BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: af19b4785fc48b3a8fa4ef7dcd091c23.SwissProt.fasta
           31 sequences; 3,055 total letters



Query= ACIAD3040

Length=98
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q6F874 Integration host factor subunit alpha [Acinetobacter bayly...  192     4e-69
A3M2B0 Integration host factor subunit alpha [Acinetobacter bauma...  185     2e-66
B0VV83 Integration host factor subunit alpha [Acinetobacter bauma...  185     2e-66
B2HTI2 Integration host factor subunit alpha [Acinetobacter bauma...  185     2e-66
B7I698 Integration host factor subunit alpha [Acinetobacter bauma...  185     2e-66
B7GZZ4 Integration host factor subunit alpha [Acinetobacter bauma...  185     2e-66
A1U2B7 Integration host factor subunit alpha [Marinobacter nautic...  137     1e-47
B1KRE5 Integration host factor subunit alpha [Shewanella woodyi (...  136     5e-47
A8FWI0 Integration host factor subunit alpha [Shewanella sedimini...  136     5e-47
B8CR59 Integration host factor subunit alpha [Shewanella piezotol...  136     5e-47
A8H5F1 Integration host factor subunit alpha [Shewanella pealeana...  136     5e-47
B0TQY4 Integration host factor subunit alpha [Shewanella halifaxe...  136     5e-47
A4XTS7 Integration host factor subunit alpha [Pseudomonas mendoci...  136     5e-47
A4VM16 Integration host factor subunit alpha [Stutzerimonas stutz...  135     8e-47
A1WU59 Integration host factor subunit alpha [Halorhodospira halo...  135     1e-46
A3QF32 Integration host factor subunit alpha [Shewanella loihica ...  135     1e-46
Q12NT8 Integration host factor subunit alpha [Shewanella denitrif...  135     1e-46
P0A127 Integration host factor subunit alpha [Pseudomonas putida]     134     3e-46
Q51472 Integration host factor subunit alpha [Pseudomonas aerugin...  134     3e-46
P23302 Integration host factor subunit alpha [Serratia marcescens]    130     7e-45
P37982 Integration host factor subunit alpha [Dickeya dadantii (s...  129     3e-44
P0A1S0 Integration host factor subunit alpha [Salmonella typhimur...  128     6e-44
P0A6X7 Integration host factor subunit alpha [Escherichia coli (s...  128     6e-44
P95516 Integration host factor subunit alpha [Mannheimia haemolyt...  116     3e-39
Q9F297 Integration host factor subunit alpha [Neisseria gonorrhoeae]  113     5e-38
Q9K4Q3 Integration host factor subunit alpha [Myxococcus xanthus]     92.0    4e-29
P30787 Integration host factor subunit alpha [Rhodobacter capsula...  90.1    1e-28
P0A3H0 DNA-binding protein HU [Geobacillus stearothermophilus]        78.6    3e-24
P0A3H1 DNA-binding protein HU [Bacillus caldolyticus]                 78.6    3e-24
P0A3H2 DNA-binding protein HU [Bacillus caldotenax]                   78.6    3e-24
Q9XB21 DNA-binding protein HU [Streptococcus mutans serotype c (s...  77.8    6e-24


>Q6F874 Integration host factor subunit alpha [Acinetobacter baylyi 
(strain ATCC 33305 / BD413 / ADP1)]
Length=97

 Score = 192 bits (487),  Expect = 4e-69
 Identities = 97/97 (100%), Positives = 97/97 (100%), Gaps = 0/97 (0%)

Query  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE  60
           MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE
Sbjct  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE  60

Query  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQE  97
           RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQE
Sbjct  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQE  97


>A3M2B0 Integration host factor subunit alpha [Acinetobacter baumannii 
(strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 
/ 5377)]
Length=98

 Score = 185 bits (469),  Expect = 2e-66
 Identities = 94/96 (98%), Positives = 94/96 (98%), Gaps = 0/96 (0%)

Query  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE  60
           MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGE VKLSGFGNFELRDKRE
Sbjct  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEQVKLSGFGNFELRDKRE  60

Query  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQ  96
           RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVG EQ
Sbjct  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGNEQ  96


>B0VV83 Integration host factor subunit alpha [Acinetobacter baumannii 
(strain SDF)]
Length=98

 Score = 185 bits (469),  Expect = 2e-66
 Identities = 94/96 (98%), Positives = 94/96 (98%), Gaps = 0/96 (0%)

Query  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE  60
           MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGE VKLSGFGNFELRDKRE
Sbjct  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEQVKLSGFGNFELRDKRE  60

Query  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQ  96
           RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVG EQ
Sbjct  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGNEQ  96


>B2HTI2 Integration host factor subunit alpha [Acinetobacter baumannii 
(strain ACICU)]
Length=98

 Score = 185 bits (469),  Expect = 2e-66
 Identities = 94/96 (98%), Positives = 94/96 (98%), Gaps = 0/96 (0%)

Query  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE  60
           MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGE VKLSGFGNFELRDKRE
Sbjct  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEQVKLSGFGNFELRDKRE  60

Query  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQ  96
           RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVG EQ
Sbjct  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGNEQ  96


>B7I698 Integration host factor subunit alpha [Acinetobacter baumannii 
(strain AB0057)]
Length=98

 Score = 185 bits (469),  Expect = 2e-66
 Identities = 94/96 (98%), Positives = 94/96 (98%), Gaps = 0/96 (0%)

Query  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE  60
           MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGE VKLSGFGNFELRDKRE
Sbjct  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEQVKLSGFGNFELRDKRE  60

Query  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQ  96
           RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVG EQ
Sbjct  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGNEQ  96


>B7GZZ4 Integration host factor subunit alpha [Acinetobacter baumannii 
(strain AB307-0294)]
Length=98

 Score = 185 bits (469),  Expect = 2e-66
 Identities = 94/96 (98%), Positives = 94/96 (98%), Gaps = 0/96 (0%)

Query  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE  60
           MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGE VKLSGFGNFELRDKRE
Sbjct  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEQVKLSGFGNFELRDKRE  60

Query  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQ  96
           RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVG EQ
Sbjct  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGNEQ  96


>A1U2B7 Integration host factor subunit alpha [Marinobacter nauticus 
(strain ATCC 700491 / DSM 11845 / VT8)]
Length=100

 Score = 137 bits (346),  Expect = 1e-47
 Identities = 69/92 (75%), Positives = 77/92 (84%), Gaps = 0/92 (0%)

Query  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE  60
           M ALTKADMA+ L E   LN+REAK+MVE FFDEI  AL   E VKLSGFGNF+LRDK++
Sbjct  1   MAALTKADMAERLYEELGLNKREAKEMVEAFFDEIRGALSHNEQVKLSGFGNFDLRDKKQ  60

Query  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRV  92
           RPGRNPKTGEEIPISARRVVTFR GQK +Q+V
Sbjct  61  RPGRNPKTGEEIPISARRVVTFRPGQKLKQKV  92


>B1KRE5 Integration host factor subunit alpha [Shewanella woodyi 
(strain ATCC 51908 / MS32)]
Length=97

 Score = 136 bits (342),  Expect = 5e-47
 Identities = 66/90 (73%), Positives = 77/90 (86%), Gaps = 0/90 (0%)

Query  3   ALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRERP  62
           ALTKA+MA+HL E   +N+R AK+MVE FF+EI QAL +GE VKLSGFGNF+LRDK +RP
Sbjct  2   ALTKAEMAEHLFETLGINKRVAKEMVEAFFEEIRQALESGEQVKLSGFGNFDLRDKNQRP  61

Query  63  GRNPKTGEEIPISARRVVTFRAGQKFRQRV  92
           GRNPKTGE+IPISARRVVTFR GQK + RV
Sbjct  62  GRNPKTGEDIPISARRVVTFRPGQKLKSRV  91


>A8FWI0 Integration host factor subunit alpha [Shewanella sediminis 
(strain HAW-EB3)]
Length=98

 Score = 136 bits (342),  Expect = 5e-47
 Identities = 66/90 (73%), Positives = 77/90 (86%), Gaps = 0/90 (0%)

Query  3   ALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRERP  62
           ALTKA+MA+HL E   +N+R AK+MVE FF+EI QAL +GE VKLSGFGNF+LRDK +RP
Sbjct  2   ALTKAEMAEHLFETLGINKRVAKEMVETFFEEIRQALESGEQVKLSGFGNFDLRDKNQRP  61

Query  63  GRNPKTGEEIPISARRVVTFRAGQKFRQRV  92
           GRNPKTGE+IPISARRVVTFR GQK + RV
Sbjct  62  GRNPKTGEDIPISARRVVTFRPGQKLKSRV  91


>B8CR59 Integration host factor subunit alpha [Shewanella piezotolerans 
(strain WP3 / JCM 13877)]
Length=98

 Score = 136 bits (342),  Expect = 5e-47
 Identities = 66/90 (73%), Positives = 77/90 (86%), Gaps = 0/90 (0%)

Query  3   ALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRERP  62
           ALTKA+MA+HL E   +N+R AK+MVE FF+EI QAL +GE VKLSGFGNF+LRDK +RP
Sbjct  2   ALTKAEMAEHLFETLGINKRVAKEMVETFFEEIRQALESGEQVKLSGFGNFDLRDKNQRP  61

Query  63  GRNPKTGEEIPISARRVVTFRAGQKFRQRV  92
           GRNPKTGE+IPISARRVVTFR GQK + RV
Sbjct  62  GRNPKTGEDIPISARRVVTFRPGQKLKSRV  91


>A8H5F1 Integration host factor subunit alpha [Shewanella pealeana 
(strain ATCC 700345 / ANG-SQ1)]
Length=98

 Score = 136 bits (342),  Expect = 5e-47
 Identities = 66/90 (73%), Positives = 77/90 (86%), Gaps = 0/90 (0%)

Query  3   ALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRERP  62
           ALTKA+MA+HL E   +N+R AK+MVE FF+EI QAL +GE VKLSGFGNF+LRDK +RP
Sbjct  2   ALTKAEMAEHLFETLGINKRVAKEMVETFFEEIRQALESGEQVKLSGFGNFDLRDKNQRP  61

Query  63  GRNPKTGEEIPISARRVVTFRAGQKFRQRV  92
           GRNPKTGE+IPISARRVVTFR GQK + RV
Sbjct  62  GRNPKTGEDIPISARRVVTFRPGQKLKSRV  91


>B0TQY4 Integration host factor subunit alpha [Shewanella halifaxensis 
(strain HAW-EB4)]
Length=98

 Score = 136 bits (342),  Expect = 5e-47
 Identities = 66/90 (73%), Positives = 77/90 (86%), Gaps = 0/90 (0%)

Query  3   ALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRERP  62
           ALTKA+MA+HL E   +N+R AK+MVE FF+EI QAL +GE VKLSGFGNF+LRDK +RP
Sbjct  2   ALTKAEMAEHLFETLGINKRVAKEMVETFFEEIRQALESGEQVKLSGFGNFDLRDKNQRP  61

Query  63  GRNPKTGEEIPISARRVVTFRAGQKFRQRV  92
           GRNPKTGE+IPISARRVVTFR GQK + RV
Sbjct  62  GRNPKTGEDIPISARRVVTFRPGQKLKSRV  91


>A4XTS7 Integration host factor subunit alpha [Pseudomonas mendocina 
(strain ymp)]
Length=100

 Score = 136 bits (342),  Expect = 5e-47
 Identities = 68/92 (74%), Positives = 78/92 (85%), Gaps = 0/92 (0%)

Query  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE  60
           M ALTKA+MA+ L E   LN+REAK++VELFF+EI QAL   E VKLSGFGNF+LRDKR+
Sbjct  1   MGALTKAEMAERLYEELGLNKREAKELVELFFEEIRQALELNEQVKLSGFGNFDLRDKRQ  60

Query  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRV  92
           RPGRNPKTGEEIPI+ARRVVTFR GQK + RV
Sbjct  61  RPGRNPKTGEEIPITARRVVTFRPGQKLKARV  92


>A4VM16 Integration host factor subunit alpha [Stutzerimonas stutzeri 
(strain A1501)]
Length=100

 Score = 135 bits (341),  Expect = 8e-47
 Identities = 68/92 (74%), Positives = 78/92 (85%), Gaps = 0/92 (0%)

Query  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE  60
           M ALTKA+MA+ L E   LN+REAK++VELFF+EI QAL   E VKLSGFGNF+LRDKR+
Sbjct  1   MGALTKAEMAERLYEELGLNKREAKELVELFFEEIRQALEHNEQVKLSGFGNFDLRDKRQ  60

Query  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRV  92
           RPGRNPKTGEEIPI+ARRVVTFR GQK + RV
Sbjct  61  RPGRNPKTGEEIPITARRVVTFRPGQKLKARV  92


>A1WU59 Integration host factor subunit alpha [Halorhodospira 
halophila (strain DSM 244 / SL1)]
Length=101

 Score = 135 bits (340),  Expect = 1e-46
 Identities = 71/99 (72%), Positives = 79/99 (80%), Gaps = 4/99 (4%)

Query  3   ALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRERP  62
           +LTKADMA+ L E   LN+REAK++VELFF+EI  AL  GE VKLS FGNFELRDK ERP
Sbjct  2   SLTKADMAERLFEEVGLNKREAKELVELFFEEIRTALENGEPVKLSSFGNFELRDKNERP  61

Query  63  GRNPKTGEEIPISARRVVTFRAGQKFRQRV----GTEQE  97
           GRNPKTGEEIPISARRVVTFR GQK + RV    GT +E
Sbjct  62  GRNPKTGEEIPISARRVVTFRPGQKLKSRVESYAGTREE  100


>A3QF32 Integration host factor subunit alpha [Shewanella loihica 
(strain ATCC BAA-1088 / PV-4)]
Length=98

 Score = 135 bits (339),  Expect = 1e-46
 Identities = 66/90 (73%), Positives = 76/90 (84%), Gaps = 0/90 (0%)

Query  3   ALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRERP  62
           ALTKA+MA+HL E   +N+R AK+MVE FF+EI QAL  GE VKLSGFGNF+LRDK +RP
Sbjct  2   ALTKAEMAEHLFETLGINKRVAKEMVEAFFEEIRQALENGEQVKLSGFGNFDLRDKNQRP  61

Query  63  GRNPKTGEEIPISARRVVTFRAGQKFRQRV  92
           GRNPKTGE+IPISARRVVTFR GQK + RV
Sbjct  62  GRNPKTGEDIPISARRVVTFRPGQKLKSRV  91


>Q12NT8 Integration host factor subunit alpha [Shewanella denitrificans 
(strain OS217 / ATCC BAA-1090 / DSM 15013)]
Length=99

 Score = 135 bits (339),  Expect = 1e-46
 Identities = 66/90 (73%), Positives = 77/90 (86%), Gaps = 0/90 (0%)

Query  3   ALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRERP  62
           ALTKA+MA+HL E   LN+R AK+MVE FF+EI +AL +GE VKLSGFGNF+LRDK +RP
Sbjct  2   ALTKAEMAEHLFETLGLNKRVAKEMVESFFEEIREALESGEQVKLSGFGNFDLRDKNQRP  61

Query  63  GRNPKTGEEIPISARRVVTFRAGQKFRQRV  92
           GRNPKTGE+IPISARRVVTFR GQK + RV
Sbjct  62  GRNPKTGEDIPISARRVVTFRPGQKLKARV  91


>P0A127 Integration host factor subunit alpha [Pseudomonas putida]
Length=100

 Score = 134 bits (337),  Expect = 3e-46
 Identities = 67/92 (73%), Positives = 77/92 (84%), Gaps = 0/92 (0%)

Query  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE  60
           M ALTKA+MA+ L E   LN+REAK++VELFF+EI  AL   E VKLSGFGNF+LRDKR+
Sbjct  1   MGALTKAEMAERLYEELGLNKREAKELVELFFEEIRHALEENEQVKLSGFGNFDLRDKRQ  60

Query  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRV  92
           RPGRNPKTGEEIPI+ARRVVTFR GQK + RV
Sbjct  61  RPGRNPKTGEEIPITARRVVTFRPGQKLKARV  92


>Q51472 Integration host factor subunit alpha [Pseudomonas aeruginosa 
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 
/ LMG 12228 / 1C / PRS 101 / PAO1)]
Length=100

 Score = 134 bits (337),  Expect = 3e-46
 Identities = 67/92 (73%), Positives = 78/92 (85%), Gaps = 0/92 (0%)

Query  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE  60
           M ALTKA++A+ L E   LN+REAK++VELFF+EI QAL   E VKLSGFGNF+LRDKR+
Sbjct  1   MGALTKAEIAERLYEELGLNKREAKELVELFFEEIRQALEHNEQVKLSGFGNFDLRDKRQ  60

Query  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRV  92
           RPGRNPKTGEEIPI+ARRVVTFR GQK + RV
Sbjct  61  RPGRNPKTGEEIPITARRVVTFRPGQKLKARV  92


>P23302 Integration host factor subunit alpha [Serratia marcescens]
Length=99

 Score = 130 bits (328),  Expect = 7e-45
 Identities = 62/90 (69%), Positives = 77/90 (86%), Gaps = 0/90 (0%)

Query  3   ALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRERP  62
           ALTKA+M++HL E   L++R+AK +VELFF+E+ +AL  GE VKLSGFGNF+LRDK +RP
Sbjct  2   ALTKAEMSEHLFEKLGLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP  61

Query  63  GRNPKTGEEIPISARRVVTFRAGQKFRQRV  92
           GRNPKTGE+IPI+ARRVVTFR GQK + RV
Sbjct  62  GRNPKTGEDIPITARRVVTFRPGQKLKSRV  91


>P37982 Integration host factor subunit alpha [Dickeya dadantii 
(strain 3937)]
Length=99

 Score = 129 bits (324),  Expect = 3e-44
 Identities = 61/90 (68%), Positives = 78/90 (87%), Gaps = 0/90 (0%)

Query  3   ALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRERP  62
           ALTKA+M+++L E   L++R+AK++VELFF+E+ +AL  GE VKLSGFGNF+LRDK +RP
Sbjct  2   ALTKAEMSEYLFEKLGLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP  61

Query  63  GRNPKTGEEIPISARRVVTFRAGQKFRQRV  92
           GRNPKTGE+IPI+ARRVVTFR GQK + RV
Sbjct  62  GRNPKTGEDIPITARRVVTFRPGQKLKSRV  91


>P0A1S0 Integration host factor subunit alpha [Salmonella typhimurium 
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=99

 Score = 128 bits (322),  Expect = 6e-44
 Identities = 61/90 (68%), Positives = 78/90 (87%), Gaps = 0/90 (0%)

Query  3   ALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRERP  62
           ALTKA+M+++L +   L++R+AK++VELFF+EI +AL  GE VKLSGFGNF+LRDK +RP
Sbjct  2   ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP  61

Query  63  GRNPKTGEEIPISARRVVTFRAGQKFRQRV  92
           GRNPKTGE+IPI+ARRVVTFR GQK + RV
Sbjct  62  GRNPKTGEDIPITARRVVTFRPGQKLKSRV  91


>P0A6X7 Integration host factor subunit alpha [Escherichia coli 
(strain K12)]
Length=99

 Score = 128 bits (322),  Expect = 6e-44
 Identities = 61/90 (68%), Positives = 78/90 (87%), Gaps = 0/90 (0%)

Query  3   ALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRERP  62
           ALTKA+M+++L +   L++R+AK++VELFF+EI +AL  GE VKLSGFGNF+LRDK +RP
Sbjct  2   ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP  61

Query  63  GRNPKTGEEIPISARRVVTFRAGQKFRQRV  92
           GRNPKTGE+IPI+ARRVVTFR GQK + RV
Sbjct  62  GRNPKTGEDIPITARRVVTFRPGQKLKSRV  91


>P95516 Integration host factor subunit alpha [Mannheimia haemolytica]
Length=99

 Score = 116 bits (291),  Expect = 3e-39
 Identities = 57/92 (62%), Positives = 71/92 (77%), Gaps = 0/92 (0%)

Query  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE  60
           M ALTK ++A++L E   L +R A + VELFF+EI  +L  GE VKLSGFGNF LR+K+ 
Sbjct  1   MMALTKIEIAENLIEKFGLEKRVANEFVELFFEEIRSSLENGEEVKLSGFGNFSLREKKA  60

Query  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRV  92
           RPGRNPKTGE + +SARRVV F+AGQK R+RV
Sbjct  61  RPGRNPKTGENVAVSARRVVVFKAGQKLRERV  92


>Q9F297 Integration host factor subunit alpha [Neisseria gonorrhoeae]
Length=96

 Score = 113 bits (283),  Expect = 5e-38
 Identities = 54/90 (60%), Positives = 73/90 (81%), Gaps = 1/90 (1%)

Query  4   LTKADMADHL-SELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRERP  62
           LTKA++AD L  +++++ +  AK++VELFF+EI   L +GE +K+SGFGNF+LRDK +RP
Sbjct  3   LTKAELADILVDKVSNVTKNSAKEIVELFFEEIRSTLASGEEIKISGFGNFQLRDKPQRP  62

Query  63  GRNPKTGEEIPISARRVVTFRAGQKFRQRV  92
           GRNPKTGEE+PI+ARRVVTF A QK +  V
Sbjct  63  GRNPKTGEEVPITARRVVTFHASQKLKGMV  92


>Q9K4Q3 Integration host factor subunit alpha [Myxococcus xanthus]
Length=129

 Score = 92.0 bits (227),  Expect = 4e-29
 Identities = 42/92 (46%), Positives = 65/92 (71%), Gaps = 0/92 (0%)

Query  4   LTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRERPG  63
           +TKAD+ + + E    +++E+ ++VEL FD + + L  G+ +K+SGFGNF++R K+ R G
Sbjct  1   MTKADIIEGVYEKVGFSKKESAEIVELVFDTLKETLERGDKIKISGFGNFQVRQKKARVG  60

Query  64  RNPKTGEEIPISARRVVTFRAGQKFRQRVGTE  95
           RNP+TG+EI ISARRV+TFR  Q  +  +  E
Sbjct  61  RNPQTGKEIEISARRVLTFRPSQVLKSALNGE  92


>P30787 Integration host factor subunit alpha [Rhodobacter capsulatus]
Length=100

 Score = 90.1 bits (222),  Expect = 1e-28
 Identities = 43/89 (48%), Positives = 59/89 (66%), Gaps = 0/89 (0%)

Query  4   LTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRERPG  63
           LT+ D+++ +     L+R E+ Q+VE     +S AL+ GE VK+S FG F +RDK  R G
Sbjct  6   LTRMDLSEAVFREVGLSRNESAQLVETVLQHMSDALVRGETVKISSFGTFSVRDKTSRMG  65

Query  64  RNPKTGEEIPISARRVVTFRAGQKFRQRV  92
           RNPKTGEE+PIS RRV++FR     + RV
Sbjct  66  RNPKTGEEVPISPRRVLSFRPSHLMKDRV  94


>P0A3H0 DNA-binding protein HU [Geobacillus stearothermophilus]
Length=90

 Score = 78.6 bits (192),  Expect = 3e-24
 Identities = 35/89 (39%), Positives = 61/89 (69%), Gaps = 0/89 (0%)

Query  4   LTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRERPG  63
           + K ++ + ++E + L++++A + V+  FD I++AL  G+ V+L GFGNFE+R++  R G
Sbjct  1   MNKTELINAVAETSGLSKKDATKAVDAVFDSITEALRKGDKVQLIGFGNFEVRERAARKG  60

Query  64  RNPKTGEEIPISARRVVTFRAGQKFRQRV  92
           RNP+TGEE+ I A +V  F+ G+  +  V
Sbjct  61  RNPQTGEEMEIPASKVPAFKPGKALKDAV  89


>P0A3H1 DNA-binding protein HU [Bacillus caldolyticus]
Length=90

 Score = 78.6 bits (192),  Expect = 3e-24
 Identities = 35/89 (39%), Positives = 61/89 (69%), Gaps = 0/89 (0%)

Query  4   LTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRERPG  63
           + K ++ + ++E + L++++A + V+  FD I++AL  G+ V+L GFGNFE+R++  R G
Sbjct  1   MNKTELINAVAETSGLSKKDATKAVDAVFDSITEALRKGDKVQLIGFGNFEVRERAARKG  60

Query  64  RNPKTGEEIPISARRVVTFRAGQKFRQRV  92
           RNP+TGEE+ I A +V  F+ G+  +  V
Sbjct  61  RNPQTGEEMEIPASKVPAFKPGKALKDAV  89


>P0A3H2 DNA-binding protein HU [Bacillus caldotenax]
Length=90

 Score = 78.6 bits (192),  Expect = 3e-24
 Identities = 35/89 (39%), Positives = 61/89 (69%), Gaps = 0/89 (0%)

Query  4   LTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRERPG  63
           + K ++ + ++E + L++++A + V+  FD I++AL  G+ V+L GFGNFE+R++  R G
Sbjct  1   MNKTELINAVAETSGLSKKDATKAVDAVFDSITEALRKGDKVQLIGFGNFEVRERAARKG  60

Query  64  RNPKTGEEIPISARRVVTFRAGQKFRQRV  92
           RNP+TGEE+ I A +V  F+ G+  +  V
Sbjct  61  RNPQTGEEMEIPASKVPAFKPGKALKDAV  89


>Q9XB21 DNA-binding protein HU [Streptococcus mutans serotype 
c (strain ATCC 700610 / UA159)]
Length=91

 Score = 77.8 bits (190),  Expect = 6e-24
 Identities = 37/87 (43%), Positives = 55/87 (63%), Gaps = 0/87 (0%)

Query  6   KADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRERPGRN  65
           K D+   ++E T L ++++   V+  F  +S  L  GE V+L GFGNFE+R++  R GRN
Sbjct  4   KQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGRN  63

Query  66  PKTGEEIPISARRVVTFRAGQKFRQRV  92
           P+TGEEI I A +V  F+AG+  +  V
Sbjct  64  PQTGEEIKIKASKVPAFKAGKALKDAV  90



Lambda      K        H        a         alpha
   0.324    0.137    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140298


  Database: af19b4785fc48b3a8fa4ef7dcd091c23.SwissProt.fasta
    Posted date:  May 9, 2024  9:49 PM
  Number of letters in database: 3,055
  Number of sequences in database:  31



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40