BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 18712e0f2fa2c3b6e66884426f014d0b.SwissProt.fasta
18 sequences; 13,196 total letters
Query= ACIAD3099
Length=682
Score E
Sequences producing significant alignments: (Bits) Value
Q9I310 Uncharacterized signaling protein PA1727 [Pseudomonas aeru... 557 0.0
Q9HYT3 Uncharacterized signaling protein PA3311 [Pseudomonas aeru... 334 4e-107
O34311 Signaling protein YkoW [Bacillus subtilis (strain 168)] 295 3e-92
Q9ABX9 Uncharacterized signaling protein CC_0091 [Caulobacter vib... 266 2e-81
P77334 Cyclic di-GMP phosphodiesterase PdeR [Escherichia coli (st... 257 3e-79
Q55434 Phytochrome-like protein cph2 [Synechocystis sp. (strain P... 257 4e-76
P74101 Uncharacterized protein sll1895 [Synechocystis sp. (strain... 246 5e-75
P55552 Uncharacterized protein y4lL [Sinorhizobium fredii (strain... 249 7e-75
P64826 Uncharacterized protein Mb1389c [Mycobacterium bovis (stra... 224 2e-67
P9WM13 Uncharacterized protein Rv1354c [Mycobacterium tuberculosi... 224 2e-67
P9WM12 Uncharacterized protein MT1397 [Mycobacterium tuberculosis... 224 2e-67
P76129 Oxygen sensor protein DosP [Escherichia coli (strain K12)] 216 3e-63
Q9KU26 Biofilm architecture maintenance protein MbaA [Vibrio chol... 201 7e-58
Q8EJM6 Cyclic di-GMP phosphodiesterase PdeB [Shewanella oneidensi... 199 3e-57
Q04855 Uncharacterized protein AZC_3085 [Azorhizobium caulinodans... 172 4e-48
P76446 Probable cyclic di-GMP phosphodiesterase PdeN [Escherichia... 140 3e-38
P23842 Probable cyclic di-GMP phosphodiesterase PdeA [Escherichia... 138 7e-37
P21514 Cyclic di-GMP phosphodiesterase PdeL [Escherichia coli (st... 132 9e-37
>Q9I310 Uncharacterized signaling protein PA1727 [Pseudomonas
aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM
14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=685
Score = 557 bits (1436), Expect = 0.0
Identities = 304/684 (44%), Positives = 437/684 (64%), Gaps = 17/684 (2%)
Query 6 YDISLVIGSIVLAVIICFFAISLEQLIFKQRYERYQTLILIVSGLLLGLAIWSMHFLGML 65
Y+ LV S+++A++ + A+ + + + R LI +G IWSMHF+GML
Sbjct 6 YNQVLVAFSLIVAILASYTALDMAGRVTLAK-GREALSWLIGGAFAMGFGIWSMHFVGML 64
Query 66 ACHLPGDYHFDPGLTLFSYIIAFITSTFAVWLTTRESLPIARLILGSVLMGLGIAGMHYT 125
A LP +D GLTL S ++A +S FA+WL + LP RL LG++LMG GIA MHYT
Sbjct 65 AFSLPIPLGYDLGLTLLSLLLAVGSSAFALWLVCQAELPWQRLALGALLMGSGIAAMHYT 124
Query 126 GMMGLILHQYELHYEPLMVIFSVLIGVSGSGLAFSLIFKYKNATKNRILIQIAAAIAMAL 185
GM L++ + Y+PL + S+LI V SG A + F+ ++ ++ +L++ AA+ M
Sbjct 125 GMAALLMMP-GIVYDPLWLGLSILIAVIASGAALWIAFRLRHGSRRIVLVRAGAALVMGC 183
Query 186 AIVGLHYTGMSATFFSQQGVTSSLSLYQAGHGL----FLFTMIFITSLVLVAGYCIAVLE 241
AIVG+HYTGM+A F + AG G+ +I IT V+ ++VL+
Sbjct 184 AIVGMHYTGMAAAQFPLGSFCGA-----AGRGIDNGWLAVLVIVITLAVIAIALIVSVLD 238
Query 242 FRLEERNK----ALLKLNRELANLAVLDNLTKLPNRLFLMDYVKDRFSKTHQKDEKIAFL 297
RLE R +L + NREL LA+ DNLTKLPNR+ L D ++ + + D + A L
Sbjct 239 SRLEARTSVLATSLARANRELIQLALHDNLTKLPNRMLLDDRLEQAIQQAIRDDRRFAVL 298
Query 298 YLDLDRFKSVNDAFGHHVGDQLLIQVANRIQKHLDDHCKLLRIGGDEFLIIIEKRRTRQI 357
++DLD FK+VNDA+GHH+GD LLI+VA RI+ ++ + R+GGDEF+++IE R
Sbjct 299 FMDLDGFKAVNDAYGHHLGDLLLIEVAERIRANVRAQDTIARLGGDEFVLLIEAREPADA 358
Query 358 AQIAEDVLRQVQEAYLITSKEINISASIGIAIYPEHGNNMQDLLINADIAMVMAKDQGRN 417
A +AE +++++ + Y I+ E+ ISASIGIA+YP G +L+INAD AM AKDQGRN
Sbjct 359 ATLAEKLVKRISQPYQISRHEVRISASIGIALYPGDGQTRHELMINADAAMYHAKDQGRN 418
Query 418 TYSIFNYTSEHNETRSQSKLINDLYKAVEEQQFVLFYQAK-YAANLNICGVEALIRWQHP 476
Y F +S + + Q +L++DL +A+E +Q VL YQ K A N + GVEAL+RW+HP
Sbjct 419 GYCFFE-SSMNANAQEQLQLLHDLRQALERRQLVLHYQPKVLAPNGPMIGVEALLRWEHP 477
Query 477 TFGLLSPHMFIDGAEKTGLIIPMGYWALEQACKQIQIWEATQTVLYPIAVNLSAIQFENK 536
GL++P F+ AEKTGLI+ +G W L++AC+Q+++W + IAVNLSA+QF +
Sbjct 478 QHGLITPGQFLPLAEKTGLIVQIGEWVLDEACRQMRLWLDGGHADWNIAVNLSALQFAHA 537
Query 537 HLVGTLEKLIRKYQIRPNHLIIEITESTAMRHIDSSIATFEQMRALGIQIAIDDFGTGHS 596
LV ++ + ++ + P+HLI+E+TESTAMR D+S+ EQ+ A+G+ I+IDDFGTG+S
Sbjct 538 GLVDSVRNALLRHSLEPSHLILEVTESTAMRDADASLVILEQLSAMGVGISIDDFGTGYS 597
Query 597 SFLYLKDLPVDELKIDRGFIIHLHEGSKEEVILESIIHLATKLGLKVTAEGVETQLQADI 656
S LYLK LP ELKIDRGFI L S + I+ +I+ L L LK+ AEGVET+ Q +
Sbjct 598 SLLYLKRLPASELKIDRGFINELAHDSDDAAIVSAIVALGRTLNLKIVAEGVETEAQQEF 657
Query 657 LIRLGCQQLQGYLLGRPVPVEQLV 680
L RLGC LQG+LLGRP+P EQL+
Sbjct 658 LTRLGCNSLQGFLLGRPMPAEQLL 681
>Q9HYT3 Uncharacterized signaling protein PA3311 [Pseudomonas
aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM
14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=783
Score = 334 bits (857), Expect = 4e-107
Identities = 216/694 (31%), Positives = 359/694 (52%), Gaps = 22/694 (3%)
Query 1 MEHMDYDISLVIGSIVLAVIICFFAISLEQLIFKQRYERYQTLILIVSGLLLGLAIWSMH 60
+++ Y SLV + ++A + + A+ + + + + L + LG IW+ H
Sbjct 76 LQNCTYSPSLVALAFLVACLAGYTALDMVERVGNSL--SHPRLWQWIGAFCLGSGIWATH 133
Query 61 FLGMLACHLPGDYHFDPGLTLFSYIIAFITSTFAVWLTTRESLPIARLILGSVLMGLGIA 120
F+ MLA H P +D +T S +IA S +++T R + +L + +GLGIA
Sbjct 134 FVAMLAFHAPIALRYDLPITGLSLLIAVAASYLTMYMTARPRFGLLPCLLAACCIGLGIA 193
Query 121 GMHYTGMMGL--ILHQYELHYEPLMVIFSVLIGVSGSGLAFSLIFKYKNATKNRI-LIQI 177
MHYTGM + + QY Y+P + SVLI + + A + + + R +++
Sbjct 194 AMHYTGMAAMRSVATQY---YQPSLFALSVLIAIGAAFTALAAVPYLRGRRSARYRYMKL 250
Query 178 AAAIAMALAIVGLHYTGMSATFFSQQGVTSSLSLYQAGHGLFLFTMIFITSLVLVA---- 233
A++ +A AI +H+TGM+A S T L L + L L + + + + A
Sbjct 251 IASLLLAGAIAAMHFTGMAALVLSVPAGTP-LELQASADSLRLGWLTGVLASAIAACGIW 309
Query 234 -GYCIAVLEFRLEERNKALLKLNR------ELANLAVLDNLTKLPNRLFLMDYVKDRFSK 286
+ E RL E ++ LN+ L +A D+LT L NR +
Sbjct 310 AAWSEKQRERRLSENSRVNALLNQLDHAHASLRQMARYDSLTGLQNRTAFNEVFVQHLEN 369
Query 287 THQKDEKIAFLYLDLDRFKSVNDAFGHHVGDQLLIQVANRIQKHLDDHCKLLRIGGDEFL 346
+ + +A ++LDLD FK +ND+ GH GDQLL V+ RI+ L D + R GDEF
Sbjct 370 CRLRGKGLAVMFLDLDHFKRINDSLGHDSGDQLLKIVSERIRSVLRDSDVVARFAGDEFC 429
Query 347 IIIEKRRTRQIAQIAEDVLRQVQEAYLITSKEINISASIGIAIYPEHGNNMQDLLINADI 406
++ + + + +++ ++++++E + + + ++AS+G+++YP G ++LL NA +
Sbjct 430 VLADLTQDHEAHILSQRLMQKMKEPIALDGRTLVMTASVGVSLYPNDGEQCEELLKNAGL 489
Query 407 AMVMAKDQGRNTYSIFNYTSEHNETRSQSKLINDLYKAVEEQQFVLFYQAKYA-ANLNIC 465
A+ +K GRN F+ T+ + ++ +L +A+ + Q L YQ A A+ +
Sbjct 490 ALHQSKACGRNNAQFFSRQLLVRATQ-ELQMEEELRQALRDDQLELHYQPILALADGEVH 548
Query 466 GVEALIRWQHPTFGLLSPHMFIDGAEKTGLIIPMGYWALEQACKQIQIWEATQTVLYPIA 525
+EAL+RW+HPT GLL P FI AE G+I + W L +AC+ ++ +A
Sbjct 549 QLEALVRWRHPTQGLLGPDRFIGLAEANGMIDQLDDWVLRRACRDLRSLHLAGHERLRVA 608
Query 526 VNLSAIQFENKHLVGTLEKLIRKYQIRPNHLIIEITESTAMRHIDSSIATFEQMRALGIQ 585
VN A LV + + + + L +E+TE M +ID +I E++R LG+
Sbjct 609 VNCCASNLGRASLVDEVRHALEQAGLAACFLELEVTEDALMYNIDQTIPLLERLRELGVS 668
Query 586 IAIDDFGTGHSSFLYLKDLPVDELKIDRGFIIHLHEGSKEEVILESIIHLATKLGLKVTA 645
++IDDFGTG+SS YL+ LP+D LK+DR FI+ + ++ I ++II +A KL LKV A
Sbjct 669 LSIDDFGTGYSSLAYLRRLPLDALKVDRSFIMDIPASQRDMEIAQAIIAMAQKLHLKVVA 728
Query 646 EGVETQLQADILIRLGCQQLQGYLLGRPVPVEQL 679
EGVET Q L C+ +QGYL RP+P+ L
Sbjct 729 EGVETPQQLAFLRENHCELVQGYLFSRPLPLAAL 762
>O34311 Signaling protein YkoW [Bacillus subtilis (strain 168)]
Length=800
Score = 295 bits (756), Expect = 3e-92
Identities = 166/433 (38%), Positives = 255/433 (59%), Gaps = 7/433 (2%)
Query 253 KLNRELANLAVLDNLTKLPNRLFLMDYVKDRFSKTHQKDEKIAFLYLDLDRFKSVNDAFG 312
K +E+ +A D+LT LPNR + ++ ++ H +LDL+RFK +NDA G
Sbjct 363 KAEKEIHRMAHYDSLTDLPNRRHAISHLTKVLNREHSLHYNTVVFFLDLNRFKVINDALG 422
Query 313 HHVGDQLLIQVANRIQKHLDDHCKLLRIGGDEFLIIIEKRRTR--QIAQIAEDVLRQVQE 370
H+VGDQLL A R+ + D+ + R+GGDEF+II+ T + +A ++++ ++
Sbjct 423 HNVGDQLLQFAAKRLSSVVPDNGFIARLGGDEFIIILTDANTGTGEADVLARKIIQKFKK 482
Query 371 AYLITSKEINISASIGIAIYPEHGNNMQDLLINADIAMVMAKDQGRNTYSIFNYTSEHNE 430
+ I + S SIGIAI P+ G + +L+ AD+AM AK++ ++ Y ++++ + E
Sbjct 483 PFKIQDHTLVTSVSIGIAISPKDGTDGLELMKKADMAMYAAKERNKSKYRYYSFSIGNKE 542
Query 431 T-RSQSKLINDLYKAVEEQQFVLFYQAKYAANLN-ICGVEALIRWQHPTFGLLSPHMFID 488
T + +++ L +A+E +FVL YQ +++ + G EALIR P L P FI
Sbjct 543 TVKLNQEMV--LREAIENDRFVLHYQPQFSVKKQKMTGAEALIRLVTPDGQLRPPGEFIG 600
Query 489 GAEKTGLIIPMGYWALEQACKQIQIWEATQTVLYPIAVNLSAIQFENKHLVGTLEKLIRK 548
AE+TGLII +G W +++ACKQ +IW L +A+N+SA QF++K L+ ++ + K
Sbjct 601 VAEETGLIIDIGKWIIDEACKQARIWHDKGYDL-SVAINISARQFQSKDLIPLIKDTLNK 659
Query 549 YQIRPNHLIIEITESTAMRHIDSSIATFEQMRALGIQIAIDDFGTGHSSFLYLKDLPVDE 608
YQ+ P L +E+TES M +++ S + LGI+I+IDDFGTGHSS YLKD P+
Sbjct 660 YQLPPQLLEVEVTESMTMDNLNHSKKVLSSLTELGIRISIDDFGTGHSSLSYLKDFPIHR 719
Query 609 LKIDRGFIIHLHEGSKEEVILESIIHLATKLGLKVTAEGVETQLQADILIRLGCQQLQGY 668
LKID+ FI + K E I +II + +L L+V AEGVE Q +L GC LQG+
Sbjct 720 LKIDKSFIDDIQTHPKSEQITGAIIAMGHQLSLQVIAEGVENAAQKQLLFEKGCDHLQGF 779
Query 669 LLGRPVPVEQLVQ 681
RP+P EQ Q
Sbjct 780 FFSRPIPPEQFEQ 792
Score = 110 bits (275), Expect = 6e-28
Identities = 83/301 (28%), Positives = 152/301 (50%), Gaps = 23/301 (8%)
Query 3 HMDYDISLVIGSIVLAVIICFFAISLEQLIFKQRYERYQTLILIVSGLLLGLAIWSMHFL 62
H+ Y+ +L+ SI++A + ++ L + + + + + LI L++G IWSMHF+
Sbjct 4 HVTYNTTLICLSILIACTASYISLELSRKVTINTGLKSK-IWLIGGSLIMGFGIWSMHFV 62
Query 63 GMLACH--LPGDYHFDPGLTLFSYIIAFITSTF-AVWLTTRESLPIARLILGSVLMGLGI 119
GM+A H +P +Y F P L + I A ++ +F +++ +R L RL+ GSV++G I
Sbjct 63 GMMAVHMEMPMEYEFMP---LMAAIGASVSGSFVSLYFVSRHILTYYRLLTGSVVLGASI 119
Query 120 AGMHYTGMMGLILHQYELHYEPLMVIFSVLIGVSGSGLAFSLIF--KYKNATKNRILIQI 177
A MHY GM + + + YEP++ S++I ++ S ++ + F K +++ I +
Sbjct 120 ASMHYIGMSA--ISRVMIIYEPILFTVSIIIAIAASFVSLKIFFDLAVKKHSEHLIFYKG 177
Query 178 AAAIAMALAIVGLHYTGM-SATFFSQQGVTSSLSLYQAGHGLFLFTMIF--ITSLVLVAG 234
++I M + I G+HYTGM +ATF S Q H T+I I +L+L +
Sbjct 178 VSSIVMGIGISGMHYTGMLAATFHKDMAPPGSHMEVQTFHWSIFVTLIIFCIQTLLLFSS 237
Query 235 YCIAVLEFRLEERNKALLKLNRELANLAVLDNLTKLPNRLFLMDYVKDRFSKTHQKDEKI 294
+ R + +K N + ++ N+ + +F++ D S H +E I
Sbjct 238 HA-----DRKFIKQSERIKDNEQRFQSLIVHNI----DAIFILSLEGDIISSNHAGEEMI 288
Query 295 A 295
+
Sbjct 289 S 289
>Q9ABX9 Uncharacterized signaling protein CC_0091 [Caulobacter
vibrioides (strain ATCC 19089 / CB15)]
Length=809
Score = 266 bits (681), Expect = 2e-81
Identities = 155/447 (35%), Positives = 241/447 (54%), Gaps = 13/447 (3%)
Query 237 IAVLEFR-LEERNKALLKLNRELANLAVLDNLTKLPNRLFLMDYVKDRFSKTHQKDEKIA 295
+ VL R L ER A ++ LA D LT L NR L + + E +A
Sbjct 350 LTVLAVRDLRERRAA----EEKIRYLAEHDGLTGLLNRNSLQMRLAAAIDRVEASGESLA 405
Query 296 FLYLDLDRFKSVNDAFGHHVGDQLLIQVANRIQKHLDDHCKLLRIGGDEFLI--IIEKRR 353
+ +DLD FK ND GH GD LL++ A R+Q + R+GGDEF++ I +
Sbjct 406 VICIDLDHFKEANDQHGHLAGDALLVETARRLQSAVQAPSFAARLGGDEFIVVQIAGGDQ 465
Query 354 TRQIAQIAEDVLRQVQEAYLITSKEINISASIGIAIYPEHGNNMQDLLINADIAMVMAKD 413
A++A ++ + +E+ + +S+G+++YP+ G + L+ NAD+A+ AK+
Sbjct 466 PAVAAELAGRLIEMLAAPVPFDGQELAMGSSLGVSLYPDDGRTAEALMANADMALYRAKE 525
Query 414 QGRNTYSIFNYTSEHNETRSQSKLINDLYKAVEEQQFVLFYQA-KYAANLNICGVEALIR 472
GR Y F + + R + L DL + + + + ++ YQ AA+ +CG EAL+R
Sbjct 526 SGRGVYRFFKREMD-DTIRERRNLARDLRQGIADNELIVHYQPLARAADGEVCGFEALVR 584
Query 473 WQHPTFGLLSPHMFIDGAEKTGLIIPMGYWALEQACKQIQIWEATQTVLYPIAVNLSAIQ 532
W+HPT G++ P FI AE+ GLI +G W L +AC WE IAVNLS IQ
Sbjct 585 WKHPTRGMIPPLDFIPVAEENGLIEALGDWVLRRACADAAAWEKPLR----IAVNLSPIQ 640
Query 533 FENKHLVGTLEKLIRKYQIRPNHLIIEITESTAMRHIDSSIATFEQMRALGIQIAIDDFG 592
N L + +++ + P+ L +EITES + ++ +++ALG++IA+DDFG
Sbjct 641 LHNPALPTLVHEVLITTGLSPSRLELEITESALFKDYQRALDNLRRLKALGVRIAMDDFG 700
Query 593 TGHSSFLYLKDLPVDELKIDRGFIIHLHEGSKEEVILESIIHLATKLGLKVTAEGVETQL 652
TG SS L+ P D++KID+ F+ ++H + I+ +++ L L + V AEGVET+
Sbjct 701 TGFSSLSTLQSFPFDKIKIDKSFVENIHRHDRATAIVRAVLGLGRSLEIPVVAEGVETEE 760
Query 653 QADILIRLGCQQLQGYLLGRPVPVEQL 679
Q L C +LQGY +GRP PV+ L
Sbjct 761 QILFLRGEDCAELQGYAIGRPAPVDAL 787
Score = 86.7 bits (213), Expect = 2e-20
Identities = 79/262 (30%), Positives = 124/262 (47%), Gaps = 22/262 (8%)
Query 6 YDISLVIGSIVLAVIICFFAISLEQLIFKQRYER--YQTLILIVSGLLLGLAIWSMHFLG 63
+D+ LV+ + + + CF +L + R R + L+++GL+ G ++W+ HF+
Sbjct 19 HDLRLVLVASAVCLAGCFTTF---RLYSRMRGARGVVRAAWLLLTGLVAGSSVWATHFIA 75
Query 64 MLACHLPGDYHFDPGLTLFSYIIA--FITSTFAVWLTTRESLPIARLILGSVLMGLGIAG 121
M+A + P TL S +IA F+ S FAV R + G VL+GLG+A
Sbjct 76 MVAFTPGLKTGYSPTGTLLSLMIAALFMASGFAVASAQRST---TNDFAGGVLIGLGVAA 132
Query 122 MHYTGMMGLILHQYELHYEPLMVIFSVLIGVSGSGLAFSLIFKYKNATKNRILIQIAAAI 181
MHY GM + Q +L +E V S ++GV G+ A L T I Q
Sbjct 133 MHYMGMSAFVT-QGQLVWEHATVGMSAVLGVGGATAALLLA-----GTARTIRRQAVGGG 186
Query 182 AMALAIVGLHYTGMSA-TFFSQQGVTSSLSLYQAGHGLFLFTMIFITSLVLVAGYCIAVL 240
+ L IV LH+TGMSA T +T L G+ + ITS++++ G +
Sbjct 187 MLCLGIVMLHFTGMSAITIVPDASLTVPDQLLSG--GMLTLAVGSITSMIILGGLGAVAI 244
Query 241 EFRLEERNKALLKLNRELANLA 262
E + +++ L+ R LAN A
Sbjct 245 E---SQTSRSALERIRRLANAA 263
>P77334 Cyclic di-GMP phosphodiesterase PdeR [Escherichia coli
(strain K12)]
Length=661
Score = 257 bits (657), Expect = 3e-79
Identities = 157/468 (34%), Positives = 255/468 (54%), Gaps = 22/468 (5%)
Query 215 GHGLFLFTMIFITS------LVLVAGYCIAVLEFRLEERNKALLKLNRELANLAVLDNLT 268
G LFLF F+ S + L+ E R +ER L LA D++T
Sbjct 194 GQRLFLFRNKFVHSGSGKNEIFLICSGTDITEERRAQER----------LRILANTDSIT 243
Query 269 KLPNRLFLMDYVKDRFSKTHQKDEKIAFLYLDLDRFKSVNDAFGHHVGDQLLIQVANRIQ 328
LPNR + D + + H + K+ +YLDLD FK VNDA+GH GDQLL V+ I
Sbjct 244 GLPNRNAMQDLIDHAIN--HADNNKVGVVYLDLDNFKKVNDAYGHLFGDQLLRDVSLAIL 301
Query 329 KHLDDHCKLLRIGGDEFLIIIEKRRTRQIAQIAEDVLRQVQEAYLITSKEINISASIGIA 388
L+ L R GGDEFL++ + +A +L +++ + I E+ S S+GIA
Sbjct 302 SCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRILTRLRLPFRIGLIEVYTSCSVGIA 361
Query 389 IYPEHGNNMQDLLINADIAMVMAKDQGRNTYSIFNYTSEHNETRSQSK-LINDLYKAVEE 447
+ PEHG++ ++ +AD AM AK+ GR + +F T E N+ + L +L KA+E
Sbjct 362 LSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVF--TPEMNQRVFEYLWLDTNLRKALEN 419
Query 448 QQFVLFYQAKYAANLNICGVEALIRWQHPTFGLLSPHMFIDGAEKTGLIIPMGYWALEQA 507
Q V+ YQ K + +EAL+RWQ P GL+ P FI AE++GLI+P+G W +
Sbjct 420 DQLVIHYQPKITWRGEVRSLEALVRWQSPERGLIPPLDFISYAEESGLIVPLGRWVILDV 479
Query 508 CKQIQIWEATQTVLYPIAVNLSAIQFENKHLVGTLEKLIRKYQIRPNHLIIEITESTAMR 567
+Q+ W + + +AVN+SA Q ++ + L++++++ + +E+TES +
Sbjct 480 VRQVAKWR-DKGINLRVAVNISARQLADQTIFTALKQVLQELNFEYCPIDVELTESCLIE 538
Query 568 HIDSSIATFEQMRALGIQIAIDDFGTGHSSFLYLKDLPVDELKIDRGFIIHLHEGSKEEV 627
+ + +++ +Q LG Q+ +DDFGTG+SS L P+D +K+D+ F+ +H+ +
Sbjct 539 NDELALSVIQQFSQLGAQVHLDDFGTGYSSLSQLARFPIDAIKLDQVFVRDIHKQPVSQS 598
Query 628 ILESIIHLATKLGLKVTAEGVETQLQADILIRLGCQQLQGYLLGRPVP 675
++ +I+ +A L L+V AEGVE+ + L + G + QG+L +P+P
Sbjct 599 LVRAIVAVAQALNLQVIAEGVESAKEDAFLTKNGINERQGFLFAKPMP 646
>Q55434 Phytochrome-like protein cph2 [Synechocystis sp. (strain
PCC 6803 / Kazusa)]
Length=1276
Score = 257 bits (656), Expect = 4e-76
Identities = 151/433 (35%), Positives = 241/433 (56%), Gaps = 7/433 (2%)
Query 254 LNRELANLAVLDNLTKLPNRLFLMDYVKDRFSKTHQKDEKIAFLYLDLDRFKSVNDAFGH 313
+ R + D LT+LPN + + + + + L + +DRFK +N++FGH
Sbjct 423 VTRLITQQTAYDPLTQLPNWIIFNRQLTLALLDALYEGKMVGVLVIAMDRFKRINESFGH 482
Query 314 HVGDQLLIQVANRIQKHLDDHCK----LLRIGGDEFLIIIEKRRTRQ-IAQIAEDVLRQV 368
GD LL +VA+R+ + L L R GD F I++ + Q + + E +L
Sbjct 483 KTGDGLLQEVADRLNQKLSPLAAYSPLLSRWHGDGFTILLTQISDNQEMIPLCERLLSTF 542
Query 369 QEAYLITSKEINISASIGIAIYPEHGNNMQDLLINADIAMVMAKDQGRNTYSIFNYTSEH 428
QE + + + I ++AS+GI+ P G + LL A+IA+ AK QG+NTY + +
Sbjct 543 QEPFFLQGQPIYLTASMGISTAPYDGETAESLLKFAEIALTRAKCQGKNTYQFYR-PQDS 601
Query 429 NETRSQSKLINDLYKAVEEQQFVLFYQAKYAANLN-ICGVEALIRWQHPTFGLLSPHMFI 487
+ L +DL +A+ Q+FVL++Q + A + + GVEAL+RWQHP G ++P +FI
Sbjct 602 APMLDRLTLESDLRQALTNQEFVLYFQPQVALDTGKLLGVEALVRWQHPRLGQVAPDVFI 661
Query 488 DGAEKTGLIIPMGYWALEQACKQIQIWEATQTVLYPIAVNLSAIQFENKHLVGTLEKLIR 547
AE+ GLI +G W LE AC Q + +AVN+SA QF+++ + ++ + ++
Sbjct 662 PLAEELGLINHLGQWVLETACATHQHFFRETGRRLRMAVNISARQFQDEKWLNSVLECLK 721
Query 548 KYQIRPNHLIIEITESTAMRHIDSSIATFEQMRALGIQIAIDDFGTGHSSFLYLKDLPVD 607
+ + P L +EITES M I ++ ++R G+Q+AIDDFGTG+SS LK LP+
Sbjct 722 RTGMPPEDLELEITESLMMEDIKGTVVLLHRLREEGVQVAIDDFGTGYSSLSILKQLPIH 781
Query 608 ELKIDRGFIIHLHEGSKEEVILESIIHLATKLGLKVTAEGVETQLQADILIRLGCQQLQG 667
LKID+ F+ L + I++ +I LA L L+ AEG+E++ Q L ++GC QG
Sbjct 782 RLKIDKSFVNDLLNEGADTAIIQYVIDLANGLNLETVAEGIESEAQLQRLQKMGCHLGQG 841
Query 668 YLLGRPVPVEQLV 680
Y L RP+P E ++
Sbjct 842 YFLTRPLPAEAMM 854
Score = 78.2 bits (191), Expect = 1e-17
Identities = 61/195 (31%), Positives = 98/195 (50%), Gaps = 11/195 (6%)
Query 231 LVAGYCIAVLEFRLEERNKALLKLNRELANLAVLDNLTKLPNRLFLMDYVKDRFSKTHQK 290
L IA+ + L E+ L N L ++ LD LT++ NR ++ + + +
Sbjct 1072 LATQVAIAIHQGELYEQ---LETANIRLQQISSLDALTQVGNRYLFDSTLEREWQRLQRI 1128
Query 291 DEKIAFLYLDLDRFKSVNDAFGHHVGDQLLIQVANRIQKHLDDHCKLL-RIGGDEFLIII 349
E +A L D+D FK ND +GH GD+ L ++A+ + K L+ R GG+EF II+
Sbjct 1129 REPLALLLCDVDFFKGFNDNYGHPAGDRCLKKIADAMAKVAKRPTDLVARYGGEEFAIIL 1188
Query 350 EKRRTRQIAQIAEDVLRQVQEAYLITSKEI----NISASIGIAIY-PEHGNNMQDLLINA 404
+ + E + QV+ A L + +++ SIGIA+Y PE N L+ A
Sbjct 1189 SETSLEGAINVTEAL--QVEVANLAIPHTVSGTGHVTLSIGIAVYTPERHINPNALVKAA 1246
Query 405 DIAMVMAKDQGRNTY 419
D+A+ AK +GRN +
Sbjct 1247 DLALYEAKAKGRNQW 1261
>P74101 Uncharacterized protein sll1895 [Synechocystis sp. (strain
PCC 6803 / Kazusa)]
Length=696
Score = 246 bits (629), Expect = 5e-75
Identities = 138/415 (33%), Positives = 225/415 (54%), Gaps = 3/415 (1%)
Query 262 AVLDNLTKLPNRLFLMDYVKDRFSKTHQKDEKIAFLYLDLDRFKSVNDAFGHHVGDQLLI 321
A D LT LPNR + S + + + L +S+ND GH V D++L
Sbjct 263 AFYDPLTDLPNRFLFKQELGKVLSNVQNQSSVLGLVLLGFRELQSLNDLLGHSVADEVLK 322
Query 322 QVANRIQKHLDDHCKLLRIGGDEFLIIIEK-RRTRQIAQIAEDVLRQVQEAYLITSKEIN 380
+ R+ H+ L R GD F+++I+ R +I +L ++ + I + +
Sbjct 323 IITERLSAHVRLEDLLCRWRGDTFILLIQSCRNLDEIEVFVRRLLAVLKRPFFIANNPLY 382
Query 381 ISASIGIAIYPEHGNNMQDLLINADIAMVMAKDQGRNTYSIFNYTSEHNETRSQSKLIND 440
+ GIA YP HG+N++ LL IA+ KD G Y + S +++ + +L +
Sbjct 383 LQGYAGIACYPNHGDNVEILLNRVGIALNEVKDIGSRQYCFYE-ESMNSDHLERIQLEHA 441
Query 441 LYKAVEEQQFVLFYQAKYAANLN-ICGVEALIRWQHPTFGLLSPHMFIDGAEKTGLIIPM 499
L++A+E +F+L+YQ +CGVEALIRWQHP GL+SP +FI E TGLIIP+
Sbjct 442 LHQALERDEFLLYYQPIIDVQSGRLCGVEALIRWQHPIHGLVSPGLFIGLLETTGLIIPV 501
Query 500 GYWALEQACKQIQIWEATQTVLYPIAVNLSAIQFENKHLVGTLEKLIRKYQIRPNHLIIE 559
G W + A + W + IA+NLS QF+ L+ T+ +++ + + P+ L +E
Sbjct 502 GEWIMRTAFQHFHHWAPAVDDDFRIAINLSPQQFQAPDLLPTILRILAESSLPPHRLEVE 561
Query 560 ITESTAMRHIDSSIATFEQMRALGIQIAIDDFGTGHSSFLYLKDLPVDELKIDRGFIIHL 619
ITE+ M+++ ++ +++ GI++++DDFGTG+SS YLK P + LKIDR F +
Sbjct 562 ITENIVMQNVTATQNLLNALQSHGIRLSMDDFGTGYSSLSYLKTFPFNTLKIDRSFTKDI 621
Query 620 HEGSKEEVILESIIHLATKLGLKVTAEGVETQLQADILIRLGCQQLQGYLLGRPV 674
K+ I+++++ L L + AEG+E + QA L LGC+++QGY P+
Sbjct 622 LHTPKDAAIIQAMLLLGNGFNLNIIAEGIEEEPQARCLYDLGCREMQGYWFSHPL 676
>P55552 Uncharacterized protein y4lL [Sinorhizobium fredii (strain
NBRC 101917 / NGR234)]
Length=827
Score = 249 bits (635), Expect = 7e-75
Identities = 155/450 (34%), Positives = 244/450 (54%), Gaps = 16/450 (4%)
Query 234 GYCIAVLEFRLEERNKALLKLNRELANLAVLDNLTKLPNRLFLMDYVKDRFSKTHQKDEK 293
G + + E R E+ + L + +++ ++A D LT LPNR FL + +R S +
Sbjct 373 GIALDITERRNAEQERLLAQ--KQIHHMARHDALTGLPNRQFLREEF-ERLSDHIAPSTR 429
Query 294 IAFLYLDLDRFKSVNDAFGHHVGDQLLIQVANRIQKHLDDHCKLLRIGGDEFLII-IEKR 352
+A L LDLD FK++NDA+G GD LL V R++ L L R+ GDEF+++ +
Sbjct 430 LAILCLDLDGFKAINDAYGRATGDLLLRHVTERLRNFLKQSDILCRLSGDEFVVLRVGIN 489
Query 353 RTRQIAQIAEDVLRQVQEAYLITSKEINISASIGIAIYPEHGNNMQDLLINADIAMVMAK 412
+ +A+ ++ ++ Y + +++ +G+A + ++ +L+ ADIA+ AK
Sbjct 490 SNAEARLLAQQLIDVIEAPYELAGTHVDLQVVVGLAAASKSDQSLDELIKTADIALERAK 549
Query 413 DQGRNTYSIFNYTSEHN-ETRSQSKLINDLYKAVEEQQFVLFYQAKYAANLN---ICGVE 468
G T I Y + + + R++ ++ L A+ + + + YQ ANL I E
Sbjct 550 TGGGGT--IVQYEPKMDADLRARQRMKVSLRHALAKGELEVRYQP--LANLRTGQITTFE 605
Query 469 ALIRWQHPTFGLLSPHMFIDGAEKTGLIIPMGYWALEQACKQIQIWEATQTVLYPIAVNL 528
AL RW HP G +SP FI AE+TGLI P+G W L QAC + W +V AVNL
Sbjct 606 ALARWPHPERGQVSPAEFIAVAEETGLIGPLGEWILRQACTEAVKWPPYVSV----AVNL 661
Query 529 SAIQFENKHLVGTLEKLIRKYQIRPNHLIIEITESTAMRHIDSSIATFEQMRALGIQIAI 588
S +QF N+ L T+ + + + L +EITES + DS++ T +++R LG+ +AI
Sbjct 662 SPLQFRNQRLASTVRNSLEDTGLDASRLQLEITESVLLEECDSNLQTLKEIRQLGVIVAI 721
Query 589 DDFGTGHSSFLYLKDLPVDELKIDRGFIIHLHEGSKEEVILESIIHLATKLGLKVTAEGV 648
DDFGTG+SS YL+ P D++K+DR FI L + + I+ ++ + LG+ T EGV
Sbjct 722 DDFGTGYSSLSYLRTFPFDKIKVDRSFIADLPKSKESLAIVRAVAAIGRSLGIITTVEGV 781
Query 649 ETQLQADILIRLGCQQLQGYLLGRPVPVEQ 678
E Q Q D + G + QGYL G P+P Q
Sbjct 782 ERQDQLDTIKAEGFDEAQGYLFGGPLPASQ 811
>P64826 Uncharacterized protein Mb1389c [Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97)]
Length=623
Score = 224 bits (571), Expect = 2e-67
Identities = 151/437 (35%), Positives = 232/437 (53%), Gaps = 12/437 (3%)
Query 249 KALLKLNRELANLAVLDNLTKLPNRLFLMDYVKDRFSKTHQKDEKIAFLYLDLDRFKSVN 308
+A + L LA D+LT L NR L+ ++ R + + +A L+LDLDR K++N
Sbjct 171 QARVAAEARLRYLADHDDLTGLHNRRALLQHLDQRLAPG--QPGPVAALFLDLDRLKAIN 228
Query 309 DAFGHHVGDQLLIQVANRIQKHLDDHCKLLRIGGDEFLIIIEKRRTRQIAQ-IAEDVLRQ 367
D GH GDQ + A RI L + R+GGDEF++I + AQ +AE + Q
Sbjct 229 DYLGHAAGDQFIHVFAQRIGDALVGESLIARLGGDEFVLIPASPMSADAAQPLAERLRDQ 288
Query 368 VQEAYLITSKEINISASIGIAIYPEHGNNMQDLLINADIAMVMAKDQGRNTYSIFNYT-S 426
+++ I + + + SIG+A + DLL AD A + AK G ++ +IF S
Sbjct 289 LKDHVAIGGEVLTRTVSIGVASGTPGQHTPSDLLRRADQAALAAKHAGGDSVAIFTADMS 348
Query 427 EHNETRSQSKLINDLYKAVEEQQFVLFYQAKYAANL-NICGVEALIRWQHPTFGLLSPHM 485
E R+ +L L + +E L Y + +I G EAL+RWQHPT GLL+P
Sbjct 349 VSGELRNDIEL--HLRRGIESDALRLVYLPEVDLRTGDIVGTEALVRWQHPTRGLLAPGC 406
Query 486 FIDGAEKTGLIIPMGYWALEQACKQIQIWEAT---QTVLYPIAVNLSAIQFENKHLVGTL 542
FI AE L + W L +AC + W++ L + +N+SA Q V +
Sbjct 407 FIPVAESINLAGELDRWVLRRACNEFSEWQSAGLGHDAL--LRINVSAGQLVTGGFVDFV 464
Query 543 EKLIRKYQIRPNHLIIEITESTAMRHIDSSIATFEQMRALGIQIAIDDFGTGHSSFLYLK 602
I ++ + + + +EITE+ ++ + ++ AT +++ +G+ IAIDDFGTG+S+ L+
Sbjct 465 ADTIGQHGLDASSVCLEITENVVVQDLHTARATLARLKEVGVHIAIDDFGTGYSAISLLQ 524
Query 603 DLPVDELKIDRGFIIHLHEGSKEEVILESIIHLATKLGLKVTAEGVETQLQADILIRLGC 662
LP+D LKID+ F+ L + + VI+ I+ LA L V AEGVET+ A IL+ C
Sbjct 525 TLPIDTLKIDKTFVRQLGTNTSDLVIVRGIMTLAEGFQLDVVAEGVETEAAARILLDQRC 584
Query 663 QQLQGYLLGRPVPVEQL 679
+ QG+L RPVP E +
Sbjct 585 YRAQGFLFSRPVPGEAM 601
>P9WM13 Uncharacterized protein Rv1354c [Mycobacterium tuberculosis
(strain ATCC 25618 / H37Rv)]
Length=623
Score = 224 bits (571), Expect = 2e-67
Identities = 151/437 (35%), Positives = 232/437 (53%), Gaps = 12/437 (3%)
Query 249 KALLKLNRELANLAVLDNLTKLPNRLFLMDYVKDRFSKTHQKDEKIAFLYLDLDRFKSVN 308
+A + L LA D+LT L NR L+ ++ R + + +A L+LDLDR K++N
Sbjct 171 QARVAAEARLRYLADHDDLTGLHNRRALLQHLDQRLAPG--QPGPVAALFLDLDRLKAIN 228
Query 309 DAFGHHVGDQLLIQVANRIQKHLDDHCKLLRIGGDEFLIIIEKRRTRQIAQ-IAEDVLRQ 367
D GH GDQ + A RI L + R+GGDEF++I + AQ +AE + Q
Sbjct 229 DYLGHAAGDQFIHVFAQRIGDALVGESLIARLGGDEFVLIPASPMSADAAQPLAERLRDQ 288
Query 368 VQEAYLITSKEINISASIGIAIYPEHGNNMQDLLINADIAMVMAKDQGRNTYSIFNYT-S 426
+++ I + + + SIG+A + DLL AD A + AK G ++ +IF S
Sbjct 289 LKDHVAIGGEVLTRTVSIGVASGTPGQHTPSDLLRRADQAALAAKHAGGDSVAIFTADMS 348
Query 427 EHNETRSQSKLINDLYKAVEEQQFVLFYQAKYAANL-NICGVEALIRWQHPTFGLLSPHM 485
E R+ +L L + +E L Y + +I G EAL+RWQHPT GLL+P
Sbjct 349 VSGELRNDIEL--HLRRGIESDALRLVYLPEVDLRTGDIVGTEALVRWQHPTRGLLAPGC 406
Query 486 FIDGAEKTGLIIPMGYWALEQACKQIQIWEAT---QTVLYPIAVNLSAIQFENKHLVGTL 542
FI AE L + W L +AC + W++ L + +N+SA Q V +
Sbjct 407 FIPVAESINLAGELDRWVLRRACNEFSEWQSAGLGHDAL--LRINVSAGQLVTGGFVDFV 464
Query 543 EKLIRKYQIRPNHLIIEITESTAMRHIDSSIATFEQMRALGIQIAIDDFGTGHSSFLYLK 602
I ++ + + + +EITE+ ++ + ++ AT +++ +G+ IAIDDFGTG+S+ L+
Sbjct 465 ADTIGQHGLDASSVCLEITENVVVQDLHTARATLARLKEVGVHIAIDDFGTGYSAISLLQ 524
Query 603 DLPVDELKIDRGFIIHLHEGSKEEVILESIIHLATKLGLKVTAEGVETQLQADILIRLGC 662
LP+D LKID+ F+ L + + VI+ I+ LA L V AEGVET+ A IL+ C
Sbjct 525 TLPIDTLKIDKTFVRQLGTNTSDLVIVRGIMTLAEGFQLDVVAEGVETEAAARILLDQRC 584
Query 663 QQLQGYLLGRPVPVEQL 679
+ QG+L RPVP E +
Sbjct 585 YRAQGFLFSRPVPGEAM 601
>P9WM12 Uncharacterized protein MT1397 [Mycobacterium tuberculosis
(strain CDC 1551 / Oshkosh)]
Length=623
Score = 224 bits (571), Expect = 2e-67
Identities = 151/437 (35%), Positives = 232/437 (53%), Gaps = 12/437 (3%)
Query 249 KALLKLNRELANLAVLDNLTKLPNRLFLMDYVKDRFSKTHQKDEKIAFLYLDLDRFKSVN 308
+A + L LA D+LT L NR L+ ++ R + + +A L+LDLDR K++N
Sbjct 171 QARVAAEARLRYLADHDDLTGLHNRRALLQHLDQRLAPG--QPGPVAALFLDLDRLKAIN 228
Query 309 DAFGHHVGDQLLIQVANRIQKHLDDHCKLLRIGGDEFLIIIEKRRTRQIAQ-IAEDVLRQ 367
D GH GDQ + A RI L + R+GGDEF++I + AQ +AE + Q
Sbjct 229 DYLGHAAGDQFIHVFAQRIGDALVGESLIARLGGDEFVLIPASPMSADAAQPLAERLRDQ 288
Query 368 VQEAYLITSKEINISASIGIAIYPEHGNNMQDLLINADIAMVMAKDQGRNTYSIFNYT-S 426
+++ I + + + SIG+A + DLL AD A + AK G ++ +IF S
Sbjct 289 LKDHVAIGGEVLTRTVSIGVASGTPGQHTPSDLLRRADQAALAAKHAGGDSVAIFTADMS 348
Query 427 EHNETRSQSKLINDLYKAVEEQQFVLFYQAKYAANL-NICGVEALIRWQHPTFGLLSPHM 485
E R+ +L L + +E L Y + +I G EAL+RWQHPT GLL+P
Sbjct 349 VSGELRNDIEL--HLRRGIESDALRLVYLPEVDLRTGDIVGTEALVRWQHPTRGLLAPGC 406
Query 486 FIDGAEKTGLIIPMGYWALEQACKQIQIWEAT---QTVLYPIAVNLSAIQFENKHLVGTL 542
FI AE L + W L +AC + W++ L + +N+SA Q V +
Sbjct 407 FIPVAESINLAGELDRWVLRRACNEFSEWQSAGLGHDAL--LRINVSAGQLVTGGFVDFV 464
Query 543 EKLIRKYQIRPNHLIIEITESTAMRHIDSSIATFEQMRALGIQIAIDDFGTGHSSFLYLK 602
I ++ + + + +EITE+ ++ + ++ AT +++ +G+ IAIDDFGTG+S+ L+
Sbjct 465 ADTIGQHGLDASSVCLEITENVVVQDLHTARATLARLKEVGVHIAIDDFGTGYSAISLLQ 524
Query 603 DLPVDELKIDRGFIIHLHEGSKEEVILESIIHLATKLGLKVTAEGVETQLQADILIRLGC 662
LP+D LKID+ F+ L + + VI+ I+ LA L V AEGVET+ A IL+ C
Sbjct 525 TLPIDTLKIDKTFVRQLGTNTSDLVIVRGIMTLAEGFQLDVVAEGVETEAAARILLDQRC 584
Query 663 QQLQGYLLGRPVPVEQL 679
+ QG+L RPVP E +
Sbjct 585 YRAQGFLFSRPVPGEAM 601
>P76129 Oxygen sensor protein DosP [Escherichia coli (strain K12)]
Length=799
Score = 216 bits (550), Expect = 3e-63
Identities = 135/428 (32%), Positives = 220/428 (51%), Gaps = 8/428 (2%)
Query 253 KLNRELANLAVLDNLTKLPNRLFLMDYVKDRFSKTHQKDEKIAFLYLDLDRFKSVNDAFG 312
K + + L D +T LPNR L +Y+ D K + +L + +D + V D+ G
Sbjct 367 KSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDKAVSP---VVYL-IGVDHIQDVIDSLG 422
Query 313 HHVGDQLLIQVANRIQKHLDDHCKLLRIGGDEFLIIIEKRRTRQIAQIAEDVLRQVQEAY 372
+ DQ L++V NR ++ L L RI G +F+++ + I QIA+++ V +
Sbjct 423 YAWADQALLEVVNRFREKLKPDQYLCRIEGTQFVLVSLENDVSNITQIADELRNVVSKPI 482
Query 373 LITSKEINISASIGIAIYPEHGNNMQDLLINADIAMVMAKDQGRNTYSIFNYTSEHNETR 432
+I K ++ SIGI+ + G N LL A AM + G N + F+ + + +
Sbjct 483 MIDDKPFPLTLSIGISY--DLGKNRDYLLSTAHNAMDYIRKNGGNGWQFFS-PAMNEMVK 539
Query 433 SQSKLINDLYKAVEEQQFVLFYQAK-YAANLNICGVEALIRWQHPTFGLLSPHMFIDGAE 491
+ L L +A+ Q L YQ + +A + G+EAL RW P G + P FI AE
Sbjct 540 ERLVLGAALKEAISNNQLKLVYQPQIFAETGELYGIEALARWHDPLHGHVPPSRFIPLAE 599
Query 492 KTGLIIPMGYWALEQACKQIQIWEATQTVLYPIAVNLSAIQFENKHLVGTLEKLIRKYQI 551
+ G I +G W + +AC+Q+ W + + ++VNLSA+ F + L + + + I
Sbjct 600 EIGEIENIGRWVIAEACRQLAEWRSQNIHIPALSVNLSALHFRSNQLPNQVSDAMHAWGI 659
Query 552 RPNHLIIEITESTAMRHIDSSIATFEQMRALGIQIAIDDFGTGHSSFLYLKDLPVDELKI 611
+ L +EITES M H + +R +G+ +++DDFGTG S L LPV E+KI
Sbjct 660 DGHQLTVEITESMMMEHDTEIFKRIQILRDMGVGLSVDDFGTGFSGLSRLVSLPVTEIKI 719
Query 612 DRGFIIHLHEGSKEEVILESIIHLATKLGLKVTAEGVETQLQADILIRLGCQQLQGYLLG 671
D+ F+ + +LE+I + L L V AEGVET+ Q ++L ++ C+ +QGY
Sbjct 720 DKSFVDRCLTEKRILALLEAITSIGQSLNLTVVAEGVETKEQFEMLRKIHCRVIQGYFFS 779
Query 672 RPVPVEQL 679
RP+P E++
Sbjct 780 RPLPAEEI 787
>Q9KU26 Biofilm architecture maintenance protein MbaA [Vibrio
cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)]
Length=791
Score = 201 bits (510), Expect = 7e-58
Identities = 131/429 (31%), Positives = 220/429 (51%), Gaps = 15/429 (3%)
Query 261 LAVLDNLTKLPNRLFLMDYVKDRFSKTHQKDEKIAFLYLDLDRFKSVNDAFGHHVGDQLL 320
LA D+LTKL NR + D + I +Y+DLD FK VND +GH +GD LL
Sbjct 338 LAENDHLTKLANR-YQFQVQADLLLSRCYDTQHIWVMYIDLDNFKYVNDKYGHQIGDSLL 396
Query 321 IQVANRIQKHLDD-------HCKLLRIGGDEF-LIIIEKRRTRQIAQI-AEDVLRQVQEA 371
+ A +++ + + R+ GDEF ++++ +R A+I A+ +L +Q
Sbjct 397 VSFATHVRQLCKNFEASHNTYSIAARLSGDEFAILLVSPKRFNDCAKIFAQRLLAPIQNK 456
Query 372 YLITSKEINISASIGIAIYPEHGNNMQDLLINADIAMVMAKDQGRNTYSIFNYTSEHNET 431
I+ASIGIA +P+ G +++ LL+NAD AM AK+ G+N + ++ +
Sbjct 457 DNSPLSHFPITASIGIATFPKDGEHIEKLLLNADTAMYQAKNAGKNQVAYYSQALDQIVQ 516
Query 432 RSQSKLINDLYKAVEEQQFVLFYQAKYAAN-LNICGVEALIRWQHPTFGLLSPHMFIDGA 490
R ++ + L + +Q+F L YQ + + + G E L+RWQ G +SP FI A
Sbjct 517 R-RNNIERALRLGLFDQEFNLAYQPYFTCSGKRLVGFEVLLRWQSELLGEVSPEEFIPIA 575
Query 491 EKTGLIIPMGYWALEQACKQIQIWEATQTVLYPIAVNLSAIQFENKHLVGTLEKLIRKYQ 550
E+TGL + W + +A ++I +A +++NLS+ + + L + + ++
Sbjct 576 EQTGLFGTIDRWVISKAFQEISTLQAIVKEPIQVSINLSSAELNSLKLAQFIHRQAEQFG 635
Query 551 IRPNHLIIEITESTAMRHIDSSIATFEQMRALGIQIAIDDFGTGHSSFLYLKDLPVDELK 610
+ P + EITE+ A S ++ LG + IDDFG+G++S L PV ++K
Sbjct 636 VSPAWIDFEITETFAAD--SQSFPLLHELSRLGYGLTIDDFGSGYTSITQLVQYPVQKIK 693
Query 611 IDRGFIIHLHEGSKEEVILESIIHLATKLGLKVTAEGVETQLQADILIRLGCQQLQGYLL 670
DR F+ L +K+ VI +I L +KVTAEG+E++ L C +QG+
Sbjct 694 FDRHFLDTLIATNKQNVI-RPLIDLCHSQSMKVTAEGIESETMHQWLADYECDYMQGFYF 752
Query 671 GRPVPVEQL 679
G P+ + ++
Sbjct 753 GYPMSLSEI 761
Score = 20.8 bits (42), Expect = 4.3
Identities = 9/21 (43%), Positives = 15/21 (71%), Gaps = 1/21 (5%)
Query 276 LMDYVKDRFSKTHQKDEKIAF 296
+M Y+K RF+ T QK+ I++
Sbjct 137 VMAYIKQRFAST-QKNSDISY 156
>Q8EJM6 Cyclic di-GMP phosphodiesterase PdeB [Shewanella oneidensis
(strain MR-1)]
Length=856
Score = 199 bits (507), Expect = 3e-57
Identities = 140/431 (32%), Positives = 227/431 (53%), Gaps = 17/431 (4%)
Query 254 LNRELANLAVLDNLTKLPNRLFLMDYVKDRFSKTHQKDEKIAFLYLDLDRFKSVNDAFGH 313
L +L A D +T L NR + + + S+ +A YLDL++FK +ND+ GH
Sbjct 420 LKHQLQKRANFDGITGLLNRQAFEEQLPEFASQARS----LAVCYLDLEQFKLINDSCGH 475
Query 314 HVGDQLLIQVANRIQKHLDDHCKLLRIGGDEFLIIIEKRRTRQIAQIAEDVLRQVQEAYL 373
GD++L VA IQ L L RIGGDEF ++I R +AQ+ + ++ QV +
Sbjct 476 TAGDRMLAMVARAIQSCLGPQELLARIGGDEFGLVICDRTALAVAQLLKQIIAQVS-LQV 534
Query 374 ITSKEIN--ISASIGIAIYPEHGNNMQDLLINADIAMVMAKDQGRNTYSIFN-YTSEHNE 430
+ K N + SIG+A N Q+LL +ADIA + AK +G N I++ E
Sbjct 535 LHDKNCNYKVGLSIGVAFGRAPYINAQELLKDADIACIAAKAKGTNQIHIYDDKDKELTY 594
Query 431 TRSQSKLINDLYKAVEEQQFVLFYQA--KYAANLNICGVEALIRWQHPTFGLLSPHMFID 488
R+ K + +A+EE + +L+YQ A+ +E L+R Q P +L+P FI
Sbjct 595 QRNAPKWAVRIAQAIEENELLLYYQPIRGLGASSKRQRMEVLLRIQEPCGRILAPAQFIA 654
Query 489 GAEKTGLIIPMGYWALEQACKQIQIWEATQTVLYP---IAVNLSAIQFENKHLVGTLEKL 545
AE+ L+ + ++ ++ +W + + L+ I++NLS + +V + K
Sbjct 655 AAERFKLMPEID----KEVIRKAFLWLSLNSQLWQDHCISINLSGNSLGAEGMVEYIAKQ 710
Query 546 IRKYQIRPNHLIIEITESTAMRHIDSSIATFEQMRALGIQIAIDDFGTGHSSFLYLKDLP 605
+ + I + EITE+TA+++ + Q+R LG A+DDFG+G +S+ YL++LP
Sbjct 711 QQIFDIPSQCVCFEITETTAIQNRHRGMEMLRQLRKLGFSFALDDFGSGFASYGYLRELP 770
Query 606 VDELKIDRGFIIHLHEGSKEEVILESIIHLATKLGLKVTAEGVETQLQADILIRLGCQQL 665
VD +KID F+ +L +K+ I++SI + +G++ AE VE Q D L +G
Sbjct 771 VDYVKIDGCFVKNLAVNAKDYAIVKSIQDVCRVMGIETVAEFVENQEIIDRLQTIGINYA 830
Query 666 QGYLLGRPVPV 676
QGY +GRP P+
Sbjct 831 QGYAIGRPQPL 841
>Q04855 Uncharacterized protein AZC_3085 [Azorhizobium caulinodans
(strain ATCC 43989 / DSM 5975 / JCM 20966 / LMG 6465 /
NBRC 14845 / NCIMB 13405 / ORS 571)]
Length=735
Score = 172 bits (435), Expect = 4e-48
Identities = 125/425 (29%), Positives = 207/425 (49%), Gaps = 18/425 (4%)
Query 256 RELANLAVLDNLTKLPNRLFLMDYVKDRFSKTHQKDEKIAFLYLDLDRFKSVNDAFGHHV 315
R L LA D T L NR L+ R ++ + + DL K+ +FG
Sbjct 309 RALERLAFTDMHTGLSNRTGLLRLCTGRPTRP---SGAVVLMLRDLGVVKT---SFGDDW 362
Query 316 GDQLLIQVANRIQKHLDDHCKLLRIGGDEFLIIIEKRRTRQIAQIAEDVLRQVQEAYLIT 375
+ ++++ AN + + L L R G EF ++ + A++AE ++ +++ A
Sbjct 363 AEPMIVETANLLSRMLPQEACLGRTGESEFTVVTWQPGAA--AELAETLIGRLRSAIESG 420
Query 376 SKEINISASIGIAIYPEHGNNMQDLLINADIAMVMAKDQGRNTYSIFNYTSEHNETRSQS 435
+ + +G+ E + LL +A++A +D G + + ++H +
Sbjct 421 GRRFYLRVGLGVV---ERPGDATYLLRDAEMAARDCRD-GHLLHFAEHMRAQHQQRLELE 476
Query 436 KLINDLYKAVEEQQFVLFYQAKYAANLN-ICGVEALIRWQHPTFGLLSPHMFIDGAEKTG 494
+ D+ + L YQ +A + G EAL+RW T G +SP +F+ AE G
Sbjct 477 MALRDVIQR-RTSALSLHYQPVVSARTGGLVGFEALVRWYSETHGPVSPALFVPLAEAGG 535
Query 495 LIIPMGYWALEQACKQIQIWEATQTV--LYP--IAVNLSAIQFENKHLVGTLEKLIRKYQ 550
+G W +E A W + L P IA+NLSA + L+ + + + +
Sbjct 536 FAERLGAWVIETAISACAGWNVRRRAHGLAPWHIAINLSATEVVAPDLIERVRQTMAFHG 595
Query 551 IRPNHLIIEITESTAMRHIDSSIATFEQMRALGIQIAIDDFGTGHSSFLYLKDLPVDELK 610
+ P + E+TES + + +I T ++RALG AIDDFGTG+SS YL+ LP+D LK
Sbjct 596 LPPQCVCFELTESAILNQPEIAIETLSRLRALGCTTAIDDFGTGYSSLSYLQRLPMDVLK 655
Query 611 IDRGFIIHLHEGSKEEVILESIIHLATKLGLKVTAEGVETQLQADILIRLGCQQLQGYLL 670
IDR F++ + + S+ I+ +I +A LG+ V AEGVET IL ++GC + QG+L
Sbjct 656 IDRSFVLDMVDNSRSREIVRVMIEMAHGLGMSVVAEGVETTGALQILRQMGCDRAQGFLF 715
Query 671 GRPVP 675
GR +P
Sbjct 716 GRAMP 720
>P76446 Probable cyclic di-GMP phosphodiesterase PdeN [Escherichia
coli (strain K12)]
Length=518
Score = 140 bits (352), Expect = 3e-38
Identities = 76/243 (31%), Positives = 132/243 (54%), Gaps = 2/243 (1%)
Query 440 DLYKAVEEQQFVLFYQAKYAAN-LNICGVEALIRWQHPTFGLLSPHMFIDGAEKTGLIIP 498
++ A++ +QF + YQ L + G+E L+RW+HP G + P FI+ AE +I+P
Sbjct 267 EIMTAIKREQFYVAYQPVVDTQALRVTGLEVLLRWRHPVAGEIPPDAFINFAESQKMIVP 326
Query 499 MGYWALEQACKQIQIWEATQTVLYPIAVNLSAIQFENKHLVGTLEKLIRKYQIRPNHLII 558
+ E + E V +N++ ++ ++KL+ +++
Sbjct 327 LTQHLFELIARDAAELEKVLPVGVKFGINIAPDHLHSESFKADIQKLLTSLPAHHFQIVL 386
Query 559 EITESTAMRHIDSSIATFEQMRALGIQIAIDDFGTGHSSFLYLKDLPVDELKIDRGFIIH 618
EITE ++ +++ F + ++G++IAIDDFGTGHS+ +YL+ +D LKIDRGFI
Sbjct 387 EITERDMLKEQEAT-QLFAWLHSVGVEIAIDDFGTGHSALIYLERFTLDYLKIDRGFINA 445
Query 619 LHEGSKEEVILESIIHLATKLGLKVTAEGVETQLQADILIRLGCQQLQGYLLGRPVPVEQ 678
+ + +L++++ LA +L + AEGVET QA L G +QGY + RP+P++
Sbjct 446 IGTETITSPVLDAVLTLAKRLNMLTVAEGVETPEQARWLSERGVNFMQGYWISRPLPLDD 505
Query 679 LVQ 681
V+
Sbjct 506 FVR 508
>P23842 Probable cyclic di-GMP phosphodiesterase PdeA [Escherichia
coli (strain K12)]
Length=729
Score = 138 bits (347), Expect = 7e-37
Identities = 120/461 (26%), Positives = 213/461 (46%), Gaps = 27/461 (6%)
Query 221 FTMIFITSLVLVAGYCIAVLEFRLEERNKALLKLNRELANLAVLDNLTKLPNRLFLMDYV 280
+++ FI ++++ C+ + R+ R++ L NR A+ D LT LPN L
Sbjct 289 YSLAFILAVLISFSVCLLYM-VRIYHRSEWL---NRRWHLQALTDPLTLLPNFRALEQAP 344
Query 281 KDRFSKTHQKDEKIAFLYLDLDRFKSVNDAFGHHVGDQLLIQVANRIQKHLDDHCKLLRI 340
+ K+ F L +D + ++ +G + + + + + ++ KL ++
Sbjct 345 EQEAGKS--------FCCLRIDNLEFMSRHYGLMMRVHCIRSICRTLLPLMQENEKLYQL 396
Query 341 GGDEFLIIIEKRRTRQIAQIAEDVLRQVQEAYLITSKEINISASIGIAIYPEHGNNMQDL 400
G E L+++ T Q ++L Q + T ++ A+ G + + +Q L
Sbjct 397 PGSELLLVLSGPETEGRLQHMVNILNSRQIHWNNTGLDMGYGAAWGR--FDGNQETLQPL 454
Query 401 LINADIAMVMAKDQGRNTYSIFNYTSE--HNETRSQSKLINDLYKAVEEQQFVLFYQAKY 458
L ++ + + + + E +T Q L+N + A+++ +L+ Q
Sbjct 455 L--GQLSWLAEQSCAHHHVLALDSREEMVSGQTTKQVLLLNTIRTALDQGDLLLYAQP-- 510
Query 459 AANLNICGVEALIRWQHPTFGLLSPHMFIDGAEKTGLIIPMGYWALEQACKQIQIWEATQ 518
N G + ++ G+++P F+ + L LE K W AT
Sbjct 511 IRNKEGEGYDEILARLKYDGGIMTPDKFLPLIAQFNLSARFDLQVLESLLK----WLATH 566
Query 519 TVLYP---IAVNLSAIQFENKHLVGTLEKLIRKYQIRPNHLIIEITESTAMRHIDSSIAT 575
+VNL + K++ G + +L ++Y I P +I+EITE A + +SS+
Sbjct 567 PCDKKGPRFSVNLMPLTLLQKNIAGRIIRLFKRYHISPQAVILEITEEQAFSNAESSMYN 626
Query 576 FEQMRALGIQIAIDDFGTGHSSFLYLKDLPVDELKIDRGFIIHLHEGSKEEVILESIIHL 635
EQ+ G +IAIDDFGTG++++ LK L D +KID F+ + + + +I+ SI L
Sbjct 627 IEQLHKFGFRIAIDDFGTGYANYERLKRLQADIIKIDGVFVKDIVTNTLDAMIVRSITDL 686
Query 636 ATKLGLKVTAEGVETQLQADILIRLGCQQLQGYLLGRPVPV 676
A L V AE VETQ Q +L +LG Q LQGYL+GRP P+
Sbjct 687 AKAKSLSVVAEFVETQQQQALLHKLGVQYLQGYLIGRPQPL 727
>P21514 Cyclic di-GMP phosphodiesterase PdeL [Escherichia coli
(strain K12)]
Length=362
Score = 132 bits (333), Expect = 9e-37
Identities = 84/267 (31%), Positives = 134/267 (50%), Gaps = 6/267 (2%)
Query 415 GRNTYSIFNYTSEHNETRSQSKLINDLYKAVEEQQFVLFYQAKYAANLNIC-GVEALIRW 473
G N++ N H+ ++ + A+E +F + Q + A + G E L+RW
Sbjct 92 GSNSHRYINDNHYHHIVTPEA-----ISLALENHEFKPWIQPVFCAQTGVLTGCEVLVRW 146
Query 474 QHPTFGLLSPHMFIDGAEKTGLIIPMGYWALEQACKQIQIWEATQTVLYPIAVNLSAIQF 533
+HP G++ P FI AE +GLI+ M ++Q + + + I +N+SA F
Sbjct 147 EHPQTGIIPPDQFIPLAESSGLIVIMTRQLMKQTADILMPVKHLLPDNFHIGINVSAGCF 206
Query 534 ENKHLVGTLEKLIRKYQIRPNHLIIEITESTAMRHIDSSIATFEQMRALGIQIAIDDFGT 593
L+ K L++E+TE + + A F+ + I A+DDFGT
Sbjct 207 LAAGFEKECLNLVNKLGNDKIKLVLELTERNPIPVTPEARAIFDSLHQHNITFALDDFGT 266
Query 594 GHSSFLYLKDLPVDELKIDRGFIIHLHEGSKEEVILESIIHLATKLGLKVTAEGVETQLQ 653
G++++ YL+ PVD +KID+ F+ I+++I+ LA K GL + AEGVETQ Q
Sbjct 267 GYATYRYLQAFPVDFIKIDKSFVQMASVDEISGHIVDNIVELARKPGLSIVAEGVETQEQ 326
Query 654 ADILIRLGCQQLQGYLLGRPVPVEQLV 680
AD++I G LQGYL PVP + +
Sbjct 327 ADLMIGKGVHFLQGYLYSPPVPGNKFI 353
Lambda K H a alpha
0.327 0.141 0.411 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 7559482
Database: 18712e0f2fa2c3b6e66884426f014d0b.SwissProt.fasta
Posted date: May 20, 2024 11:02 AM
Number of letters in database: 13,196
Number of sequences in database: 18
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
