BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 95ce5222501d9ea66e196315e7bd5c87.SwissProt.fasta
21 sequences; 9,262 total letters
Query= ACIAD3069
Length=464
Score E
Sequences producing significant alignments: (Bits) Value
Q6F847 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Acine... 936 0.0
B0V5N2 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Acine... 681 0.0
B7H018 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Acine... 681 0.0
B2HTF7 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Acine... 677 0.0
B7I675 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Acine... 674 0.0
B0VKL3 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Acine... 672 0.0
Q1QDU2 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Psych... 484 6e-172
Q4FUU5 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Psych... 483 2e-171
Q0VP26 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Alcan... 399 2e-139
A1U2U9 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Marin... 396 4e-138
Q0A8Y4 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Alkal... 374 2e-129
P55135 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Esche... 290 4e-97
E1SSZ4 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Ferri... 283 4e-94
P55136 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Photo... 188 3e-60
O31503 23S rRNA (uracil-C(5))-methyltransferase RlmCD [Bacillus s... 159 6e-47
D0JIM5 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC [Yersin... 108 4e-29
Q9UZR7 tRNA (uracil(54)-C(5))-methyltransferase [Pyrococcus abyss... 108 8e-29
Q9UZK1 23S rRNA (uracil(747)-C(5))-methyltransferase [Pyrococcus ... 100 4e-26
P33753 tRNA (uracil(54)-C(5))-methyltransferase [Saccharomyces ce... 95.9 4e-24
P23003 tRNA/tmRNA (uracil-C(5))-methyltransferase [Escherichia co... 90.9 5e-23
P22038 tRNA/tmRNA (uracil-C(5))-methyltransferase [Salmonella typ... 86.7 1e-21
>Q6F847 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Acinetobacter
baylyi (strain ATCC 33305 / BD413 / ADP1)]
Length=463
Score = 936 bits (2419), Expect = 0.0
Identities = 462/463 (99%), Positives = 463/463 (100%), Gaps = 0/463 (0%)
Query 1 LKKHASSRSKSATVYTFRIESFSHEGRGIAHFGEFAEHPQTKHGKKVFVRYALPGEVVRA 60
+KKHASSRSKSATVYTFRIESFSHEGRGIAHFGEFAEHPQTKHGKKVFVRYALPGEVVRA
Sbjct 1 MKKHASSRSKSATVYTFRIESFSHEGRGIAHFGEFAEHPQTKHGKKVFVRYALPGEVVRA 60
Query 61 KITHETKRFEEGELIEILDQPSIDRIVPVCPHFGVCGGCSMQHITPNQQIQIKQHVLASH 120
KITHETKRFEEGELIEILDQPSIDRIVPVCPHFGVCGGCSMQHITPNQQIQIKQHVLASH
Sbjct 61 KITHETKRFEEGELIEILDQPSIDRIVPVCPHFGVCGGCSMQHITPNQQIQIKQHVLASH 120
Query 121 LQHFAGLTVNEWLTPVRSLRADYRRRARVGVRYIPAKQKLIMGFREHGSNRLTPIQSCAV 180
LQHFAGLTVNEWLTPVRSLRADYRRRARVGVRYIPAKQKLIMGFREHGSNRLTPIQSCAV
Sbjct 121 LQHFAGLTVNEWLTPVRSLRADYRRRARVGVRYIPAKQKLIMGFREHGSNRLTPIQSCAV 180
Query 181 LDQRLSQALPELYDVLNRLVAKAEIGHIELAMGDDEVSLLVRHLNTLPDSDITQLCDYAQ 240
LDQRLSQALPELYDVLNRLVAKAEIGHIELAMGDDEVSLLVRHLNTLPDSDITQLCDYAQ
Sbjct 181 LDQRLSQALPELYDVLNRLVAKAEIGHIELAMGDDEVSLLVRHLNTLPDSDITQLCDYAQ 240
Query 241 HKNWQLYLQAKGSDSLKRVDRSGAEMRLHYAVPAFNLNFAFSPLDFTQVNATVNQQMLKL 300
HKNWQLYLQAKGSDSLKRVDRSGAEMRLHYAVPAFNLNFAFSPLDFTQVNATVNQQMLKL
Sbjct 241 HKNWQLYLQAKGSDSLKRVDRSGAEMRLHYAVPAFNLNFAFSPLDFTQVNATVNQQMLKL 300
Query 301 ACDLLKLQKGEHVLDLFCGLGNFSLPLARCVGDTGRVVGVEGSEEMVQRAFENAAQNALH 360
ACDLLKLQKGEHVLDLFCGLGNFSLPLARCVGDTGRVVGVEGSEEMVQRAFENAAQNALH
Sbjct 301 ACDLLKLQKGEHVLDLFCGLGNFSLPLARCVGDTGRVVGVEGSEEMVQRAFENAAQNALH 360
Query 361 NVEFYSQDLTKDFSHHSWANQGFDALLIDPPRSGAFEIMHYIANFEAKRIVYVSCNPATL 420
NVEFYSQDLTKDFSHHSWANQGFDALLIDPPRSGAFEIMHYIANFEAKRIVYVSCNPATL
Sbjct 361 NVEFYSQDLTKDFSHHSWANQGFDALLIDPPRSGAFEIMHYIANFEAKRIVYVSCNPATL 420
Query 421 ARDAGVLAQHGYQLKKVGVMDMFTHTEHVESIALFEKIQEIND 463
ARDAGVLAQHGYQLKKVGVMDMFTHTEHVESIALFEKIQEIND
Sbjct 421 ARDAGVLAQHGYQLKKVGVMDMFTHTEHVESIALFEKIQEIND 463
>B0V5N2 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Acinetobacter
baumannii (strain AYE)]
Length=463
Score = 681 bits (1757), Expect = 0.0
Identities = 321/463 (69%), Positives = 385/463 (83%), Gaps = 0/463 (0%)
Query 1 LKKHASSRSKSATVYTFRIESFSHEGRGIAHFGEFAEHPQTKHGKKVFVRYALPGEVVRA 60
+K+ A SR Y F++E+ SHEGRGIAH+G +HP KHGKKVF+RYALPGE V+A
Sbjct 1 MKQQAKSRKPQQPEYIFQVETLSHEGRGIAHYGSHPDHPADKHGKKVFIRYALPGETVKA 60
Query 61 KITHETKRFEEGELIEILDQPSIDRIVPVCPHFGVCGGCSMQHITPNQQIQIKQHVLASH 120
+ITHE KR EE E++E+L +PS +R+ VCPH+G+CGGCSMQHI P++QI +KQ+VL SH
Sbjct 61 QITHEAKRLEEAEMVELLAEPSANRVEAVCPHYGICGGCSMQHIHPDEQIHLKQNVLQSH 120
Query 121 LQHFAGLTVNEWLTPVRSLRADYRRRARVGVRYIPAKQKLIMGFREHGSNRLTPIQSCAV 180
LQHFAG+ +WL P+RSL++DYRRRAR+GVRY+P + +LI+GFREH SNRLT I +C+V
Sbjct 121 LQHFAGIQPEQWLEPIRSLQSDYRRRARIGVRYLPKQDRLILGFREHHSNRLTSIHTCSV 180
Query 181 LDQRLSQALPELYDVLNRLVAKAEIGHIELAMGDDEVSLLVRHLNTLPDSDITQLCDYAQ 240
LD++LS LPEL ++L L KA IGH+ELA GD E+SLLVRH+ L ++D+ QL +A
Sbjct 181 LDKKLSDNLPELRNLLQSLKGKAHIGHVELAKGDHEISLLVRHIEKLNNADVNQLRQFAL 240
Query 241 HKNWQLYLQAKGSDSLKRVDRSGAEMRLHYAVPAFNLNFAFSPLDFTQVNATVNQQMLKL 300
HK WQLYLQ KG +SL+R+D MRLHYA+ AF++NFAFSPLDFTQVNATVN+QM++L
Sbjct 241 HKGWQLYLQPKGPESLRRIDEEQGAMRLHYALNAFDVNFAFSPLDFTQVNATVNEQMVQL 300
Query 301 ACDLLKLQKGEHVLDLFCGLGNFSLPLARCVGDTGRVVGVEGSEEMVQRAFENAAQNALH 360
AC+LL+LQ+GE VLDLFCGLGNFSLPLARCVG G+VVGVE SEEMVQRA +NA +N L
Sbjct 301 ACELLQLQQGERVLDLFCGLGNFSLPLARCVGAKGQVVGVEASEEMVQRATDNAKRNNLV 360
Query 361 NVEFYSQDLTKDFSHHSWANQGFDALLIDPPRSGAFEIMHYIANFEAKRIVYVSCNPATL 420
F+SQDLTKDFSHHSWANQGFDALLIDPPR+GA+EIM Y+ NF AKRIVYVSCNPATL
Sbjct 361 QASFFSQDLTKDFSHHSWANQGFDALLIDPPRAGAYEIMQYVPNFGAKRIVYVSCNPATL 420
Query 421 ARDAGVLAQHGYQLKKVGVMDMFTHTEHVESIALFEKIQEIND 463
ARDAGVL QHGYQLKK VMDMFTHTEHVESIALFEKIQEIND
Sbjct 421 ARDAGVLVQHGYQLKKAAVMDMFTHTEHVESIALFEKIQEIND 463
>B7H018 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Acinetobacter
baumannii (strain AB307-0294)]
Length=463
Score = 681 bits (1757), Expect = 0.0
Identities = 321/463 (69%), Positives = 385/463 (83%), Gaps = 0/463 (0%)
Query 1 LKKHASSRSKSATVYTFRIESFSHEGRGIAHFGEFAEHPQTKHGKKVFVRYALPGEVVRA 60
+K+ A SR Y F++E+ SHEGRGIAH+G +HP KHGKKVF+RYALPGE V+A
Sbjct 1 MKQQAKSRKPQQPEYIFQVETLSHEGRGIAHYGSHPDHPADKHGKKVFIRYALPGETVKA 60
Query 61 KITHETKRFEEGELIEILDQPSIDRIVPVCPHFGVCGGCSMQHITPNQQIQIKQHVLASH 120
+ITHE KR EE E++E+L +PS +R+ VCPH+G+CGGCSMQHI P++QI +KQ+VL SH
Sbjct 61 QITHEAKRLEEAEMVELLAEPSANRVEAVCPHYGICGGCSMQHIHPDEQIHLKQNVLQSH 120
Query 121 LQHFAGLTVNEWLTPVRSLRADYRRRARVGVRYIPAKQKLIMGFREHGSNRLTPIQSCAV 180
LQHFAG+ +WL P+RSL++DYRRRAR+GVRY+P + +LI+GFREH SNRLT I +C+V
Sbjct 121 LQHFAGIQPEQWLEPIRSLQSDYRRRARIGVRYLPKQDRLILGFREHHSNRLTSIHTCSV 180
Query 181 LDQRLSQALPELYDVLNRLVAKAEIGHIELAMGDDEVSLLVRHLNTLPDSDITQLCDYAQ 240
LD++LS LPEL ++L L KA IGH+ELA GD E+SLLVRH+ L ++D+ QL +A
Sbjct 181 LDKKLSDNLPELRNLLQSLKGKAHIGHVELAKGDHEISLLVRHIEKLNNADVNQLRQFAL 240
Query 241 HKNWQLYLQAKGSDSLKRVDRSGAEMRLHYAVPAFNLNFAFSPLDFTQVNATVNQQMLKL 300
HK WQLYLQ KG +SL+R+D MRLHYA+ AF++NFAFSPLDFTQVNATVN+QM++L
Sbjct 241 HKGWQLYLQPKGPESLRRIDEEQGAMRLHYALNAFDVNFAFSPLDFTQVNATVNEQMVQL 300
Query 301 ACDLLKLQKGEHVLDLFCGLGNFSLPLARCVGDTGRVVGVEGSEEMVQRAFENAAQNALH 360
AC+LL+LQ+GE VLDLFCGLGNFSLPLARCVG G+VVGVE SEEMVQRA +NA +N L
Sbjct 301 ACELLQLQQGERVLDLFCGLGNFSLPLARCVGAKGQVVGVEASEEMVQRATDNAKRNNLV 360
Query 361 NVEFYSQDLTKDFSHHSWANQGFDALLIDPPRSGAFEIMHYIANFEAKRIVYVSCNPATL 420
F+SQDLTKDFSHHSWANQGFDALLIDPPR+GA+EIM Y+ NF AKRIVYVSCNPATL
Sbjct 361 QASFFSQDLTKDFSHHSWANQGFDALLIDPPRAGAYEIMQYVPNFGAKRIVYVSCNPATL 420
Query 421 ARDAGVLAQHGYQLKKVGVMDMFTHTEHVESIALFEKIQEIND 463
ARDAGVL QHGYQLKK VMDMFTHTEHVESIALFEKIQEIND
Sbjct 421 ARDAGVLVQHGYQLKKAAVMDMFTHTEHVESIALFEKIQEIND 463
>B2HTF7 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Acinetobacter
baumannii (strain ACICU)]
Length=463
Score = 677 bits (1746), Expect = 0.0
Identities = 320/463 (69%), Positives = 384/463 (83%), Gaps = 0/463 (0%)
Query 1 LKKHASSRSKSATVYTFRIESFSHEGRGIAHFGEFAEHPQTKHGKKVFVRYALPGEVVRA 60
+K+ A SR Y F++E+ SHEGRGIAH+G +HP KHGKKVF+RYALPGE V+A
Sbjct 1 MKQQAKSRKPQQPEYIFQVETLSHEGRGIAHYGSHPDHPADKHGKKVFIRYALPGETVKA 60
Query 61 KITHETKRFEEGELIEILDQPSIDRIVPVCPHFGVCGGCSMQHITPNQQIQIKQHVLASH 120
+ITHE KR EE E++ +L +PS +R+ VCPH+G+CGGCSMQHI P++QI +KQ+VL SH
Sbjct 61 QITHEAKRLEEAEMVALLAEPSANRVEAVCPHYGICGGCSMQHIHPDEQICLKQNVLQSH 120
Query 121 LQHFAGLTVNEWLTPVRSLRADYRRRARVGVRYIPAKQKLIMGFREHGSNRLTPIQSCAV 180
LQHFAG+ +WL P+RSL++DYRRRAR+GVRY+P + +LI+GFREH SNRLT I +C+V
Sbjct 121 LQHFAGIQPEQWLEPIRSLQSDYRRRARIGVRYLPKQDRLILGFREHHSNRLTSIHTCSV 180
Query 181 LDQRLSQALPELYDVLNRLVAKAEIGHIELAMGDDEVSLLVRHLNTLPDSDITQLCDYAQ 240
LD++LS +LPEL ++L L KA IGH+ELA GD E SLLVRH+ L ++D+ QL +A
Sbjct 181 LDKKLSDSLPELRNLLQSLKGKAHIGHVELAKGDYETSLLVRHIEKLNNADVNQLRQFAL 240
Query 241 HKNWQLYLQAKGSDSLKRVDRSGAEMRLHYAVPAFNLNFAFSPLDFTQVNATVNQQMLKL 300
HK WQLYLQ KG +SL+R+D MRLHYA+ AF++NFAFSPLDFTQVNATVN+QM++L
Sbjct 241 HKGWQLYLQPKGPESLRRIDEEQGAMRLHYALNAFDVNFAFSPLDFTQVNATVNEQMVQL 300
Query 301 ACDLLKLQKGEHVLDLFCGLGNFSLPLARCVGDTGRVVGVEGSEEMVQRAFENAAQNALH 360
AC+LL+LQ+GE VLDLFCGLGNFSLPLARCVG G+VVGVE SEEMVQRA +NA +N L
Sbjct 301 ACELLQLQQGERVLDLFCGLGNFSLPLARCVGAKGQVVGVEASEEMVQRATDNAKRNNLV 360
Query 361 NVEFYSQDLTKDFSHHSWANQGFDALLIDPPRSGAFEIMHYIANFEAKRIVYVSCNPATL 420
F+SQDLTKDFSHHSWANQGFDALLIDPPR+GA+EIM Y+ NF AKRIVYVSCNPATL
Sbjct 361 QASFFSQDLTKDFSHHSWANQGFDALLIDPPRAGAYEIMQYVPNFGAKRIVYVSCNPATL 420
Query 421 ARDAGVLAQHGYQLKKVGVMDMFTHTEHVESIALFEKIQEIND 463
ARDAGVL QHGYQLKK VMDMFTHTEHVESIALFEKIQEIND
Sbjct 421 ARDAGVLVQHGYQLKKAAVMDMFTHTEHVESIALFEKIQEIND 463
>B7I675 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Acinetobacter
baumannii (strain AB0057)]
Length=462
Score = 674 bits (1738), Expect = 0.0
Identities = 320/463 (69%), Positives = 383/463 (83%), Gaps = 1/463 (0%)
Query 1 LKKHASSRSKSATVYTFRIESFSHEGRGIAHFGEFAEHPQTKHGKKVFVRYALPGEVVRA 60
+K+ A SR Y F++E+ SHEGRGIAH+G +HP KHGKKVF+RYALPGE V+A
Sbjct 1 MKQQAKSRKPQQPEYIFQVETLSHEGRGIAHYGSHPDHPADKHGKKVFIRYALPGETVKA 60
Query 61 KITHETKRFEEGELIEILDQPSIDRIVPVCPHFGVCGGCSMQHITPNQQIQIKQHVLASH 120
+ITHE KR EE E++E+L +PS +R+ VCPH+G+CGGCSMQHI P++QI +KQ+VL SH
Sbjct 61 QITHEAKRLEEAEMVELLAEPSANRVEAVCPHYGICGGCSMQHIHPDEQIHLKQNVLQSH 120
Query 121 LQHFAGLTVNEWLTPVRSLRADYRRRARVGVRYIPAKQKLIMGFREHGSNRLTPIQSCAV 180
LQHFAG+ +WL P+RSL++DYRRRAR+GVRY+P + +LI+GFREH SNRLT I +C+V
Sbjct 121 LQHFAGIQPEQWLEPIRSLQSDYRRRARIGVRYLPKQDRLILGFREHHSNRLTSIHTCSV 180
Query 181 LDQRLSQALPELYDVLNRLVAKAEIGHIELAMGDDEVSLLVRHLNTLPDSDITQLCDYAQ 240
LD++LS LPEL ++L L KA IGH+ELA GD E+SLLVRH+ L ++D+ QL +A
Sbjct 181 LDKKLSDNLPELRNLLQSLKGKAHIGHVELAKGDHEISLLVRHIEKLNNADVNQLRQFAL 240
Query 241 HKNWQLYLQAKGSDSLKRVDRSGAEMRLHYAVPAFNLNFAFSPLDFTQVNATVNQQMLKL 300
HK WQLYLQ K SL+R+D MRLHYA+ AF++NFAFSPLDFTQVNATVN+QM++L
Sbjct 241 HKGWQLYLQPK-DQSLRRIDEEQGAMRLHYALNAFDVNFAFSPLDFTQVNATVNEQMVQL 299
Query 301 ACDLLKLQKGEHVLDLFCGLGNFSLPLARCVGDTGRVVGVEGSEEMVQRAFENAAQNALH 360
AC+LL+LQ+GE VLDLFCGLGNFSLPLARCVG G+VVGVE SEEMVQRA +NA +N L
Sbjct 300 ACELLQLQQGERVLDLFCGLGNFSLPLARCVGAKGQVVGVEASEEMVQRATDNAKRNNLV 359
Query 361 NVEFYSQDLTKDFSHHSWANQGFDALLIDPPRSGAFEIMHYIANFEAKRIVYVSCNPATL 420
F+SQDLTKDFSHHSWANQGFDALLIDPPR+GA+EIM Y+ NF AKRIVYVSCNPATL
Sbjct 360 QASFFSQDLTKDFSHHSWANQGFDALLIDPPRAGAYEIMQYVPNFGAKRIVYVSCNPATL 419
Query 421 ARDAGVLAQHGYQLKKVGVMDMFTHTEHVESIALFEKIQEIND 463
ARDAGVL QHGYQLKK VMDMFTHTEHVESIALFEKIQEIND
Sbjct 420 ARDAGVLVQHGYQLKKAAVMDMFTHTEHVESIALFEKIQEIND 462
>B0VKL3 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Acinetobacter
baumannii (strain SDF)]
Length=463
Score = 672 bits (1735), Expect = 0.0
Identities = 316/463 (68%), Positives = 382/463 (83%), Gaps = 0/463 (0%)
Query 1 LKKHASSRSKSATVYTFRIESFSHEGRGIAHFGEFAEHPQTKHGKKVFVRYALPGEVVRA 60
+K+ A SR Y F++E+ SHEGRGIAH+G +HP KHGKKVF+RYALPGE V+A
Sbjct 1 MKQQAKSRKPQQPEYIFQVETLSHEGRGIAHYGSHPDHPADKHGKKVFIRYALPGETVKA 60
Query 61 KITHETKRFEEGELIEILDQPSIDRIVPVCPHFGVCGGCSMQHITPNQQIQIKQHVLASH 120
+ITHE KR EE E++ +L +PS +R+ VCPH+G+CGGCSMQHI P++QI++KQ+VL SH
Sbjct 61 QITHEAKRLEEAEMVALLAEPSANRVEAVCPHYGICGGCSMQHIHPDEQIRLKQNVLQSH 120
Query 121 LQHFAGLTVNEWLTPVRSLRADYRRRARVGVRYIPAKQKLIMGFREHGSNRLTPIQSCAV 180
LQHFAG+ +WL P+RSL++DYRRRAR+GVRY+P + +LI+GFREH SNRLT I +C+V
Sbjct 121 LQHFAGIQPEQWLEPIRSLQSDYRRRARIGVRYLPKQDRLILGFREHHSNRLTSIHTCSV 180
Query 181 LDQRLSQALPELYDVLNRLVAKAEIGHIELAMGDDEVSLLVRHLNTLPDSDITQLCDYAQ 240
LD++LS +LPEL ++L L K IGH+ELA GD E SLLVRH+ L ++D+ QL +A
Sbjct 181 LDKKLSDSLPELRNLLQSLKGKVHIGHVELAKGDHETSLLVRHIEKLNNADVNQLRQFAL 240
Query 241 HKNWQLYLQAKGSDSLKRVDRSGAEMRLHYAVPAFNLNFAFSPLDFTQVNATVNQQMLKL 300
HK WQLYLQ KG +SL+R+D MRLHYA+ AF++NFAFSPLDFTQVNATVN+QM++L
Sbjct 241 HKGWQLYLQPKGPESLRRIDEEQGAMRLHYALNAFDVNFAFSPLDFTQVNATVNEQMVQL 300
Query 301 ACDLLKLQKGEHVLDLFCGLGNFSLPLARCVGDTGRVVGVEGSEEMVQRAFENAAQNALH 360
AC+LL+LQ+GE VLDLFCGLGNFSLPLARCVG G +VGVE SEEMVQRA +N +N L
Sbjct 301 ACELLQLQQGERVLDLFCGLGNFSLPLARCVGAKGVIVGVEASEEMVQRATDNVKRNNLV 360
Query 361 NVEFYSQDLTKDFSHHSWANQGFDALLIDPPRSGAFEIMHYIANFEAKRIVYVSCNPATL 420
F+SQDLTKDFSHHSWANQGFDALLIDPPR+GA+EI+ Y+ NF AKRIVYVSCNPATL
Sbjct 361 QASFFSQDLTKDFSHHSWANQGFDALLIDPPRAGAYEIIQYVPNFGAKRIVYVSCNPATL 420
Query 421 ARDAGVLAQHGYQLKKVGVMDMFTHTEHVESIALFEKIQEIND 463
ARDAGVL QHGYQLKK VMDMFTHTEHVESIALFEKIQEIND
Sbjct 421 ARDAGVLVQHGYQLKKAAVMDMFTHTEHVESIALFEKIQEIND 463
>Q1QDU2 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Psychrobacter
cryohalolentis (strain ATCC BAA-1226 / DSM 17306
/ VKM B-2378 / K5)]
Length=513
Score = 484 bits (1247), Expect = 6e-172
Identities = 253/470 (54%), Positives = 315/470 (67%), Gaps = 19/470 (4%)
Query 8 RSKSATVYTFRIESFSHEGRGIA----HFGEFAEHPQTKHGKKVFVRYALPGEVVRAKIT 63
R K A F I+ SH+GRG+A FGE H KHGKK+FV +ALPGE KIT
Sbjct 42 RLKDAEPLPFTIDGLSHDGRGVAVYGNGFGETDGHITDKHGKKIFVSFALPGESALVKIT 101
Query 64 HETKRFEEGELIEILDQPSIDRIVPVCPHFGVCGGCSMQHITPNQQIQIKQHVLASHLQH 123
+ FEEG+ + I P+ +R+VP CPHFGVCGGC++QH P+ QI KQ VLA L H
Sbjct 102 NSRTSFEEGDAVRITANPNPERVVPPCPHFGVCGGCNLQHWQPDAQITFKQSVLAEMLVH 161
Query 124 FAGLTVNEWLTPVRSLRADYRRRARVGVRYIPAKQKLIMGFREHGSNRLTPIQSCAVLDQ 183
A + + WL PV R YR +AR+GVRY+ K+ ++GFRE SN L + C +LD
Sbjct 162 QANVAPDHWLEPVVGDRLGYRTKARLGVRYVVKKETALVGFRERSSNFLAELNECHILDP 221
Query 184 RLSQALPELYDVLNRLVAKAEIGHIELAMG---------DDEVSLLVRHLNTLPDSDITQ 234
R+ + L +++ L ++ +I +ELAMG D V+L+VR+L L D DI +
Sbjct 222 RIGFEIENLKTLISTLDSRDKIAQLELAMGEHLPELPDGDQPVALIVRNLEPLSDGDIDK 281
Query 235 LCDYAQHKNWQLYLQAKGSDSLKRV------DRSGAEMRLHYAVPAFNLNFAFSPLDFTQ 288
L + +NWQLYLQ+KG+DS++R+ D S RL+Y +P ++L F F P DFTQ
Sbjct 282 LKVFFAARNWQLYLQSKGADSIQRIALRDTDDLSEQFGRLYYQLPEYDLTFEFIPTDFTQ 341
Query 289 VNATVNQQMLKLACDLLKLQKGEHVLDLFCGLGNFSLPLARCVGDTGRVVGVEGSEEMVQ 348
VN +VN+QM KLACDLL L+ GE VLDLF GLGNFSLPLAR VG+TG VVGVEGSE M
Sbjct 342 VNLSVNRQMTKLACDLLDLKAGERVLDLFSGLGNFSLPLARLVGETGSVVGVEGSEAMTA 401
Query 349 RAFENAAQNALHNVEFYSQDLTKDFSHHSWANQGFDALLIDPPRSGAFEIMHYIANFEAK 408
RA +NA +N ++N EFYSQDLT D + WANQGFDALLIDPPRSGA+EIM Y+ F A+
Sbjct 402 RAADNARRNGINNTEFYSQDLTHDCTDKPWANQGFDALLIDPPRSGAWEIMQYLPKFNAE 461
Query 409 RIVYVSCNPATLARDAGVLAQHGYQLKKVGVMDMFTHTEHVESIALFEKI 458
RIVYVSCNPATLARD L + GY+L GVMDMF HT HVESIA FEKI
Sbjct 462 RIVYVSCNPATLARDTKALLEQGYRLTHAGVMDMFCHTGHVESIARFEKI 511
>Q4FUU5 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Psychrobacter
arcticus (strain DSM 17307 / VKM B-2377 / 273-4)]
Length=512
Score = 483 bits (1243), Expect = 2e-171
Identities = 251/470 (53%), Positives = 316/470 (67%), Gaps = 19/470 (4%)
Query 8 RSKSATVYTFRIESFSHEGRGIAHFGE-FAE---HPQTKHGKKVFVRYALPGEVVRAKIT 63
R K A F I+ SH+GRG+A +G F E H KHGKK+FV +ALPGE KIT
Sbjct 41 RLKDAEPLPFAIDGLSHDGRGVAVYGNGFVEADGHITDKHGKKIFVSFALPGESALVKIT 100
Query 64 HETKRFEEGELIEILDQPSIDRIVPVCPHFGVCGGCSMQHITPNQQIQIKQHVLASHLQH 123
+ FEEG+ + I P+ +R+VP CPHFGVCGGC++QH P QI KQ VLA L H
Sbjct 101 NSRTSFEEGDAVNITANPNPERVVPPCPHFGVCGGCNLQHWQPEAQINFKQSVLAEMLVH 160
Query 124 FAGLTVNEWLTPVRSLRADYRRRARVGVRYIPAKQKLIMGFREHGSNRLTPIQSCAVLDQ 183
A + + WL PV R YR +AR+GVRY+ K+ ++GFRE SN L + C +LD
Sbjct 161 QANVAPDHWLEPVVGDRLGYRTKARLGVRYVAKKETALVGFRERSSNFLAELNECHILDP 220
Query 184 RLSQALPELYDVLNRLVAKAEIGHIELAMG---------DDEVSLLVRHLNTLPDSDITQ 234
R+ + L +++ L ++ +I +ELAMG D V+L+VR+L L D+DI +
Sbjct 221 RIGFEIENLKTLISTLESRNKIAQLELAMGEYLPELPDGDQPVALIVRNLEPLSDADIDK 280
Query 235 LCDYAQHKNWQLYLQAKGSDSLKRVDRSGAEM------RLHYAVPAFNLNFAFSPLDFTQ 288
L + +NWQLYLQ KG+DS++R+ + A+ RL+Y +P ++L F F P DFTQ
Sbjct 281 LKVFFAARNWQLYLQPKGADSIQRIALTAADDLSEQFGRLYYQLPEYDLTFEFIPTDFTQ 340
Query 289 VNATVNQQMLKLACDLLKLQKGEHVLDLFCGLGNFSLPLARCVGDTGRVVGVEGSEEMVQ 348
VN +VN+QM KLACDLL L+ GE VLDLF GLGNFSLPLAR VG+TG VVGVEGSE M
Sbjct 341 VNLSVNRQMTKLACDLLDLKAGERVLDLFSGLGNFSLPLARLVGETGSVVGVEGSEAMTI 400
Query 349 RAFENAAQNALHNVEFYSQDLTKDFSHHSWANQGFDALLIDPPRSGAFEIMHYIANFEAK 408
RA +NA +N ++N EFYSQDLT D + WANQGFDALLIDPPRSGA+EIM Y+ F A+
Sbjct 401 RAADNARRNGINNTEFYSQDLTHDCTDKPWANQGFDALLIDPPRSGAWEIMQYLPKFNAE 460
Query 409 RIVYVSCNPATLARDAGVLAQHGYQLKKVGVMDMFTHTEHVESIALFEKI 458
RIVYVSCNPATLARD L + GY+L GVMDMF HT HVESIA FEK+
Sbjct 461 RIVYVSCNPATLARDTKALLEQGYRLTHAGVMDMFCHTGHVESIARFEKV 510
>Q0VP26 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Alcanivorax
borkumensis (strain ATCC 700651 / DSM 11573 / NCIMB
13689 / SK2)]
Length=445
Score = 399 bits (1025), Expect = 2e-139
Identities = 203/442 (46%), Positives = 288/442 (65%), Gaps = 14/442 (3%)
Query 19 IESFSHEGRGIAHFGEFAEHPQTKHGKKVFVRYALPGEVVRAKITHETKRFEEGELIEIL 78
IE+ SH+GRGIA + GK F+ ALPGE V K T+ ++F+EG+ +EI+
Sbjct 17 IETLSHDGRGIAR----------RDGKTTFIDNALPGEEVMFKFTYMRRKFDEGKAVEIV 66
Query 79 DQPSIDRIVPVCPHFGVCGGCSMQHITPNQQIQIKQHVLASHLQHFAGLTVNEWLTPVRS 138
S DR+ P C H +CGGCS+QH++P Q+ KQ VL L HF GL EWL P+
Sbjct 67 TA-SPDRVTPPCEHSTLCGGCSLQHMSPEVQVSRKQAVLREQLAHFGGLEPEEWLAPLTG 125
Query 139 LRADYRRRARVGVRYIPAKQKLIMGFREHGSNRLTPIQSCAVLDQRLSQALPELYDVLNR 198
YR +AR+GV+Y+ AK + ++GFRE ++ + + +C VL + + EL +++
Sbjct 126 PVTGYRSKARMGVKYVEAKGETLVGFREKRNSFIAQLHTCEVLIPDVGHRIDELRTLMHG 185
Query 199 LVAKAEIGHIELAMGDDEVSLLVRHLNTLPDSDITQLCDYAQHKNWQLYLQAKGSDSLKR 258
L +++ I IELA GDD+V+L++RHL+ L ++D L + Q+ W YLQ ++ R
Sbjct 186 LESRSRIPQIELAAGDDDVALIIRHLDPLSEADQQALLGFCQNLGWHCYLQPGNESTVHR 245
Query 259 VDRSGAEMRLHYAVPAFNLNFAFSPLDFTQVNATVNQQMLKLACDLLKLQKGEHVLDLFC 318
+ E RL+Y P+ + AF P DFTQVNA +N++M+ LA DLL + VLDLFC
Sbjct 246 IWPQEGEQRLYYKHPSAGVELAFHPTDFTQVNAEINRKMVPLALDLLDISPDHTVLDLFC 305
Query 319 GLGNFSLPLARCVGDTGRVVGVEGSEEMVQRAFENAAQNALHNVEFYSQDLTKDFSHHSW 378
GLGNF++P A+ G+VVGVE S+ MV+R +ENA +N+L N+EF++ DL++D S +W
Sbjct 306 GLGNFTIPAAK---RAGKVVGVEVSQAMVERGYENARRNSLENLEFHAWDLSQDVSGQAW 362
Query 379 ANQGFDALLIDPPRSGAFEIMHYIANFEAKRIVYVSCNPATLARDAGVLAQHGYQLKKVG 438
A Q +D +LIDPPR+GA E++ + A +IVYVSCNPATLARDAG L GY+LK G
Sbjct 363 ARQTYDRILIDPPRTGALEMVKLMPRLGASKIVYVSCNPATLARDAGELMALGYRLKAAG 422
Query 439 VMDMFTHTEHVESIALFEKIQE 460
VMDMF HT HVESIA+FEK+++
Sbjct 423 VMDMFPHTTHVESIAVFEKMKK 444
>A1U2U9 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Marinobacter
nauticus (strain ATCC 700491 / DSM 11845 / VT8)]
Length=449
Score = 396 bits (1017), Expect = 4e-138
Identities = 213/443 (48%), Positives = 287/443 (65%), Gaps = 18/443 (4%)
Query 19 IESFSHEGRGIAHFGEFAEHPQTKHGKKVFVRYALPGEVVRAKITHETKRFEEGELIEIL 78
IE+ SH+GRGIA GK FV ALPGE V AK+ RF+E E+L
Sbjct 18 IETLSHDGRGIAR----------ADGKTQFVDGALPGETVMAKMVRTRSRFDELRTTEVL 67
Query 79 DQPSIDRIVPVCPHFGVCGGCSMQHITPNQQIQIKQHVLASHLQHFAGLTVNEWLTPVRS 138
+ DR P C +CGGCS+QH++ + QI+ K++ L H HF G+ +W+ P+RS
Sbjct 68 EAAP-DRQQPPCEFADLCGGCSLQHMSADAQIRFKENTLREHFAHFGGIEPEQWVAPMRS 126
Query 139 LRA-DYRRRARVGVRYIPAKQKLIMGFREHGSNRLTPIQSCAVLDQRLSQALPELYDVLN 197
+ YRR+AR+GVRY+ A++ +++GFRE ++ LT I C VLD R+ + + L ++L+
Sbjct 127 PDSLGYRRKARLGVRYVKARESVLVGFREKRNSFLTDIDRCVVLDPRIGERIEPLRELLH 186
Query 198 RLVAKAEIGHIELAMGDDEVSLLVRHLNTLPDSDITQLCDYAQHKNWQLYLQAKGSDSLK 257
+ A I +E+A GDD +++ R+++ L D +L + Q + +YLQ KG D++
Sbjct 187 GMAAFDRIAQVEVACGDDTAAMVFRNMDDLVPDDREKLIAFGQAHDLHIYLQPKGPDTVH 246
Query 258 RV-DRSGA--EMRLHYAVPAFNLNFAFSPLDFTQVNATVNQQMLKLACDLLKLQKGEHVL 314
R+ SG + RL Y + F+L AF P+DFTQVNA +N+ M+ A + L +Q GE VL
Sbjct 247 RIWPESGGRDDERLTYRMDEFDLTMAFHPMDFTQVNAGINRNMVHRAVEWLDVQPGERVL 306
Query 315 DLFCGLGNFSLPLARCVGDTGRVVGVEGSEEMVQRAFENAAQNALHNVEFYSQDLTKDFS 374
DLFCGLGNF+LPLAR G+VVGVEG + MV R ENA N L NVEF+ DL DF+
Sbjct 307 DLFCGLGNFTLPLAR---KGGQVVGVEGDDAMVVRGRENARLNDLSNVEFHGADLHGDFT 363
Query 375 HHSWANQGFDALLIDPPRSGAFEIMHYIANFEAKRIVYVSCNPATLARDAGVLAQHGYQL 434
SWA +GFD +LIDPPRSGA EI Y+ F A RIVYVSCNPATLARDAGV+ ++GY+L
Sbjct 364 GQSWAKEGFDKILIDPPRSGAEEICKYLTAFGANRIVYVSCNPATLARDAGVMVRNGYRL 423
Query 435 KKVGVMDMFTHTEHVESIALFEK 457
+ GVMDMF HT HVESIALFE+
Sbjct 424 VQAGVMDMFPHTTHVESIALFER 446
>Q0A8Y4 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Alkalilimnicola
ehrlichii (strain ATCC BAA-1101 / DSM 17681 /
MLHE-1)]
Length=445
Score = 374 bits (960), Expect = 2e-129
Identities = 199/444 (45%), Positives = 274/444 (62%), Gaps = 16/444 (4%)
Query 15 YTFRIESFSHEGRGIAHFGEFAEHPQTKHGKKVFVRYALPGEVVRAKITHETKRFEEGEL 74
+ I SHEGRGIAH E + +FV ALPGE VRA T + E +
Sbjct 13 FEIAITGLSHEGRGIAHHDE----------RTLFVHGALPGERVRAVYTKRRRSVAEARV 62
Query 75 IEILDQPSIDRIVPVCPHFGVCGGCSMQHITPNQQIQIKQHVLASHLQHFAGLTVNEWLT 134
+E++ P+ +RI P CPHFGVCGGCS+QH+TP +Q+++KQ VL H G+ L
Sbjct 63 VEVVS-PAPERIAPHCPHFGVCGGCSLQHLTPERQVELKQSVLMEQFHHMGGVQPERVLA 121
Query 135 PVRSLRADYRRRARVGVRYIPAKQKLIMGFREHGSNRLTPIQSCAVLDQRLSQALPELYD 194
P+ YRR+AR+ V+++P K +++GFRE S + + C VLD R+ + L EL
Sbjct 122 PLTGAPWGYRRKARLAVKHVPRKGGVLVGFREKHSPFVAEMDRCPVLDPRVGERLTELGR 181
Query 195 VLNRLVAKAEIGHIELAMGDDEVSLLVRHLNTLPDSDITQLCDYAQHKNWQLYLQAKGSD 254
++ L + IE+A+GD+ +L+ R+L L +D+ +L +A+ +Y Q G++
Sbjct 182 LIEGLSIPDRVPQIEVALGDETGALVFRNLAPLTAADLNRLAGFARDSGLAVY-QQPGNE 240
Query 255 SLKRVDRSGAEMRLHYAVPAFNLNFAFSPLDFTQVNATVNQQMLKLACDLLKLQKGEHVL 314
+ + RL YA+P + F P DFTQVNA +N+ M+ A DLL ++ G+ VL
Sbjct 241 ATMALVHDPVGRRLDYALPGHGVRLGFRPGDFTQVNAEINRAMVDQALDLLAVEPGQRVL 300
Query 315 DLFCGLGNFSLPLARCVGDTGRVVGVEGSEEMVQRAFENAAQNALHNVEFYSQDLTKDFS 374
DLFCGLGNF+LPLAR + VVGVEG+E +V+R ENA +N L NV FY DLT +
Sbjct 301 DLFCGLGNFTLPLARRASE---VVGVEGAEALVERGRENALRNGLDNVRFYGADLTLAAA 357
Query 375 HHSWANQGFDALLIDPPRSGAFEIMHYIANFEAKRIVYVSCNPATLARDAGVLA-QHGYQ 433
WA GFD +L+DPPRSGAFE++ +A KRIVYVSC PATLARDAG L +HGY+
Sbjct 358 DQPWATGGFDRVLLDPPRSGAFEVLGLVAALGPKRIVYVSCGPATLARDAGELVHRHGYR 417
Query 434 LKKVGVMDMFTHTEHVESIALFEK 457
L GVMDMF HT HVES+A+F++
Sbjct 418 LTAAGVMDMFPHTAHVESMAVFQR 441
>P55135 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Escherichia
coli (strain K12)]
Length=433
Score = 290 bits (743), Expect = 4e-97
Identities = 170/455 (37%), Positives = 252/455 (55%), Gaps = 28/455 (6%)
Query 5 ASSRSKSATVYTFRIESFSHEGRGIAHFGEFAEHPQTKHGKKVFVRYALPGEVVRAKITH 64
A R+ + + T + G+G+A +GK +F+ LP E +T
Sbjct 7 AKRRTTTRQIITVSVNDLDSFGQGVARH----------NGKTLFIPGLLPQENAEVTVTE 56
Query 65 ETKRFEEGELIEILDQPSIDRIVPVCPHFGVCGGCSMQHITPNQQIQIKQHVLASHLQHF 124
+ K++ +++ L S +R P CPHFGVCGGC QH + + Q + K LA ++H
Sbjct 57 DKKQYARAKVVRRLSD-SPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH- 114
Query 125 AGLTVNEWLTPVRSLRADYRRRARVGVRYIPAKQKLIMGFREHGSNRLTPIQSCAVLDQR 184
V+E + V YRRRAR+ + Y+P Q+L MGFR+ GS+ + ++ C +L +
Sbjct 115 ---DVSEVIADVPW---GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQ 168
Query 185 LSQALPELYDVLNRLVAKAEIGHIELAMGDDEVSLLVRHLNTLPDSDITQLCDYAQHKNW 244
L LP++ L L A +GH+EL +++RH L +D +L ++ +
Sbjct 169 LEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGL 228
Query 245 QLYLQAKGSDSLKRVDRSGAEMRLHYAVPAFNLNFAFSPLDFTQVNATVNQQMLKLACDL 304
LYL A S+ L+ V EM + + L FSP DF QVNA VNQ+M+ A +
Sbjct 229 DLYL-APDSEILETVS---GEMPWY---DSNGLRLTFSPRDFIQVNAGVNQKMVARALEW 281
Query 305 LKLQKGEHVLDLFCGLGNFSLPLARCVGDTGRVVGVEGSEEMVQRAFENAAQNALHNVEF 364
L +Q + VLDLFCG+GNF+LPLA VVGVEG +V++ +NA N L NV F
Sbjct 282 LDVQPEDRVLDLFCGMGNFTLPLAT---QAASVVGVEGVPALVEKGQQNARLNGLQNVTF 338
Query 365 YSQDLTKDFSHHSWANQGFDALLIDPPRSGAFEIMHYIANFEAKRIVYVSCNPATLARDA 424
Y ++L +D + WA GFD +L+DP R+GA +M I E RIVYVSCNPATLARD+
Sbjct 339 YHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDS 398
Query 425 GVLAQHGYQLKKVGVMDMFTHTEHVESIALFEKIQ 459
L + GY + ++ ++DMF HT H+ES+ LF +++
Sbjct 399 EALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433
>E1SSZ4 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Ferrimonas
balearica (strain DSM 9799 / CCM 4581 / KCTC 23876
/ PAT)]
Length=447
Score = 283 bits (724), Expect = 4e-94
Identities = 173/438 (39%), Positives = 241/438 (55%), Gaps = 25/438 (6%)
Query 21 SFSHEGRGIAHFGEFAEHPQTKHGKKVFVRYALPGEVVRAKITHETKRFEEGELIE-ILD 79
+ H+G+ +A EH GK VFV LPGE + ++ RF ++++ D
Sbjct 25 ALDHQGQAVA------EH----QGKVVFVPGLLPGESAQVQLVENKARFARAKVLKRTSD 74
Query 80 QPSIDRIVPVCPHFGVCGGCSMQHITPNQQIQIKQHVLASHLQHFAGLTVNEWLTPVRSL 139
P RI P CPHF CGGC +Q Q +KQ LA + +GLT +W P+
Sbjct 75 HPQ--RIAPPCPHFARCGGCQLQFAPTGLQRDLKQQALAQVVSKLSGLTPEQWAEPLLGP 132
Query 140 RADYRRRARVGVRYIPAKQKLIMGFREHGSNRLTPIQSCAVLDQRLSQALPELYDVLNRL 199
YRRRAR+G RY + L++GFR+ GSNRLT I C VL + LS+ + L +L L
Sbjct 133 DWHYRRRARLGCRYDAGE--LVLGFRQEGSNRLTAIDHCPVLAEPLSELITPLQQLLAPL 190
Query 200 VAKAEIGHIELAMGDDEVSLLVRHLNTLPDSDITQLCDYAQHKNWQLYLQAKGSDSLKRV 259
+GH++L + + ++VR L L + + L + Q + Q+ +Q D+L
Sbjct 191 KLARHVGHLDLMLASEGPVVVVRLLRPLREEEREALAAFGQSRGVQMLIQG---DAL--T 245
Query 260 DRSG-AEMRLHYAVPAFNLNFAFSPLDFTQVNATVNQQMLKLACDLLKLQKGEHVLDLFC 318
D SG A LHY + AF P DF QVN VNQ M+ A + L+ Q GE LDLFC
Sbjct 246 DLSGQAVAPLHYDIGEGRPQPAFLPGDFFQVNGVVNQAMISQAIEWLQPQPGEKGLDLFC 305
Query 319 GLGNFSLPLARCVGDTGRVVGVEGSEEMVQRAFENAAQNALHNVEFYSQDLTKDFSHHSW 378
G GNF+L LA G + ++GVEG MV+RA AA+ L + F DL + W
Sbjct 306 GGGNFTLALA---GQSAEIIGVEGVPAMVERARARAAELGLEQLRFEYADLNGEAPKAQW 362
Query 379 ANQGFDALLIDPPRSGAFEIMHYIANFEAKRIVYVSCNPATLARDAGVLAQHGYQLKKVG 438
D +L+DP R+GA +M ++A RI+YV+CNPA+L RD VLAQ GY+L ++G
Sbjct 363 LKD-VDWVLLDPARAGAPGVMEWLAKLRPSRILYVACNPASLGRDGKVLAQQGYRLSRLG 421
Query 439 VMDMFTHTEHVESIALFE 456
++DMF HT H+ES+ALFE
Sbjct 422 LVDMFPHTHHLESMALFE 439
>P55136 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Photobacterium
angustum (strain S14 / CCUG 15956)]
Length=220
Score = 188 bits (477), Expect = 3e-60
Identities = 96/182 (53%), Positives = 124/182 (68%), Gaps = 3/182 (2%)
Query 276 NLNFAFSPLDFTQVNATVNQQMLKLACDLLKLQKGEHVLDLFCGLGNFSLPLARCVGDTG 335
++ FSP DF QVN VN +M++ A + L +Q + VLDLFCGLGNFSLPLAR
Sbjct 31 DVRLTFSPKDFIQVNRDVNVKMVEQAINWLDIQPQDRVLDLFCGLGNFSLPLAR---RAK 87
Query 336 RVVGVEGSEEMVQRAFENAAQNALHNVEFYSQDLTKDFSHHSWANQGFDALLIDPPRSGA 395
VVGVEG +EMV RA NAA N L N FY +L +D + WA + FD +L+DP R+GA
Sbjct 88 AVVGVEGVDEMVARATANAAANGLDNATFYQANLDEDVTKLVWAQEQFDKILLDPARAGA 147
Query 396 FEIMHYIANFEAKRIVYVSCNPATLARDAGVLAQHGYQLKKVGVMDMFTHTEHVESIALF 455
+M +I N ++VYVSCNPATLARD+ +L Q GY+L ++G+MDMF HT H+ES+ LF
Sbjct 148 AGVMQHIVNLAPSKVVYVSCNPATLARDSQMLLQQGYKLARLGMMDMFPHTGHLESMTLF 207
Query 456 EK 457
K
Sbjct 208 VK 209
>O31503 23S rRNA (uracil-C(5))-methyltransferase RlmCD [Bacillus
subtilis (strain 168)]
Length=459
Score = 159 bits (403), Expect = 6e-47
Identities = 133/467 (28%), Positives = 205/467 (44%), Gaps = 48/467 (10%)
Query 15 YTFRIESFSHEGRGIAHFGEFAEHPQTKHGKKVFVRYALPGEVVRAKITHETKRFEEGEL 74
Y E +HEG G+A G +FV ALP E + K+T K F G L
Sbjct 13 YDVTFEDLTHEGAGVAKV----------QGFPIFVPNALPEEKAQIKVTRVKKGFAFGRL 62
Query 75 IEILDQPSIDRIVPVCPHFGVCGGCSMQHITPNQQIQIKQHVLASHLQHFAGLTVNE-WL 133
IE+ ++ S R CP + CGGC +QH+T Q+ KQ + L+ L +++ +
Sbjct 63 IELKEE-SPHRTDAPCPIYKQCGGCQLQHMTYEGQLLFKQKQVKDVLERIGKLDLSKVTV 121
Query 134 TPVRSLRADYRRRARVGVRYIPAKQKLIMGFREHGSNRLTPIQSCAVLDQRLSQALPELY 193
P + + R + V + L+ GF + S+ + + +C + + +A+ +
Sbjct 122 HPTLGMEDPWNYRNKAQVPVGEREGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAVK 181
Query 194 DVLNRLVAKAE--------IGHIELAMGDDEVSLLVRHLNTLPD--------SDITQLCD 237
D+ KA + HI + G +++ + D DIT
Sbjct 182 DICANYGVKAYNEERHKGWLRHIMVRYGVVTGEMMIVFITRTSDFPHKAKIIEDIT---- 237
Query 238 YAQHKNWQLYLQAKGSDSLKRVDRSGAEMRLHYAVPAF-----NLNFAFSPLDFTQVNAT 292
AQ + + +Q + + G E + + ++ FA S F QVN
Sbjct 238 -AQFPHVKSIVQNINPNKTNVI--FGNETNVIWGEEYIYDLIGDVKFAISARSFYQVNPE 294
Query 293 VNQQMLKLACDLLKLQKGEHVLDLFCGLGNFSLPLARCVGDTGRVVGVEGSEEMVQRAFE 352
+ + A + +LQ E V+D +CG+G SL LA+ +V GVE E ++ A
Sbjct 295 QTKVLYDKALEYAELQGEETVIDAYCGIGTISLFLAK---QAKKVYGVEIVPEAIEDAKR 351
Query 353 NAAQNALHNVEFYSQDLTKDFSHHSWANQGF--DALLIDPPRSGAFE-IMHYIANFEAKR 409
NA N N EF + W +G D L++DPPR G E ++ I + KR
Sbjct 352 NAELNGNTNAEFAVGEAETVIP--KWYEEGITADTLVVDPPRKGCDEALLRTIVEMKPKR 409
Query 410 IVYVSCNPATLARDAGVLAQHGYQLKKVGVMDMFTHTEHVESIALFE 456
+VYVSCNP TLARD VL GY ++V +DMF HT HVE L +
Sbjct 410 VVYVSCNPGTLARDLRVLEDGGYVTREVQPVDMFPHTNHVECCVLIK 456
>D0JIM5 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC [Yersinia
pestis (strain D106004)]
Length=376
Score = 108 bits (270), Expect = 4e-29
Identities = 106/381 (28%), Positives = 169/381 (44%), Gaps = 38/381 (10%)
Query 94 GVCGGCSMQHITPNQQIQIKQHVLASHLQHFAGLTVNEWLTPVRSLRADYRRRARVGVRY 153
G C C QQ+ KQH L S L AG V +WL PV + +R +A++ V
Sbjct 9 GRCRSCQWLDKPYPQQLADKQHHLESLL---AGHAVTQWLAPVFGRESAFRNKAKMVVSG 65
Query 154 IPAKQKLIMGFREHGSNRLTPIQSCAVLDQRLSQALPELYDVLNRLVAKAEIGHIELAMG 213
+ L M R+ TP+ CA + ++ VL +A+A + +A
Sbjct 66 SVERPLLGMLHRDG-----TPVDLCAC--PLYPPSFEPVFTVLKTFIARAGLTPYNVARK 118
Query 214 DDEVSLLVRHLNTL-----------PDSDITQLCDYAQHKNWQLYLQAKGSDSLKRVDRS 262
E+ L+ +T ++ + QL QL A S +++ V +
Sbjct 119 RGELKFLLLTESTYNGELMLRFVLRSETKLAQLIAALPWLQQQLPQLAVISANIQPVHMA 178
Query 263 GAE------MRLHYAVPA-FN-LNFAFSPLDFTQVNATVNQQMLKLACDLLKLQKGEHVL 314
E + A+P FN + P F Q N V + A ++ + +
Sbjct 179 ILEGEREIPLTEQQALPERFNQVPLYIRPQSFFQTNPQVAASLYATARQWVQEHEVHSMW 238
Query 315 DLFCGLGNFSLPLARCVGDTGRVVGVEGSEEMVQRAFENAAQNALHNVEFYSQDLTKDFS 374
DLFCG+G F L C G ++ G+E + E + A ++A Q L NV F + D T+ +
Sbjct 239 DLFCGVGGFGL---HCAGPETQLTGIEINAEAIACARQSAEQLGLKNVSFAALDSTRFAT 295
Query 375 HHSWANQGFDALLIDPPRSG-AFEIMHYIANFEAKRIVYVSCNPATLARDAGVLAQHGYQ 433
+ Q + +L++PPR G E+ Y++ K I+Y SCN T+A+D +LA GY
Sbjct 296 AEA---QIPELVLVNPPRRGIGRELCDYLSQMAPKFILYSSCNAETMAKDISLLA--GYH 350
Query 434 LKKVGVMDMFTHTEHVESIAL 454
+++V + DMF HT H E + L
Sbjct 351 IERVQLFDMFPHTSHYEVLTL 371
>Q9UZR7 tRNA (uracil(54)-C(5))-methyltransferase [Pyrococcus abyssi
(strain GE5 / Orsay)]
Length=405
Score = 108 bits (269), Expect = 8e-29
Identities = 113/424 (27%), Positives = 193/424 (46%), Gaps = 53/424 (13%)
Query 45 KKVFVRYALPG-EVVRAKITHETKRFEEGELIEILDQPSIDRIVPVCPHFGVCGGCSMQH 103
K + V ++ PG E++ ++ KR + + P R+ P C FG CGGC++QH
Sbjct 17 KGILVPFSAPGDEIIVERVERVKKRRVASQWKLVRSSPL--RVGPRCKAFGKCGGCTLQH 74
Query 104 ITPNQQIQIKQHVLASHLQHFAGLTVNEWLTPVRSLRADYRRRARVGVRYIPAKQKLIMG 163
+ + Q++ K+ L+ G V +P + R R+ + A K +G
Sbjct 75 LNYDYQLEFKR----KKLKRILGFEVEVVPSP-----KIFGHRNRIDL----AITKDGIG 121
Query 164 FREHGSN-RLTPIQSCAVLDQRLSQALPELYDVLNRL------VAKAE--IGHIELAMGD 214
FRE G ++ I C V + +A+ L + + + K E + ++ L G
Sbjct 122 FRERGKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKISVWNIKKDEGFLRYMVLREGK 181
Query 215 DEVSLLVRHLN---TLPDSDITQLCDYAQHKNWQLYLQAKGSDSLKRVDRSGAEMRLHYA 271
++V + LPD T D+ W + ++K S ++R + +
Sbjct 182 FTEEVMVNFVTKEGNLPDP--TNYFDF-DSIYWSVN-RSKSDVSYGDIERFWGKEFIRER 237
Query 272 VPAFNLNFAFSPLDFTQVNATVNQQMLKLACDLLKLQKGEHVLDLFCGLGNFSLPLARCV 331
+ ++++ P F Q N+ Q + L + +L +GE +LD++ G+G F + LA+
Sbjct 238 LD--DVDYLIHPNSFFQTNS---YQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAK-- 290
Query 332 GDTGRVVGVEGSEEMVQRAFENAAQNALHNVEFYSQDLTKDF-SHHSWANQGFDALLIDP 390
R V+G + E A + A NVE + D + S + +GFD +++DP
Sbjct 291 ----RGFNVKGFDSN-----EFAIEMARRNVEINNVDAEFEVASDREVSVKGFDTVIVDP 341
Query 391 PRSGAFEIMHYIANFEAKR-IVYVSCNPATLARDAGVLAQHGYQLKKVGVMDMFTHTEHV 449
PR+G + N E IVYVSCNP T ARD +L Y++ ++ +DMF HT HV
Sbjct 342 PRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKML---DYRIDEIVALDMFPHTPHV 398
Query 450 ESIA 453
E +A
Sbjct 399 ELVA 402
>Q9UZK1 23S rRNA (uracil(747)-C(5))-methyltransferase [Pyrococcus
abyssi (strain GE5 / Orsay)]
Length=410
Score = 100 bits (249), Expect = 4e-26
Identities = 103/429 (24%), Positives = 179/429 (42%), Gaps = 64/429 (15%)
Query 46 KVFVRYALPGEVVRAKITHETKRFEEGELIEILDQPSIDRIVPVCPHFGVCGGCSMQHIT 105
+V V +A PG+VV T E +++ I R+ C +FG CGGC Q +
Sbjct 18 EVLVPFAYPGDVVEVISTRERFGRTIARDFKLVKSSPI-RVPGKCRYFGRCGGCLWQGLK 76
Query 106 PNQQIQIKQHVLASHLQHFAGLTVNEWLTPVRSLRADYRRRARVGV-----RYIPAKQKL 160
+Q+++K+ + V + A+ + R+ +I +
Sbjct 77 YREQLKLKEEIFKR----------------VTGVEAEIKGSPRIWFFRNISNFIVTVNGI 120
Query 161 IMGFREHGSNR-LTPIQSCAVLDQRLSQALPELYDVLNRLVAK------AEIGHIELAMG 213
GF+E G R + + C V +R + + L ++ ++++ G
Sbjct 121 --GFKEFGMPRTVVSVDECPVFSERTKLYIRAMKRFLRETGLNPWNWKNGDVHYLQVREG 178
Query 214 DDEVSLLVRHLNTLPDS---DITQLCDYAQHKNWQLYLQAKGSDSLKRVDRSGAEMRLH- 269
+++ + +P S ++T+ +A W L KR D G +
Sbjct 179 KFTGEVMINVIAHIPPSGREELTEAFGFADSVYWSLKRD-------KRDDPKGIPTLIKG 231
Query 270 ---YAVPAFNLNFAFSPLDFTQVNATVNQQMLKLACDLLKLQKGEHVLDLFCGLGNFSLP 326
L + P F Q N+ +LK + +G VLDL+ G+G FSL
Sbjct 232 NEFIRESIEGLVYLIHPSTFFQTNSYALPILLKA---VESFAEGSKVLDLYSGVGTFSLY 288
Query 327 LARCVGDTGRVVGVEGSEEMVQRAFENAAQNALHNVEFY---SQDLTKDFSHHSWANQGF 383
LA+ V GVE +EE V+ A ++A N+L +V F ++D +G+
Sbjct 289 LAK---KGFEVTGVEVNEESVRVAKKSAEVNSL-DVSFIPGRAEDAKL---------KGY 335
Query 384 DALLIDPPRSGAFEIMHYIANFEAKRIVYVSCNPATLARDAGVLAQHGYQLKKVGVMDMF 443
+ L++DPPR G + IA + ++YVSCNP+ D Y+++ ++DMF
Sbjct 336 ETLIVDPPRKGLKDFSKRIAKEGPENLIYVSCNPSKFVLDYRNYLSKAYKIEDAVLIDMF 395
Query 444 THTEHVESI 452
HT HVE++
Sbjct 396 PHTPHVEAV 404
>P33753 tRNA (uracil(54)-C(5))-methyltransferase [Saccharomyces
cerevisiae (strain ATCC 204508 / S288c)]
Length=639
Score = 95.9 bits (237), Expect = 4e-24
Identities = 108/489 (22%), Positives = 213/489 (44%), Gaps = 62/489 (13%)
Query 14 VYTFRIESFSHEGRGIAHFGEFAEHP-QTKHGKKVFVRYALPGEVVRAKITHETKRFEEG 72
V ++ + G G+A ++P +T+ + V + + LPG+VV K+ + E
Sbjct 169 VKNVKVLEITSNGNGLA----LIDNPVETEKKQVVIIPFGLPGDVVNIKVFKTHPYYVES 224
Query 73 ELIEILDQPSIDRIVPVCP-HFGVCGGCSMQHITPNQQIQIKQHVLASHLQHFAGLTVNE 131
+L++++++ + R + +FG G ++ +T + Q+++K+ + + + FA V E
Sbjct 225 DLLDVVEKSPMRRDDLIRDKYFGKSSGSQLEFLTYDDQLELKRKTIMNAYKFFAPRLVAE 284
Query 132 WLTP------VRSLRADYRRRARVGVRYIPAKQKLI-----MGFREHGSNR--------- 171
L P L+ YR + KQK + +GF + G +
Sbjct 285 KLLPPFDTTVASPLQFGYRTKITPHFDMPKRKQKELSVRPPLGFGQKGRPQWRKDTLDIG 344
Query 172 ----LTPIQSCAVLDQRLSQALPELYDVLNRLVAKAEIGHIELAMGDDEVSLLVRHLNTL 227
+ I C + + L++ L R + E + + ++L+R T+
Sbjct 345 GHGSILDIDECVLATEVLNKGLTN-----ERRKFEQEFKNYKKG-----ATILLRENTTI 394
Query 228 PDSD---ITQLCDYAQH-KNWQL-YLQAKGSDSLKRVDRSGAEMRLHYAVPAFN-LNFAF 281
D + QL + A +N + Y++ + + R+ ++ + F F
Sbjct 395 LDPSKPTLEQLTEEASRDENGDISYVEVEDKKNNVRLAKTCVTNPRQIVTEYVDGYTFNF 454
Query 282 SPLDFTQVNATVNQQMLKLACDLLKL------QKGEHVLDLFCGLGNFSLPLARCVGDTG 335
S +F Q N ++ + K D L+ K + ++D +CG G FS+ ++ V
Sbjct 455 SAGEFFQNNNSILPIVTKYVRDNLQAPAKGDDNKTKFLVDAYCGSGLFSICSSKGVD--- 511
Query 336 RVVGVEGSEEMVQRAFENAAQNALHNVEFYSQDLTKDFSHHSWANQGFDALLIDPPRSGA 395
+V+GVE S + V A +NA N + N F K F ++ ++++DPPR G
Sbjct 512 KVIGVEISADSVSFAEKNAKANGVENCRFIVGKAEKLFESIDTPSEN-TSVILDPPRKGC 570
Query 396 FEI-MHYIANFEAKRIVYVSCNPATLARDAGVLAQH-----GYQLKKVGVMDMFTHTEHV 449
E+ + +A + +I+Y+SCN + ARD + +Q++ + D F T HV
Sbjct 571 DELFLKQLAAYNPAKIIYISCNVHSQARDVEYFLKETENGSAHQIESIRGFDFFPQTHHV 630
Query 450 ESIALFEKI 458
ES+ + ++I
Sbjct 631 ESVCIMKRI 639
>P23003 tRNA/tmRNA (uracil-C(5))-methyltransferase [Escherichia
coli (strain K12)]
Length=366
Score = 90.9 bits (224), Expect = 5e-23
Identities = 89/323 (28%), Positives = 153/323 (47%), Gaps = 43/323 (13%)
Query 142 DYRRRARVGVRYIPAKQKLIMGFREHGSNRLTPIQSCAVLDQRLSQALPELYDVLNRLVA 201
D + ++R+ V PA +LI + + + +++ VL +L Q D L L
Sbjct 65 DQQTKSRIRVDSFPAASELI---NQLMTAMIAGVRNNPVLRHKLFQI-----DYLTTLSN 116
Query 202 KAEIGHIELAMGDDEVSLLVRHLNTLPDSDITQLCDYAQHKNWQLYLQAKGSDSLKRVDR 261
+A + + DDE + L D + +N ++L + + + +D+
Sbjct 117 QAVVSLLYHKKLDDEWR-----------QEAEALRDALRAQNLNVHLIGRATKTKIELDQ 165
Query 262 SGAEMRLHYAVPAFNLNFAFSPLD--FTQVNATVNQQMLKLACDLLKLQKGEHVLDLFCG 319
+ RL P + ++ FTQ NA +N QML+ A D+ K KG+ +L+L+CG
Sbjct 166 DYIDERL----PVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCG 220
Query 320 LGNFSLPLARCVGDTGRVVGVEGSEEMVQRAFENAAQNALHNVEFY---SQDLTKDFSHH 376
GNFSL LAR + RV+ E ++ V A N A N + NV+ +++ T+ +
Sbjct 221 NGNFSLALAR---NFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGV 277
Query 377 SWAN--QGFD-------ALLIDPPRSGAFEIMHYIANFEAKRIVYVSCNPATLARDAGVL 427
N QG D + +DPPRSG + RI+Y+SCNP TL ++ L
Sbjct 278 REFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ-AYPRILYISCNPETLCKNLETL 336
Query 428 AQHGYQLKKVGVMDMFTHTEHVE 450
+Q ++++++ + D F +T H+E
Sbjct 337 SQ-THKVERLALFDQFPYTHHME 358
>P22038 tRNA/tmRNA (uracil-C(5))-methyltransferase [Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)]
Length=366
Score = 86.7 bits (213), Expect = 1e-21
Identities = 62/177 (35%), Positives = 96/177 (54%), Gaps = 18/177 (10%)
Query 286 FTQVNATVNQQMLKLACDLLKLQKGEHVLDLFCGLGNFSLPLARCVGDTGRVVGVEGSEE 345
FTQ NA +N QML+ A ++ K KG+ +L+L+CG GNFSL LAR + RV+ E ++
Sbjct 188 FTQPNAAMNIQMLEWALEVTKDSKGD-LLELYCGNGNFSLALAR---NFNRVLATEIAKP 243
Query 346 MVQRAFENAAQNALHNVEFY---SQDLTKDFSHHSWAN--QGFD-------ALLIDPPRS 393
V A N A N + NV+ +++ T+ + N QG D + +DPPRS
Sbjct 244 SVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRS 303
Query 394 GAFEIMHYIANFEAKRIVYVSCNPATLARDAGVLAQHGYQLKKVGVMDMFTHTEHVE 450
G + RI+Y+SCNP TL ++ L+Q + + ++ + D F +T H+E
Sbjct 304 GLDSETEKMVQ-AYPRILYISCNPETLCKNLETLSQ-THTVSRLALFDQFPYTHHME 358
Lambda K H a alpha
0.323 0.137 0.411 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3332480
Database: 95ce5222501d9ea66e196315e7bd5c87.SwissProt.fasta
Posted date: May 8, 2024 10:59 PM
Number of letters in database: 9,262
Number of sequences in database: 21
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
