KAGKTMLLQ+IAQSI N+P+ L+VLLIDERPEEVTEM+R V+GEVVASTFDE +RHV
Sbjct 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240
Query 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALERPKRF 300
QVAEMVIEKAKRLVEHKKDV+ILLDSITRLARAYNTV+P+SGKVLTGGVDA+AL RPKRF
Sbjct 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300
Query 301 FGAARNIEEGGSLTIISTALIETGSKMDDVIYEEFKGTGNQEITLDRRIAEKRVFPAMNI 360
FGAARN+EEGGSLTII+TALI+TGSKMD+VIYEEFKGTGN E+ L R+IAEKRVFPA++
Sbjct 301 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360
Query 361 KKSGTRREERLMDEDNLRKVWILRKLLHPMDELAAMEFLLDRMKETKTNDDFFDQMKR 418
+SGTR+EE L ++ L+K+WILRK++HPM E+ AMEFL++++ TKTNDDFF+ MKR
Sbjct 361 NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKR 418
>P57652 Transcription termination factor Rho [Buchnera aphidicola
subsp. Acyrthosiphon pisum (strain APS)]
Length=419
Score = 646 bits (1667), Expect = 0.0
Identities = 322/418 (77%), Positives = 370/418 (89%), Gaps = 0/418 (0%)
Query 1 MNLTELKKKPIGELIKIAEFMGLEGMARNRKQDIIFAILKRHAMNGEEIFGDGVLEILSD 60
MNLT LK P+ ELI + E MGLE +AR RKQDIIFAILK+HA +GE+IFGDGVLEIL D
Sbjct 1 MNLTALKNMPVSELITLGEKMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60
Query 61 GFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPKEGERYFALLKVNQIN 120
GFGFLRSA SYLAGPDDIYVSPSQIRRFNLRTGDTI G IRPPKEGERYFALLKVN++N
Sbjct 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKEGERYFALLKVNEVN 120
Query 121 YDTPENSRNKILFENLTPLFPTEQLVMELGNGTTEDLTTRVVDLIAPIGKGQRSIIVAPP 180
YD PEN+R+KILFENLTPL +L ME GNG+TEDLT RV+DL +PIG+GQR +IVAPP
Sbjct 121 YDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180
Query 181 KAGKTMLLQSIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRGEVVASTFDESPARHV 240
KAGKT+LLQ+IAQSI N+P+ L+VLLIDERPEEVTEM+R V+GEVVASTFDE +RHV
Sbjct 181 KAGKTILLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240
Query 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALERPKRF 300
QVAEMVIEKAKRLVEHKKDV+ILLDSITRLARAYNTV+P+SGKVLTGGVDA+AL RPKRF
Sbjct 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300
Query 301 FGAARNIEEGGSLTIISTALIETGSKMDDVIYEEFKGTGNQEITLDRRIAEKRVFPAMNI 360
FGAARN+EEGGSLTII+TAL++TGSKMD+VIYEEFKGTGN E+ L R+IAEKRVFPA++
Sbjct 301 FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELPLSRKIAEKRVFPAIDY 360
Query 361 KKSGTRREERLMDEDNLRKVWILRKLLHPMDELAAMEFLLDRMKETKTNDDFFDQMKR 418
+SGTR+EE L D L+K+WILRK++HPM E+ AMEFLL+++ TKTND+FFD MKR
Sbjct 361 NRSGTRKEELLTLPDELQKMWILRKIIHPMSEIDAMEFLLNKLAMTKTNDEFFDMMKR 418
>O51891 Transcription termination factor Rho [Buchnera aphidicola
subsp. Schizaphis graminum (strain Sg)]
Length=419
Score = 646 bits (1666), Expect = 0.0
Identities = 322/418 (77%), Positives = 370/418 (89%), Gaps = 0/418 (0%)
Query 1 MNLTELKKKPIGELIKIAEFMGLEGMARNRKQDIIFAILKRHAMNGEEIFGDGVLEILSD 60
MNLT LK P+ ELI + E MGLE +AR RKQDIIFAILK+HA +GE+IFGDGVLEIL D
Sbjct 1 MNLTALKNMPVSELITLGEKMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60
Query 61 GFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPKEGERYFALLKVNQIN 120
GFGFLRSA SYLAGPDDIYVSPSQIRRFNLRTGDTI+G IRPPKEGERYFALLKVN +N
Sbjct 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNAVN 120
Query 121 YDTPENSRNKILFENLTPLFPTEQLVMELGNGTTEDLTTRVVDLIAPIGKGQRSIIVAPP 180
YD PEN+R+KILFENLTPL +L ME GNG+TEDLT RV+DL +PIG+GQR +IVAPP
Sbjct 121 YDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180
Query 181 KAGKTMLLQSIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRGEVVASTFDESPARHV 240
KAGKT+LLQ+IAQSI N+P+ L+VLLIDERPEEVTEM+R V+GEVVASTFDE +RHV
Sbjct 181 KAGKTILLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240
Query 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALERPKRF 300
QVAEMVIEKAKRLVEHKKDV+ILLDSITRLARAYNTV+P+SGKVLTGGVDA+AL RPKRF
Sbjct 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300
Query 301 FGAARNIEEGGSLTIISTALIETGSKMDDVIYEEFKGTGNQEITLDRRIAEKRVFPAMNI 360
FGAARN+EEGGSLTII+TAL++TGSKMD+VIYEEFKGTGN E+ L R+IAEKRVFPA++
Sbjct 301 FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELPLSRKIAEKRVFPAIDY 360
Query 361 KKSGTRREERLMDEDNLRKVWILRKLLHPMDELAAMEFLLDRMKETKTNDDFFDQMKR 418
+SGTR+EE L D L+K+WILRK++HPM E+ AMEFLL+++ TKTND+FFD MKR
Sbjct 361 NRSGTRKEELLTLPDELQKMWILRKIIHPMSEIDAMEFLLNKLSMTKTNDEFFDMMKR 418
>Q89A22 Transcription termination factor Rho [Buchnera aphidicola
subsp. Baizongia pistaciae (strain Bp)]
Length=419
Score = 638 bits (1645), Expect = 0.0
Identities = 317/418 (76%), Positives = 369/418 (88%), Gaps = 0/418 (0%)
Query 1 MNLTELKKKPIGELIKIAEFMGLEGMARNRKQDIIFAILKRHAMNGEEIFGDGVLEILSD 60
MNLT LK P+ ELI + + GLE +AR RKQDIIF+ILK+HA +GE+IFGDGVLEIL D
Sbjct 1 MNLTALKNIPVSELIFLGDNAGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQD 60
Query 61 GFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPKEGERYFALLKVNQIN 120
GFGFLRS+ SYLAGPDDIYVSPSQIRRFNLRTGDTI+G IRPPKEGERYFALLKVN++N
Sbjct 61 GFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNKVN 120
Query 121 YDTPENSRNKILFENLTPLFPTEQLVMELGNGTTEDLTTRVVDLIAPIGKGQRSIIVAPP 180
YD PEN+R+KILFENLTPL +L ME GNG+TEDLT RV+DL +PIG+GQR +IVAPP
Sbjct 121 YDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180
Query 181 KAGKTMLLQSIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRGEVVASTFDESPARHV 240
KAGKTMLLQ+IAQSI N+P+ L+VLLIDERPEEVTEM R V+GEVVASTFDE +RHV
Sbjct 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMRRLVKGEVVASTFDEPSSRHV 240
Query 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALERPKRF 300
QV+EMVIEKAKRLVEHKKDV+ILLDSITRLARAYNTV+P+SGKVLTGGVDA+AL RPKRF
Sbjct 241 QVSEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300
Query 301 FGAARNIEEGGSLTIISTALIETGSKMDDVIYEEFKGTGNQEITLDRRIAEKRVFPAMNI 360
FGAARN+EEGGSLTII+TALI+TGSKMD+VIYEEFKGTGN E+ L R+IAEKRVFPA++
Sbjct 301 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELPLSRKIAEKRVFPAIDY 360
Query 361 KKSGTRREERLMDEDNLRKVWILRKLLHPMDELAAMEFLLDRMKETKTNDDFFDQMKR 418
+SGTR+EE L D L+K+WILRK++HPM E+ AMEFL++++ TKTN++FFD MKR
Sbjct 361 NRSGTRKEELLTKSDELQKMWILRKIIHPMSEIDAMEFLINKLAMTKTNNEFFDMMKR 418
>P44619 Transcription termination factor Rho [Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=420
Score = 621 bits (1602), Expect = 0.0
Identities = 312/419 (74%), Positives = 367/419 (88%), Gaps = 1/419 (0%)
Query 1 MNLTELKKKPIGELIKIAEF-MGLEGMARNRKQDIIFAILKRHAMNGEEIFGDGVLEILS 59
M+LTELK P+ +L+K+ E MGLE +AR RKQDI+FAILK+HA +GE+IFG GVLEIL
Sbjct 1 MHLTELKNTPVSDLVKLGEEQMGLENLARLRKQDIVFAILKQHAKSGEDIFGGGVLEILP 60
Query 60 DGFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPKEGERYFALLKVNQI 119
DGFGFLRSA SYLAGPDDIYVSPSQIRRFNL+TGD I G IRPPKEGERYFALLKV+Q+
Sbjct 61 DGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDQV 120
Query 120 NYDTPENSRNKILFENLTPLFPTEQLVMELGNGTTEDLTTRVVDLIAPIGKGQRSIIVAP 179
N D PE SR+KILFENLTPL +L ME GNG+TEDLT R++DL +PIGKGQR +IVAP
Sbjct 121 NDDKPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARILDLASPIGKGQRGLIVAP 180
Query 180 PKAGKTMLLQSIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRGEVVASTFDESPARH 239
PKAGKTMLLQ+IAQSI N P+V LIVLLIDERPEEVTEM+R+V+GEV+ASTFDE RH
Sbjct 181 PKAGKTMLLQNIAQSITHNYPDVELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPATRH 240
Query 240 VQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALERPKR 299
VQVAEMVIEKAKR VEHKKDVVILLDSITRLARAYNTV P+SGK+L+GGVDA+AL RPKR
Sbjct 241 VQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTVTPASGKILSGGVDANALHRPKR 300
Query 300 FFGAARNIEEGGSLTIISTALIETGSKMDDVIYEEFKGTGNQEITLDRRIAEKRVFPAMN 359
FFGAARN+EEGGSLTII+TAL++TGSKMD+VI+EEFKGTGN E+ L R+IAE+RVFPA++
Sbjct 301 FFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMELHLSRKIAERRVFPAID 360
Query 360 IKKSGTRREERLMDEDNLRKVWILRKLLHPMDELAAMEFLLDRMKETKTNDDFFDQMKR 418
K+SGTR+E+ L D L+K+WILRK+L+PMDE+ AMEFL+D++ KTN++FF+ MKR
Sbjct 361 FKRSGTRKEDLLTTADELQKMWILRKILNPMDEVDAMEFLIDKLMMAKTNEEFFEVMKR 419
>Q7NXP1 Transcription termination factor Rho [Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614
/ NCIMB 9131 / NCTC 9757)]
Length=418
Score = 602 bits (1553), Expect = 0.0
Identities = 297/418 (71%), Positives = 361/418 (86%), Gaps = 0/418 (0%)
Query 1 MNLTELKKKPIGELIKIAEFMGLEGMARNRKQDIIFAILKRHAMNGEEIFGDGVLEILSD 60
M+L++LK + EL+++A ++G R RKQD+IFA+LK A GE IFG+G LE+L D
Sbjct 1 MHLSDLKHLHVSELVEMAISNEIDGANRLRKQDLIFALLKNQAKKGESIFGEGTLEVLPD 60
Query 61 GFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPKEGERYFALLKVNQIN 120
GFGFLRS SYLAGPDDIYVSPSQIRRFNL TGD+I G IR PK+GERYFAL+KV+++N
Sbjct 61 GFGFLRSPDTSYLAGPDDIYVSPSQIRRFNLHTGDSIEGEIRTPKDGERYFALVKVDKVN 120
Query 121 YDTPENSRNKILFENLTPLFPTEQLVMELGNGTTEDLTTRVVDLIAPIGKGQRSIIVAPP 180
+ PENS++KILFENLTPLFPTEQ +E E++T R++DLI+PIGKGQR+++VAPP
Sbjct 121 GEAPENSKHKILFENLTPLFPTEQFKLEREIRAEENITGRIIDLISPIGKGQRALLVAPP 180
Query 181 KAGKTMLLQSIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRGEVVASTFDESPARHV 240
K+GKT++LQ IA +I N+PE LIVLLIDERPEEVTEM+R+VRGEVV+STFDE RHV
Sbjct 181 KSGKTVMLQHIAHAITANHPEAVLIVLLIDERPEEVTEMQRSVRGEVVSSTFDEPATRHV 240
Query 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALERPKRF 300
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTV+P+SGKVLTGGVDA+AL+RPKRF
Sbjct 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF 300
Query 301 FGAARNIEEGGSLTIISTALIETGSKMDDVIYEEFKGTGNQEITLDRRIAEKRVFPAMNI 360
FGAARN+EEGGSLTI++TALI+TGS+MDDVIYEEFKGTGN EI LDRR+AEKR+FPA+NI
Sbjct 301 FGAARNVEEGGSLTIVATALIDTGSRMDDVIYEEFKGTGNSEIHLDRRMAEKRIFPALNI 360
Query 361 KKSGTRREERLMDEDNLRKVWILRKLLHPMDELAAMEFLLDRMKETKTNDDFFDQMKR 418
+SGTRREE L+ +D L+++W+LRKLL+PMD+L AMEFL D++K TK+N FFD M+R
Sbjct 361 NRSGTRREELLVPQDQLQRIWVLRKLLYPMDDLEAMEFLQDKIKATKSNQAFFDSMRR 418
>Q06447 Transcription termination factor Rho [Neisseria gonorrhoeae]
Length=419
Score = 577 bits (1486), Expect = 0.0
Identities = 289/419 (69%), Positives = 351/419 (84%), Gaps = 0/419 (0%)
Query 1 MNLTELKKKPIGELIKIAEFMGLEGMARNRKQDIIFAILKRHAMNGEEIFGDGVLEILSD 60
M+++EL+ I +L+++AE G+E R RKQD++FAI+++ GE G LEIL D
Sbjct 1 MHVSELQTLHISKLLELAEEHGIENANRFRKQDLVFAIVRQMMKKGEGFTCSGTLEILPD 60
Query 61 GFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPKEGERYFALLKVNQIN 120
GFGFLRSA SYLAGPDDIYVSP+QIRRFNL TGDTI G++R PK+ ERYFAL++++ IN
Sbjct 61 GFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDSIN 120
Query 121 YDTPENSRNKILFENLTPLFPTEQLVMELGNGTTEDLTTRVVDLIAPIGKGQRSIIVAPP 180
D PE R+KILFENLTPLFPTEQL +E + E+LT R +DLI+PIGKGQR+++VAPP
Sbjct 121 GDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTGRAIDLISPIGKGQRALLVAPP 180
Query 181 KAGKTMLLQSIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRGEVVASTFDESPARHV 240
K GKT++L++IA + N PEV LIVLLIDERPEEVTEM R+VRGEVV+STFDE RHV
Sbjct 181 KIGKTVMLENIAHEVTANYPEVELIVLLIDERPEEVTEMSRSVRGEVVSSTFDEPAQRHV 240
Query 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALERPKRF 300
QVAEMV+EKAKR+VEHKKDVVILLDSITRLARAYNTV+P+SGK+LTGGVDA+AL RPKRF
Sbjct 241 QVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNTVVPASGKILTGGVDANALHRPKRF 300
Query 301 FGAARNIEEGGSLTIISTALIETGSKMDDVIYEEFKGTGNQEITLDRRIAEKRVFPAMNI 360
FGAARN+EEGGSLTII+TAL+ETGS+MDDVIYEEFKGTGN E+ LDRRIAEKR+FPA+NI
Sbjct 301 FGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMELHLDRRIAEKRLFPAINI 360
Query 361 KKSGTRREERLMDEDNLRKVWILRKLLHPMDELAAMEFLLDRMKETKTNDDFFDQMKRK 419
KSGTRREE L+ D L+++W+LRK LHPMDE+ A EFL ++K +K NDDFF+ M+ K
Sbjct 361 NKSGTRREELLVPNDQLQRMWLLRKFLHPMDEIEATEFLNGKIKASKNNDDFFELMRGK 419
>P52156 Transcription termination factor Rho [Cereibacter sphaeroides
(strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486
/ LMG 2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.)]
Length=422
Score = 554 bits (1428), Expect = 0.0
Identities = 270/416 (65%), Positives = 348/416 (84%), Gaps = 0/416 (0%)
Query 1 MNLTELKKKPIGELIKIAEFMGLEGMARNRKQDIIFAILKRHAMNGEEIFGDGVLEILSD 60
+NL +LK K +L+ +AE +E RK +++F+ILK HA G E+ GDGVLE+L D
Sbjct 5 LNLADLKAKTPADLLAMAEEWEIENAPSMRKGEMMFSILKEHAEEGYEVGGDGVLEVLQD 64
Query 61 GFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPKEGERYFALLKVNQIN 120
GFGFLRS +YL GPDDIYVSP +R+F+LRTGDTI G I P+E ERYF+L +V +IN
Sbjct 65 GFGFLRSPEANYLPGPDDIYVSPEILRQFSLRTGDTIEGVIVAPRENERYFSLTRVTKIN 124
Query 121 YDTPENSRNKILFENLTPLFPTEQLVMELGNGTTEDLTTRVVDLIAPIGKGQRSIIVAPP 180
+D PE +R+K+ F+NLTPL+P E+L ME+ + T +D + R++DL+APIGKGQR +IVAPP
Sbjct 125 FDDPERARHKVHFDNLTPLYPDERLKMEVDDPTMKDRSARIIDLVAPIGKGQRGLIVAPP 184
Query 181 KAGKTMLLQSIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRGEVVASTFDESPARHV 240
+ GKT+LLQ+IA SI N+PE +LIVLLIDERPEEVT+M+R+V+GEVV+STFDE RHV
Sbjct 185 RTGKTVLLQNIAHSIATNHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATRHV 244
Query 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALERPKRF 300
VAEMVIEKAKRLVEHK+DVVILLDSITRL RA+NTV+PSSGKVLTGGVDA+AL+RPKRF
Sbjct 245 AVAEMVIEKAKRLVEHKRDVVILLDSITRLGRAFNTVVPSSGKVLTGGVDANALQRPKRF 304
Query 301 FGAARNIEEGGSLTIISTALIETGSKMDDVIYEEFKGTGNQEITLDRRIAEKRVFPAMNI 360
FGAARNIEEGGSLTII+TALI+TGS+MD+VI+EEFKGTGN EI LDR++A+KRVFPAM+I
Sbjct 305 FGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRVFPAMDI 364
Query 361 KKSGTRREERLMDEDNLRKVWILRKLLHPMDELAAMEFLLDRMKETKTNDDFFDQM 416
KSGTR+E+ L+D+ +L+K ++LR++L+PM A+EFL+ ++++TK+N +FFD M
Sbjct 365 LKSGTRKEDLLVDKSDLQKTYVLRRILNPMGTTDAIEFLISKLRQTKSNAEFFDSM 420
>P33561 Transcription termination factor Rho [Borreliella burgdorferi
(strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)]
Length=515
Score = 479 bits (1232), Expect = 3e-170
Identities = 239/418 (57%), Positives = 330/418 (79%), Gaps = 5/418 (1%)
Query 1 MNLTELKKKPIGELIKIAEFMGLEGM--ARNRKQDIIFAILKRHAMNGEEIFGDGVLEIL 58
+ + +L KPI E+ KI E +G +K ++IF ++K + N ++ GVL++L
Sbjct 97 VEIEKLYDKPITEVRKIVEGLGTNHTIAVTMKKTELIFLLVKILSENNIDVLFTGVLDVL 156
Query 59 SDGFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPKEGERYFALLKVNQ 118
SDG+GFLR+A+ SYL+G +D+YVSPSQIR FNLRTGD + G IR P++GER+FA++K+
Sbjct 157 SDGYGFLRTASNSYLSGGNDVYVSPSQIRLFNLRTGDILYGQIRSPRDGERFFAMVKIKS 216
Query 119 INYDTPENSRNKILFENLTPLFPTEQLVMELGNGTTEDLTTRVVDLIAPIGKGQRSIIVA 178
IN P ++N+I F+NLTPL+P +L +E N +++TR+++L +PIGKGQR++IV+
Sbjct 217 INDQDPTFAQNRIPFDNLTPLYPNVKLNLEYENC---NISTRLINLFSPIGKGQRALIVS 273
Query 179 PPKAGKTMLLQSIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRGEVVASTFDESPAR 238
PPKAGKT LLQ IA +I N +V L++LLIDERPEEVT+M R+V+GEV+AS FDE +R
Sbjct 274 PPKAGKTTLLQKIANAITTNYSDVILMILLIDERPEEVTDMIRSVKGEVIASNFDEQASR 333
Query 239 HVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALERPK 298
HVQVAEMVIEKAKRLVE+KKDVVILLDSITRLARAYN +P+SGK+L+GGVD++AL +PK
Sbjct 334 HVQVAEMVIEKAKRLVENKKDVVILLDSITRLARAYNQTMPTSGKILSGGVDSNALHKPK 393
Query 299 RFFGAARNIEEGGSLTIISTALIETGSKMDDVIYEEFKGTGNQEITLDRRIAEKRVFPAM 358
RFFG+ARNIEEGGSLTII+TAL++TGSKMD+VI+EEFK TGN E+ LDR +A++R+FPA+
Sbjct 394 RFFGSARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKSTGNMELILDRSLADRRLFPAI 453
Query 359 NIKKSGTRREERLMDEDNLRKVWILRKLLHPMDELAAMEFLLDRMKETKTNDDFFDQM 416
NIKKSGTR+EE L+ E+ K+ ++R++L +D+ +E L+++MK++K N+ F M
Sbjct 454 NIKKSGTRKEELLLSEEERSKILLIRRILGGVDDYEGVEVLIEKMKKSKNNEIFLKTM 511
>Q03222 Transcription termination factor Rho [Bacillus subtilis
(strain 168)]
Length=427
Score = 464 bits (1195), Expect = 5e-166
Identities = 233/420 (55%), Positives = 323/420 (77%), Gaps = 8/420 (2%)
Query 1 MNLTELKKKPIGELIKIAEFMGLEGMARNRKQDIIFAILKRHAMNGEEIFGDGVLEIL-S 59
++++ L+ + EL ++A + ++ K+++IFAILK +A + +F +GVLEI+ S
Sbjct 4 VSISSLENMKLKELYELARHYKISYYSKLTKKELIFAILKANAEQEDLLFMEGVLEIIQS 63
Query 60 DGFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPKEGERYFALLKVNQI 119
+GFGFLR +Y +DIY+S SQIRRF+LR GD ++G +RPPKE ERY+ LL V +
Sbjct 64 EGFGFLRPI--NYSPSSEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYYGLLHVEAV 121
Query 120 NYDTPENSRNKILFENLTPLFPTEQLVMELGNGTTEDLTTRVVDLIAPIGKGQRSIIVAP 179
N D PE+++ ++ F LTPL+P Q+V+E L+TR++D++AP+G GQR +IVAP
Sbjct 122 NGDDPESAKERVHFPALTPLYPDRQMVLET---KPNFLSTRIMDMMAPVGFGQRGLIVAP 178
Query 180 PKAGKTMLLQSIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRGEVVASTFDESPARH 239
PKAGKTMLL+ IA SI N PE LIVLLIDERPEEVT++ER+V G+VV+STFDE P H
Sbjct 179 PKAGKTMLLKEIANSITANQPEAELIVLLIDERPEEVTDIERSVAGDVVSSTFDEVPENH 238
Query 240 VQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALERPKR 299
++VAE+V+E+A RLVEHKKDV+IL+DSITRLARAYN VIP SG+ L+GG+D A RPKR
Sbjct 239 IKVAELVLERAMRLVEHKKDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKR 298
Query 300 FFGAARNIEEGGSLTIISTALIETGSKMDDVIYEEFKGTGNQEITLDRRIAEKRVFPAMN 359
FFGAARNIEEGGSLTI++TAL++TGS+MDDVIYEEFKGTGN E+ LDR +AE+R+FPA++
Sbjct 299 FFGAARNIEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELHLDRSLAERRIFPAID 358
Query 360 IKKSGTRREERLMDEDNLRKVWILRKLLHPMDELAAMEFLLDRMKETKTNDDFFDQMKRK 419
I++SGTR+EE L+ +++L ++W +RK + + A E + +MK+TKTN +FFD + ++
Sbjct 359 IRRSGTRKEELLVPKEHLDRLWSIRKTMSDSPDFA--EKFMRKMKKTKTNQEFFDILNQE 416
>P38527 Transcription termination factor Rho [Thermotoga maritima
(strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826
/ MSB8)]
Length=427
Score = 457 bits (1175), Expect = 6e-163
Identities = 228/421 (54%), Positives = 309/421 (73%), Gaps = 3/421 (1%)
Query 1 MNLTELKKKPIGELIKIAEFMGLEGMARNRKQDIIFAILKRHAMNGEEIFGDGVLEILSD 60
++++EL+ I +L +IA+ +G+ RK+D+IFAILK + FG+GVLEI +
Sbjct 8 ISISELESMNIKQLYEIAKSLGIPRYTSMRKRDLIFAILKAQTESTGYFFGEGVLEIHPE 67
Query 61 GFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPKEGERYFALLKVNQIN 120
GFGFLR + L DDIY+SPSQIR+FNL TGD I+G IR PKEGE+YFA++K+ IN
Sbjct 68 GFGFLRRIEDNLLPSNDDIYISPSQIRKFNLNTGDIISGVIRKPKEGEKYFAMIKIEAIN 127
Query 121 YDTPENSRNKILFENLTPLFPTEQLVMELGNGTTEDLTTRVVDLIAPIGKGQRSIIVAPP 180
Y E +++ F+NLTP +P E+ ++E + +TR++DL APIGKGQR +IVAPP
Sbjct 128 YRPVEAVNDRVNFDNLTPDYPRERFILETD---PKIYSTRLIDLFAPIGKGQRGMIVAPP 184
Query 181 KAGKTMLLQSIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRGEVVASTFDESPARHV 240
KAGKT +L+ IA I N+P+ I+LLIDERPEEVT++ + V+A+ FD P + V
Sbjct 185 KAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDIRESTNAIVIAAPFDMPPDKQV 244
Query 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALERPKRF 300
+VAE+ +E AKRLVE DVVILLDS+TRLAR YN V+P SGK+LTGGVD AL +PKRF
Sbjct 245 KVAELTLEMAKRLVEFNYDVVILLDSLTRLARVYNIVVPPSGKLLTGGVDPAALYKPKRF 304
Query 301 FGAARNIEEGGSLTIISTALIETGSKMDDVIYEEFKGTGNQEITLDRRIAEKRVFPAMNI 360
FGAARN EGGSLTII+TAL+ETGSKMD+VI+EEFKGTGN E+ L R++A KR+FPA+N+
Sbjct 305 FGAARNTREGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELVLSRQLANKRIFPAINL 364
Query 361 KKSGTRREERLMDEDNLRKVWILRKLLHPMDELAAMEFLLDRMKETKTNDDFFDQMKRKA 420
SGTRREE L+DE+ L+KVW+LR++L M E + +L+++ ET +N++F + ++
Sbjct 365 LLSGTRREELLLDEETLKKVWLLRRMLSAMTEEEGLTLILNKLSETSSNEEFLKLIDKEK 424
Query 421 A 421
A
Sbjct 425 A 425
>P52157 Transcription termination factor Rho [Streptomyces lividans]
Length=707
Score = 421 bits (1083), Expect = 3e-145
Identities = 208/369 (56%), Positives = 288/369 (78%), Gaps = 9/369 (2%)
Query 53 GVLEILSDGFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPKEGER--- 109
G+L+IL D + F+R++ YL GP+D+YVS +Q+R+ LR GD +TG +R PKEGER
Sbjct 336 GILDIL-DNYAFIRTSG--YLPGPNDVYVSLAQVRKNGLRKGDHLTGAVRQPKEGERREK 392
Query 110 YFALLKVNQINYDTPENSRNKILFENLTPLFPTEQLVMELGNGTTEDLTTRVVDLIAPIG 169
+ AL++++ +N PE+ R + F LTPL+P ++L +E G LTTR++DL+APIG
Sbjct 393 FNALVRLDSVNGMAPEHGRGRPEFNKLTPLYPQDRLRLETDPGV---LTTRIIDLVAPIG 449
Query 170 KGQRSIIVAPPKAGKTMLLQSIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRGEVVA 229
KGQR +IVAPPK GKTM++Q+IA +I NNPE L+V+L+DERPEEVT+M+R+V+GEV++
Sbjct 450 KGQRGLIVAPPKTGKTMIMQAIANAITHNNPECHLMVVLVDERPEEVTDMQRSVKGEVIS 509
Query 230 STFDESPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGV 289
STFD H VAE+ IE+AKRLVE DVV+LLDSITRL RAYN P+SG++L+GGV
Sbjct 510 STFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPASGRILSGGV 569
Query 290 DAHALERPKRFFGAARNIEEGGSLTIISTALIETGSKMDDVIYEEFKGTGNQEITLDRRI 349
D+ AL PKRFFGAARNIE+GGSLTI++TAL++TGS+MD+VI+EEFKGTGN E+ LDR++
Sbjct 570 DSTALYPPKRFFGAARNIEDGGSLTILATALVDTGSRMDEVIFEEFKGTGNAELKLDRKL 629
Query 350 AEKRVFPAMNIKKSGTRREERLMDEDNLRKVWILRKLLHPMDELAAMEFLLDRMKETKTN 409
A+KR+FPA+++ SGTR+EE L+ D L W LR++LH +D+ A+E LLD+MK+TK+N
Sbjct 630 ADKRIFPAVDVDASGTRKEEILLGSDELAITWKLRRVLHALDQQQAIELLLDKMKQTKSN 689
Query 410 DDFFDQMKR 418
+F Q+++
Sbjct 690 AEFLIQIQK 698
Lambda K H a alpha
0.320 0.138 0.383 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 2857140
Database: 55602d7e2c640d8b1568c376924de74a.SwissProt.fasta
Posted date: May 30, 2024 8:21 AM
Number of letters in database: 8,782
Number of sequences in database: 20
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
