BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: cd0e553661df4a10a5cac5bff433518c.SwissProt.fasta
           1 sequences; 343 total letters



Query= ACIAD3108

Length=332
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P28630 DNA polymerase III subunit delta [Escherichia coli (strain...  90.9    3e-25


>P28630 DNA polymerase III subunit delta [Escherichia coli (strain 
K12)]
Length=343

 Score = 90.9 bits (224),  Expect = 3e-25
 Identities = 82/301 (27%), Positives = 150/301 (50%), Gaps = 12/301 (4%)

Query  13   DAARGAWIIHGQEPLLEQNLLDAFRKSWQTQEIERQR-YDIGSVSDWKNVFNGLNSLSLF  71
            +  R A+++ G +PLL Q   DA R+    Q  E    + I   +DW  +F+   ++SLF
Sbjct  15   EGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTDWNAIFSLCQAMSLF  74

Query  72   -SQQLAIEVHGNIKPDASGIKQLKSYLQHNEHNLLLVVLPKQDASSLKSSFFQTVEANGV  130
             S+Q  + +     P+A+  +QL +       +LLL+V   + + + +++ + T  AN  
Sbjct  75   ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRS  134

Query  131  IAHLSAQYPQDRQ--RILAQEAEKIGIQLDQDAWTWLMQHHEHNLLAAKNSLMRVSDTFP  188
            +  ++ Q P+  Q  R +A  A+++ ++LD  A   L   +E NLLA   +L R+S  +P
Sbjct  135  V-QVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWP  193

Query  189  EHQLIQIEQLYACLQDQSRYTTYDLSDAMLRGNLAQSVKIFQYLIGAGEPHSLILWTLSK  248
            + +L  + ++   + D + +T +   DA+L G   +++ I Q L   G    ++L TL +
Sbjct  194  DGKL-TLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRLEGSEPVILLRTLQR  252

Query  249  EMRLLMQLFEQ----PQNAL--QLGIWKTKVSDYQQALRRLNPHHFLSWPTLLLRIDSAI  302
            E+ LL+ L  Q    P  AL  +  +W+ +     +AL RL+         LL R +  +
Sbjct  253  ELLLLVNLKRQSAHTPLRALFDKHRVWQNRRGMMGEALNRLSQTQLRQAVQLLTRTELTL  312

Query  303  K  303
            K
Sbjct  313  K  313



Lambda      K        H        a         alpha
   0.321    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95760


  Database: cd0e553661df4a10a5cac5bff433518c.SwissProt.fasta
    Posted date:  May 31, 2024  3:11 AM
  Number of letters in database: 343
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40