Comparative Genomics

ACIAD3047 / SwissProt Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: af1c3da1fd4f2e985f1e1c5417719583.SwissProt.fasta
           25 sequences; 1,890 total letters



Query= ACIAD3047

Length=65
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q6F867 Large ribosomal subunit protein bL35 [Acinetobacter baylyi...  130     6e-46
B0V5N7 Large ribosomal subunit protein bL35 [Acinetobacter bauman...  125     4e-44
B0VV92 Large ribosomal subunit protein bL35 [Acinetobacter bauman...  125     4e-44
B2HTH5 Large ribosomal subunit protein bL35 [Acinetobacter bauman...  125     4e-44
B7I693 Large ribosomal subunit protein bL35 [Acinetobacter bauman...  125     4e-44
B7H000 Large ribosomal subunit protein bL35 [Acinetobacter bauman...  125     4e-44
A5WHW7 Large ribosomal subunit protein bL35 [Psychrobacter sp. (s...  107     1e-36
Q1Q8C5 Large ribosomal subunit protein bL35 [Psychrobacter cryoha...  101     2e-34
Q4FQ63 Large ribosomal subunit protein bL35 [Psychrobacter arctic...  100     3e-34
Q0VNG0 Large ribosomal subunit protein bL35 [Alcanivorax borkumen...  85.5    4e-28
A4VM20 Large ribosomal subunit protein bL35 [Stutzerimonas stutze...  83.6    2e-27
Q82VV3 Large ribosomal subunit protein bL35 [Nitrosomonas europae...  79.7    8e-26
Q0ADN6 Large ribosomal subunit protein bL35 [Nitrosomonas eutroph...  78.6    2e-25
Q1QWK5 Large ribosomal subunit protein bL35 [Chromohalobacter sal...  78.2    3e-25
P0A164 Large ribosomal subunit protein bL35 [Pseudomonas syringae...  75.5    4e-24
O68845 Large ribosomal subunit protein bL35 [Vibrio cholerae sero...  65.5    4e-20
P49240 Large ribosomal subunit protein bL35 [Buchnera aphidicola ...  65.1    5e-20
P0A7Q1 Large ribosomal subunit protein bL35 [Escherichia coli (st...  61.6    1e-18
P14810 Large ribosomal subunit protein bL35c [Cyanophora paradoxa]    56.6    1e-16
P0A491 Large ribosomal subunit protein bL35 [Listeria monocytogen...  55.5    3e-16
P13069 Large ribosomal subunit protein bL35 [Geobacillus stearoth...  53.1    3e-15
P23326 Large ribosomal subunit protein bL35c [Spinacia oleracea]      48.5    1e-12
Q8VZ55 Large ribosomal subunit protein bL35c [Arabidopsis thaliana]   44.7    3e-11
P53921 Large ribosomal subunit protein bL35m [Saccharomyces cerev...  40.0    1e-09
A6ZRW2 Large ribosomal subunit protein bL35m [Saccharomyces cerev...  40.0    1e-09


>Q6F867 Large ribosomal subunit protein bL35 [Acinetobacter baylyi 
(strain ATCC 33305 / BD413 / ADP1)]
Length=64

 Score = 130 bits (327),  Expect = 6e-46
 Identities = 64/64 (100%), Positives = 64/64 (100%), Gaps = 0/64 (0%)

Query  1   MAKLKTRRGAAKRFKATANGFKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSDMNSVRRM  60
           MAKLKTRRGAAKRFKATANGFKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSDMNSVRRM
Sbjct  1   MAKLKTRRGAAKRFKATANGFKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSDMNSVRRM  60

Query  61  CPYI  64
           CPYI
Sbjct  61  CPYI  64


>B0V5N7 Large ribosomal subunit protein bL35 [Acinetobacter baumannii 
(strain AYE)]
Length=64

 Score = 125 bits (315),  Expect = 4e-44
 Identities = 62/64 (97%), Positives = 63/64 (98%), Gaps = 0/64 (0%)

Query  1   MAKLKTRRGAAKRFKATANGFKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSDMNSVRRM  60
           MAKLKTRRGAAKRFKATANGFKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSD+ SVRRM
Sbjct  1   MAKLKTRRGAAKRFKATANGFKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSDVASVRRM  60

Query  61  CPYI  64
           CPYI
Sbjct  61  CPYI  64


>B0VV92 Large ribosomal subunit protein bL35 [Acinetobacter baumannii 
(strain SDF)]
Length=64

 Score = 125 bits (315),  Expect = 4e-44
 Identities = 62/64 (97%), Positives = 63/64 (98%), Gaps = 0/64 (0%)

Query  1   MAKLKTRRGAAKRFKATANGFKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSDMNSVRRM  60
           MAKLKTRRGAAKRFKATANGFKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSD+ SVRRM
Sbjct  1   MAKLKTRRGAAKRFKATANGFKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSDVASVRRM  60

Query  61  CPYI  64
           CPYI
Sbjct  61  CPYI  64


>B2HTH5 Large ribosomal subunit protein bL35 [Acinetobacter baumannii 
(strain ACICU)]
Length=64

 Score = 125 bits (315),  Expect = 4e-44
 Identities = 62/64 (97%), Positives = 63/64 (98%), Gaps = 0/64 (0%)

Query  1   MAKLKTRRGAAKRFKATANGFKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSDMNSVRRM  60
           MAKLKTRRGAAKRFKATANGFKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSD+ SVRRM
Sbjct  1   MAKLKTRRGAAKRFKATANGFKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSDVASVRRM  60

Query  61  CPYI  64
           CPYI
Sbjct  61  CPYI  64


>B7I693 Large ribosomal subunit protein bL35 [Acinetobacter baumannii 
(strain AB0057)]
Length=64

 Score = 125 bits (315),  Expect = 4e-44
 Identities = 62/64 (97%), Positives = 63/64 (98%), Gaps = 0/64 (0%)

Query  1   MAKLKTRRGAAKRFKATANGFKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSDMNSVRRM  60
           MAKLKTRRGAAKRFKATANGFKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSD+ SVRRM
Sbjct  1   MAKLKTRRGAAKRFKATANGFKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSDVASVRRM  60

Query  61  CPYI  64
           CPYI
Sbjct  61  CPYI  64


>B7H000 Large ribosomal subunit protein bL35 [Acinetobacter baumannii 
(strain AB307-0294)]
Length=64

 Score = 125 bits (315),  Expect = 4e-44
 Identities = 62/64 (97%), Positives = 63/64 (98%), Gaps = 0/64 (0%)

Query  1   MAKLKTRRGAAKRFKATANGFKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSDMNSVRRM  60
           MAKLKTRRGAAKRFKATANGFKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSD+ SVRRM
Sbjct  1   MAKLKTRRGAAKRFKATANGFKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSDVASVRRM  60

Query  61  CPYI  64
           CPYI
Sbjct  61  CPYI  64


>A5WHW7 Large ribosomal subunit protein bL35 [Psychrobacter sp. 
(strain PRwf-1)]
Length=65

 Score = 107 bits (266),  Expect = 1e-36
 Identities = 51/62 (82%), Positives = 57/62 (92%), Gaps = 0/62 (0%)

Query  3   KLKTRRGAAKRFKATANGFKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSDMNSVRRMCP  62
           K+KT+RGAAKRFK TANGFKRKQAFKRHILTKKS KRIRQLRG  +VHV+D+ +VRRMCP
Sbjct  4   KMKTKRGAAKRFKKTANGFKRKQAFKRHILTKKSPKRIRQLRGTKLVHVADVAAVRRMCP  63

Query  63  YI  64
           YI
Sbjct  64  YI  65


>Q1Q8C5 Large ribosomal subunit protein bL35 [Psychrobacter cryohalolentis 
(strain ATCC BAA-1226 / DSM 17306 / VKM B-2378 
/ K5)]
Length=65

 Score = 101 bits (251),  Expect = 2e-34
 Identities = 50/62 (81%), Positives = 53/62 (85%), Gaps = 0/62 (0%)

Query  3   KLKTRRGAAKRFKATANGFKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSDMNSVRRMCP  62
           K+KTR GAAKRFK TANGFKRKQAFK HILTKKS KRIRQLRG  +VH SD  +VRRMCP
Sbjct  4   KMKTRSGAAKRFKKTANGFKRKQAFKSHILTKKSPKRIRQLRGLKLVHKSDEAAVRRMCP  63

Query  63  YI  64
           YI
Sbjct  64  YI  65


>Q4FQ63 Large ribosomal subunit protein bL35 [Psychrobacter arcticus 
(strain DSM 17307 / VKM B-2377 / 273-4)]
Length=65

 Score = 100 bits (250),  Expect = 3e-34
 Identities = 51/62 (82%), Positives = 53/62 (85%), Gaps = 0/62 (0%)

Query  3   KLKTRRGAAKRFKATANGFKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSDMNSVRRMCP  62
           K+KTR GAAKRFK TANGFKRKQAFK HILTKKSAKRIRQLRG  MV  SD  +VRRMCP
Sbjct  4   KMKTRSGAAKRFKKTANGFKRKQAFKSHILTKKSAKRIRQLRGLKMVDKSDEAAVRRMCP  63

Query  63  YI  64
           YI
Sbjct  64  YI  65


>Q0VNG0 Large ribosomal subunit protein bL35 [Alcanivorax borkumensis 
(strain ATCC 700651 / DSM 11573 / NCIMB 13689 / SK2)]
Length=64

 Score = 85.5 bits (210),  Expect = 4e-28
 Identities = 43/63 (68%), Positives = 50/63 (79%), Gaps = 0/63 (0%)

Query  1   MAKLKTRRGAAKRFKATANGFKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSDMNSVRRM  60
           M K+KT RGAAKRFK TA+GFKRKQAFK HILTKKS+K IR+LR    VH +D+  V+RM
Sbjct  1   MPKIKTNRGAAKRFKKTASGFKRKQAFKNHILTKKSSKTIRKLRPKQEVHENDVALVKRM  60

Query  61  CPY  63
            PY
Sbjct  61  MPY  63


>A4VM20 Large ribosomal subunit protein bL35 [Stutzerimonas stutzeri 
(strain A1501)]
Length=64

 Score = 83.6 bits (205),  Expect = 2e-27
 Identities = 41/60 (68%), Positives = 45/60 (75%), Gaps = 0/60 (0%)

Query  1   MAKLKTRRGAAKRFKATANGFKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSDMNSVRRM  60
           M K+KT+ GAAKRFK TANGFK K AFK HILTK + KR RQLRGC  VH SD+  V RM
Sbjct  1   MPKMKTKSGAAKRFKKTANGFKHKHAFKSHILTKMTTKRKRQLRGCSQVHPSDVAKVERM  60


>Q82VV3 Large ribosomal subunit protein bL35 [Nitrosomonas europaea 
(strain ATCC 19718 / CIP 103999 / KCTC 2705 / NBRC 14298)]
Length=65

 Score = 79.7 bits (195),  Expect = 8e-26
 Identities = 42/64 (66%), Positives = 46/64 (72%), Gaps = 1/64 (2%)

Query  1   MAKLKTRRGAAKRFKATANG-FKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSDMNSVRR  59
           M K+KT++ AAKRFK  A G  KR QAFKRHILTKK+ K  RQLRG   VH SDM SVR 
Sbjct  1   MPKMKTKKSAAKRFKVRAGGSIKRSQAFKRHILTKKTTKNKRQLRGVAAVHASDMVSVRV  60

Query  60  MCPY  63
           M PY
Sbjct  61  MLPY  64


>Q0ADN6 Large ribosomal subunit protein bL35 [Nitrosomonas eutropha 
(strain DSM 101675 / C91 / Nm57)]
Length=65

 Score = 78.6 bits (192),  Expect = 2e-25
 Identities = 40/64 (63%), Positives = 47/64 (73%), Gaps = 1/64 (2%)

Query  1   MAKLKTRRGAAKRFKATANG-FKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSDMNSVRR  59
           M K+KT++ AAKRF+  A G  KR QAFKRHILTKK+ K  RQLRG  +VH SD+ SVR 
Sbjct  1   MPKMKTKKSAAKRFRIRAGGSIKRSQAFKRHILTKKTTKNKRQLRGMTVVHASDVASVRA  60

Query  60  MCPY  63
           M PY
Sbjct  61  MLPY  64


>Q1QWK5 Large ribosomal subunit protein bL35 [Chromohalobacter 
salexigens (strain ATCC BAA-138 / DSM 3043 / CIP 106854 / NCIMB 
13768 / 1H11)]
Length=64

 Score = 78.2 bits (191),  Expect = 3e-25
 Identities = 37/62 (60%), Positives = 46/62 (74%), Gaps = 0/62 (0%)

Query  1   MAKLKTRRGAAKRFKATANGFKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSDMNSVRRM  60
           M K+K+  GAAKRFK TA+GFK KQ+F+ HILTKKS KR RQLRG   +H +D   ++RM
Sbjct  1   MPKIKSNSGAAKRFKKTAHGFKHKQSFRSHILTKKSTKRKRQLRGMKQIHDADKQLIQRM  60

Query  61  CP  62
            P
Sbjct  61  LP  62


>P0A164 Large ribosomal subunit protein bL35 [Pseudomonas syringae 
pv. syringae]
Length=64

 Score = 75.5 bits (184),  Expect = 4e-24
 Identities = 38/60 (63%), Positives = 43/60 (72%), Gaps = 0/60 (0%)

Query  1   MAKLKTRRGAAKRFKATANGFKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSDMNSVRRM  60
           M K+KT+ GAAKRF  TANG K K AFK HILTK S KR RQLRG  ++H SD+  V RM
Sbjct  1   MPKMKTKSGAAKRFLKTANGIKHKHAFKSHILTKMSTKRKRQLRGSSLLHPSDVAKVERM  60


>O68845 Large ribosomal subunit protein bL35 [Vibrio cholerae 
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)]
Length=64

 Score = 65.5 bits (158),  Expect = 4e-20
 Identities = 33/63 (52%), Positives = 42/63 (67%), Gaps = 0/63 (0%)

Query  1   MAKLKTRRGAAKRFKATANGFKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSDMNSVRRM  60
           M K+K  +GAAKRFK TA G K K A KRHILTK++ K  RQLR   ++   ++ +V RM
Sbjct  1   MPKMKNNKGAAKRFKKTAGGIKYKHATKRHILTKRTTKNKRQLRPNAILPKCELAAVARM  60

Query  61  CPY  63
            PY
Sbjct  61  LPY  63


>P49240 Large ribosomal subunit protein bL35 [Buchnera aphidicola 
subsp. Schizaphis graminum (strain Sg)]
Length=65

 Score = 65.1 bits (157),  Expect = 5e-20
 Identities = 35/64 (55%), Positives = 44/64 (69%), Gaps = 1/64 (2%)

Query  1   MAKLKTRRGAAKRFKATANG-FKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSDMNSVRR  59
           M K+KT R AAKRFK TA+G FKRKQA  RHILTKK+  + R LR  ++V   D++ V+ 
Sbjct  1   MPKIKTLRSAAKRFKKTASGKFKRKQANLRHILTKKTTTKKRHLRPKILVSKGDISKVKS  60

Query  60  MCPY  63
             PY
Sbjct  61  FLPY  64


>P0A7Q1 Large ribosomal subunit protein bL35 [Escherichia coli 
(strain K12)]
Length=65

 Score = 61.6 bits (148),  Expect = 1e-18
 Identities = 36/64 (56%), Positives = 39/64 (61%), Gaps = 1/64 (2%)

Query  1   MAKLKTRRGAAKRFKATANG-FKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSDMNSVRR  59
           M K+KT RGAAKRFK T  G FK K A  RHILTKK+ KR R LR   MV   D+  V  
Sbjct  1   MPKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIA  60

Query  60  MCPY  63
             PY
Sbjct  61  CLPY  64


>P14810 Large ribosomal subunit protein bL35c [Cyanophora paradoxa]
Length=65

 Score = 56.6 bits (135),  Expect = 1e-16
 Identities = 30/65 (46%), Positives = 39/65 (60%), Gaps = 1/65 (2%)

Query  1   MAKLKTRRGAAKRFKATANG-FKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSDMNSVRR  59
           M KLKTR+ AAKR+KA  N    R++AF+ H+L KKS  R RQL   V+    D   +  
Sbjct  1   MYKLKTRKAAAKRYKAVGNKKISRRKAFRSHLLQKKSTNRKRQLSQVVIASPGDTKKIYL  60

Query  60  MCPYI  64
           M PY+
Sbjct  61  MLPYL  65


>P0A491 Large ribosomal subunit protein bL35 [Listeria monocytogenes 
serovar 1/2a (strain ATCC BAA-679 / EGD-e)]
Length=66

 Score = 55.5 bits (132),  Expect = 3e-16
 Identities = 28/61 (46%), Positives = 37/61 (61%), Gaps = 1/61 (2%)

Query  1   MAKLKTRRGAAKRFKATANG-FKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSDMNSVRR  59
           M K+KT RG+AKRFK T +G  KR+  F  H+   KS K+ R+LR   MV   D   +R+
Sbjct  1   MPKMKTHRGSAKRFKRTGSGKLKRRHGFTSHMFANKSQKQKRKLRKSAMVSAGDFKRIRQ  60

Query  60  M  60
           M
Sbjct  61  M  61


>P13069 Large ribosomal subunit protein bL35 [Geobacillus stearothermophilus]
Length=66

 Score = 53.1 bits (126),  Expect = 3e-15
 Identities = 27/61 (44%), Positives = 37/61 (61%), Gaps = 1/61 (2%)

Query  1   MAKLKTRRGAAKRFKATANG-FKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSDMNSVRR  59
           M K+KT RG+AKRFK TA+G  KR  A+  H+   K+ K+ R LR   +V   D   +R+
Sbjct  1   MPKMKTHRGSAKRFKKTASGKLKRGHAYTSHLFANKTKKQKRHLRKATLVSPGDFKRIRQ  60

Query  60  M  60
           M
Sbjct  61  M  61


>P23326 Large ribosomal subunit protein bL35c [Spinacia oleracea]
Length=159

 Score = 48.5 bits (114),  Expect = 1e-12
 Identities = 25/63 (40%), Positives = 39/63 (62%), Gaps = 1/63 (2%)

Query  3    KLKTRRGAAKRFKATANG-FKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSDMNSVRRMC  61
            K+KT + +AKRF+ T  G   R++A K+H+L KK+ KR  +L   + V  SD ++V    
Sbjct  91   KMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTKRKNRLSKLIQVDRSDYDNVIGAL  150

Query  62   PYI  64
            PY+
Sbjct  151  PYL  153


>Q8VZ55 Large ribosomal subunit protein bL35c [Arabidopsis thaliana]
Length=145

 Score = 44.7 bits (104),  Expect = 3e-11
 Identities = 24/63 (38%), Positives = 39/63 (62%), Gaps = 1/63 (2%)

Query  3    KLKTRRGAAKRFKATANG-FKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSDMNSVRRMC  61
            K+KT + +AKRF+ T  G   R+++ K+H+L KK+ KR  +L     V+ SD ++V    
Sbjct  76   KMKTHKASAKRFRVTGRGKIVRRRSGKQHLLAKKNNKRKLRLSKMTEVNRSDYDNVIGAL  135

Query  62   PYI  64
            PY+
Sbjct  136  PYL  138


>P53921 Large ribosomal subunit protein bL35m [Saccharomyces cerevisiae 
(strain ATCC 204508 / S288c)]
Length=115

 Score = 40.0 bits (92),  Expect = 1e-09
 Identities = 20/60 (33%), Positives = 34/60 (57%), Gaps = 0/60 (0%)

Query  4    LKTRRGAAKRFKATANGFKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSDMNSVRRMCPY  63
            +KT +G AKR++ T N FKR  A ++H     S + ++ L G  + H +    ++R+ PY
Sbjct  55   MKTHKGTAKRWRRTGNTFKRGIAGRKHGNIGWSHRSLKALTGRKIAHPAYSKHLKRLLPY  114


>A6ZRW2 Large ribosomal subunit protein bL35m [Saccharomyces cerevisiae 
(strain YJM789)]
Length=115

 Score = 40.0 bits (92),  Expect = 1e-09
 Identities = 20/60 (33%), Positives = 34/60 (57%), Gaps = 0/60 (0%)

Query  4    LKTRRGAAKRFKATANGFKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSDMNSVRRMCPY  63
            +KT +G AKR++ T N FKR  A ++H     S + ++ L G  + H +    ++R+ PY
Sbjct  55   MKTHKGTAKRWRRTGNTFKRGIAGRKHGNIGWSHRSLKALTGRKIAHPAYSKHLKRLLPY  114



Lambda      K        H        a         alpha
   0.340    0.140    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 52890


  Database: af1c3da1fd4f2e985f1e1c5417719583.SwissProt.fasta
    Posted date:  May 30, 2024  10:42 AM
  Number of letters in database: 1,890
  Number of sequences in database:  25



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40