BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 385cf7af278ea097e3980c2969374a03.SwissProt.fasta
15 sequences; 5,777 total letters
Query= Z4625
Length=386
Score E
Sequences producing significant alignments: (Bits) Value
P24180 Multidrug export protein AcrE [Escherichia coli (strain K12)] 743 0.0
P0AE07 Multidrug efflux pump subunit AcrA [Escherichia coli O157:H7] 516 0.0
P0AE06 Multidrug efflux pump subunit AcrA [Escherichia coli (stra... 516 0.0
P52477 Multidrug resistance protein MexA [Pseudomonas aeruginosa ... 367 3e-129
P37636 Multidrug resistance protein MdtE [Escherichia coli (strai... 364 5e-128
Q8CVL1 Multidrug resistance protein MdtE [Escherichia coli O6:H1 ... 364 7e-128
Q8X4L0 Multidrug resistance protein MdtE [Escherichia coli O157:H7] 362 3e-127
Q9WWZ9 Toluene efflux pump periplasmic linker protein TtgA [Pseud... 351 1e-122
Q88N30 Probable efflux pump periplasmic linker TtgA [Pseudomonas ... 350 2e-122
P0C069 Multidrug/solvent efflux pump periplasmic linker protein M... 350 2e-122
Q9KJC3 Antibiotic efflux pump periplasmic linker protein ArpA [Ps... 342 3e-119
O31099 Solvent efflux pump periplasmic linker SrpA [Pseudomonas p... 328 1e-113
Q93PU5 Toluene efflux pump periplasmic linker protein TtgG [Pseud... 328 1e-113
Q9KWV5 Toluene efflux pump periplasmic linker protein TtgD [Pseud... 322 2e-111
Q849Q9 Probable efflux pump periplasmic linker protein SepA [Pseu... 322 2e-111
>P24180 Multidrug export protein AcrE [Escherichia coli (strain
K12)]
Length=385
Score = 743 bits (1918), Expect = 0.0
Identities = 384/385 (99%), Positives = 384/385 (99%), Gaps = 0/385 (0%)
Query 1 MTKHARFFLLPSFILISAALIAGCNDKGEEKAHVGEPQVTVHIVKTAPLEVKTELPGRTN 60
MTKHARFFLLPSFILISAALIAGCNDKGEEKAHVGEPQVTVHIVKTAPLEVKTELPGRTN
Sbjct 1 MTKHARFFLLPSFILISAALIAGCNDKGEEKAHVGEPQVTVHIVKTAPLEVKTELPGRTN 60
Query 61 AYRIAEVRPQVSGIVLNRNFTEGSDVQAGQSLYQIDPATYQANYDSAKGELAKSEAAAAI 120
AYRIAEVRPQVSGIVLNRNFTEGSDVQAGQSLYQIDPATYQANYDSAKGELAKSEAAAAI
Sbjct 61 AYRIAEVRPQVSGIVLNRNFTEGSDVQAGQSLYQIDPATYQANYDSAKGELAKSEAAAAI 120
Query 121 AHLTVKRYVPLVGTKYISQQEYDQAIADARQADAAVIAAKATVESARINLAYTKVTAPIS 180
AHLTVKRYVPLVGTKYISQQEYDQAIADARQADAAVIAAKATVESARINLAYTKVTAPIS
Sbjct 121 AHLTVKRYVPLVGTKYISQQEYDQAIADARQADAAVIAAKATVESARINLAYTKVTAPIS 180
Query 181 GRIGKSTVTEGALVTNGQTTELATVQQLDPIYVDVTQSSNDFMRLKQSVEQGNLHKENAT 240
GRIGKSTVTEGALVTNGQTTELATVQQLDPIYVDVTQSSNDFMRLKQSVEQGNLHKENAT
Sbjct 181 GRIGKSTVTEGALVTNGQTTELATVQQLDPIYVDVTQSSNDFMRLKQSVEQGNLHKENAT 240
Query 241 SNVELVMENGQTYPLKGTLQFSDVTVDESTGSITLRAVFPNPQHTLLPGMFVRARIDEGV 300
SNVELVMENGQTYPLKGTLQFSDVTVDESTGSITLRAVFPNPQHTLLPGMFVRARIDEGV
Sbjct 241 SNVELVMENGQTYPLKGTLQFSDVTVDESTGSITLRAVFPNPQHTLLPGMFVRARIDEGV 300
Query 301 QPDAILIPQQGVSRTPRGDATVLIVNDKSQVEVRPVVASQAIGDKWLISEGLKSGDQVIV 360
QPDAILIPQQGVSRTPRGDATVLIVNDKSQVE RPVVASQAIGDKWLISEGLKSGDQVIV
Sbjct 301 QPDAILIPQQGVSRTPRGDATVLIVNDKSQVEARPVVASQAIGDKWLISEGLKSGDQVIV 360
Query 361 SGLQKARPGEQVKATTDTPADTASK 385
SGLQKARPGEQVKATTDTPADTASK
Sbjct 361 SGLQKARPGEQVKATTDTPADTASK 385
>P0AE07 Multidrug efflux pump subunit AcrA [Escherichia coli O157:H7]
Length=397
Score = 516 bits (1328), Expect = 0.0
Identities = 264/388 (68%), Positives = 316/388 (81%), Gaps = 4/388 (1%)
Query 1 MTKHARFFLLPSFILISAAL-IAGCNDKGEEKAHVGEPQVTVHIVKTAPLEVKTELPGRT 59
M K+ F L +++S +L + GC+DK ++ P V V VKT PL++ TELPGRT
Sbjct 1 MNKNRGFTPLAVVLMLSGSLALTGCDDKQAQQGGQQMPAVGVVTVKTEPLQITTELPGRT 60
Query 60 NAYRIAEVRPQVSGIVLNRNFTEGSDVQAGQSLYQIDPATYQANYDSAKGELAKSEAAAA 119
+AYRIAEVRPQVSGI+L RNF EGSD++AG SLYQIDPATYQA YDSAKG+LAK++AAA
Sbjct 61 SAYRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAAN 120
Query 120 IAHLTVKRYVPLVGTKYISQQEYDQAIADARQADAAVIAAKATVESARINLAYTKVTAPI 179
IA LTV RY L+GT+YIS+QEYDQA+ADA+QA+AAV AAKA VE+ARINLAYTKVT+PI
Sbjct 121 IAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPI 180
Query 180 SGRIGKSTVTEGALVTNGQTTELATVQQLDPIYVDVTQSSNDFMRLKQSVEQGNLHKENA 239
SGRIGKS VTEGALV NGQ T LATVQQLDPIYVDVTQSSNDF+RLKQ + G L +EN
Sbjct 181 SGRIGKSNVTEGALVQNGQATALATVQQLDPIYVDVTQSSNDFLRLKQELANGTLKQENG 240
Query 240 TSNVELVMENGQTYPLKGTLQFSDVTVDESTGSITLRAVFPNPQHTLLPGMFVRARIDEG 299
+ V L+ +G +P GTL+FSDVTVD++TGSITLRA+FPNP HTLLPGMFVRAR++EG
Sbjct 241 KAKVSLITSDGIKFPQDGTLEFSDVTVDQTTGSITLRAIFPNPDHTLLPGMFVRARLEEG 300
Query 300 VQPDAILIPQQGVSRTPRGDATVLIVNDKSQVEVRPVVASQAIGDKWLISEGLKSGDQVI 359
+ P+AIL+PQQGV+RTPRGDATVL+V +VE RP+VASQAIGDKWL++EGLK+GD+V+
Sbjct 301 LNPNAILVPQQGVTRTPRGDATVLVVGADDKVETRPIVASQAIGDKWLVTEGLKAGDRVV 360
Query 360 VSGLQKARPGEQVKA---TTDTPADTAS 384
+SGLQK RPG QVKA T D AS
Sbjct 361 ISGLQKVRPGVQVKAQEVTADNNQQAAS 388
>P0AE06 Multidrug efflux pump subunit AcrA [Escherichia coli (strain
K12)]
Length=397
Score = 516 bits (1328), Expect = 0.0
Identities = 264/388 (68%), Positives = 316/388 (81%), Gaps = 4/388 (1%)
Query 1 MTKHARFFLLPSFILISAAL-IAGCNDKGEEKAHVGEPQVTVHIVKTAPLEVKTELPGRT 59
M K+ F L +++S +L + GC+DK ++ P V V VKT PL++ TELPGRT
Sbjct 1 MNKNRGFTPLAVVLMLSGSLALTGCDDKQAQQGGQQMPAVGVVTVKTEPLQITTELPGRT 60
Query 60 NAYRIAEVRPQVSGIVLNRNFTEGSDVQAGQSLYQIDPATYQANYDSAKGELAKSEAAAA 119
+AYRIAEVRPQVSGI+L RNF EGSD++AG SLYQIDPATYQA YDSAKG+LAK++AAA
Sbjct 61 SAYRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAAN 120
Query 120 IAHLTVKRYVPLVGTKYISQQEYDQAIADARQADAAVIAAKATVESARINLAYTKVTAPI 179
IA LTV RY L+GT+YIS+QEYDQA+ADA+QA+AAV AAKA VE+ARINLAYTKVT+PI
Sbjct 121 IAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPI 180
Query 180 SGRIGKSTVTEGALVTNGQTTELATVQQLDPIYVDVTQSSNDFMRLKQSVEQGNLHKENA 239
SGRIGKS VTEGALV NGQ T LATVQQLDPIYVDVTQSSNDF+RLKQ + G L +EN
Sbjct 181 SGRIGKSNVTEGALVQNGQATALATVQQLDPIYVDVTQSSNDFLRLKQELANGTLKQENG 240
Query 240 TSNVELVMENGQTYPLKGTLQFSDVTVDESTGSITLRAVFPNPQHTLLPGMFVRARIDEG 299
+ V L+ +G +P GTL+FSDVTVD++TGSITLRA+FPNP HTLLPGMFVRAR++EG
Sbjct 241 KAKVSLITSDGIKFPQDGTLEFSDVTVDQTTGSITLRAIFPNPDHTLLPGMFVRARLEEG 300
Query 300 VQPDAILIPQQGVSRTPRGDATVLIVNDKSQVEVRPVVASQAIGDKWLISEGLKSGDQVI 359
+ P+AIL+PQQGV+RTPRGDATVL+V +VE RP+VASQAIGDKWL++EGLK+GD+V+
Sbjct 301 LNPNAILVPQQGVTRTPRGDATVLVVGADDKVETRPIVASQAIGDKWLVTEGLKAGDRVV 360
Query 360 VSGLQKARPGEQVKA---TTDTPADTAS 384
+SGLQK RPG QVKA T D AS
Sbjct 361 ISGLQKVRPGVQVKAQEVTADNNQQAAS 388
>P52477 Multidrug resistance protein MexA [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847
/ LMG 12228 / 1C / PRS 101 / PAO1)]
Length=383
Score = 367 bits (943), Expect = 3e-129
Identities = 197/379 (52%), Positives = 267/379 (70%), Gaps = 19/379 (5%)
Query 9 LLPSFILISAALIAGCNDKGEEKAHVGEPQVTVHIVKTAPLEVKTELPGRTNAYRIAEVR 68
L+P+ +L++ + ++GC K E P+V + ++ + + TELPGRTNA+RIAEVR
Sbjct 10 LVPA-LLVAISALSGCG-KSEAPPPAQTPEVGIVTLEAQTVTLNTELPGRTNAFRIAEVR 67
Query 69 PQVSGIVLNRNFTEGSDVQAGQSLYQIDPATYQANYDSAKGELAKSEAAAAIAHLTVKRY 128
PQV+GI+L R F EGSDV+AGQ LYQIDPATY+A+Y SA+ LA ++ A +RY
Sbjct 68 PQVNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQA-------QRY 120
Query 129 VPLVGTKYISQQEYDQAIADARQADAAVIAAKATVESARINLAYTKVTAPISGRIGKSTV 188
LV + +S+Q+Y A+AA + +KA VE ARINL YTKV +PISGRIG+S V
Sbjct 121 KLLVADQAVSKQQY-------ADANAAYLQSKAAVEQARINLRYTKVLSPISGRIGRSAV 173
Query 189 TEGALVTNGQTTELATVQQLDPIYVDVTQSSNDFMRLKQSVEQGNLHK--ENATSNVELV 246
TEGALVTNGQ +ATVQQLDPIYVDVTQ S +RL++ + G L + +NA + V L
Sbjct 174 TEGALVTNGQANAMATVQQLDPIYVDVTQPSTALLRLRRELASGQLERAGDNA-AKVSLK 232
Query 247 MENGQTYPLKGTLQFSDVTVDESTGSITLRAVFPNPQHTLLPGMFVRARIDEGVQPDAIL 306
+E+G YPL+G L+FS+V+VDE TGS+T+RAVFPNP + LLPGMFV A++ EGV+ AIL
Sbjct 233 LEDGSQYPLEGRLEFSEVSVDEGTGSVTIRAVFPNPNNELLPGMFVHAQLQEGVKQKAIL 292
Query 307 IPQQGVSRTPRGDATVLIVNDKSQVEVRPVVASQAIGDKWLISEGLKSGDQVIVSGLQKA 366
PQQGV+R +G AT L+VN +++VE+R + A + IGDKWL++EGL +GD++I GLQ
Sbjct 293 APQQGVTRDLKGQATALVVNAQNKVELRVIKADRVIGDKWLVTEGLNAGDKIITEGLQFV 352
Query 367 RPGEQVKATTDTPADTASK 385
+PG +VK +A K
Sbjct 353 QPGVEVKTVPAKNVASAQK 371
>P37636 Multidrug resistance protein MdtE [Escherichia coli (strain
K12)]
Length=385
Score = 364 bits (935), Expect = 5e-128
Identities = 189/382 (49%), Positives = 259/382 (68%), Gaps = 4/382 (1%)
Query 6 RFFLLPSFILISAALIAGCNDKGEEKAHVGEPQVTVHIVKTAPLEVKTELPGRTNAYRIA 65
R L+P +L A++ C+DK E A P+V V + + V +ELPGRT Y +A
Sbjct 5 RKLLIP--LLFCGAMLTACDDKSAENAAAMTPEVGVVTLSPGSVNVLSELPGRTVPYEVA 62
Query 66 EVRPQVSGIVLNRNFTEGSDVQAGQSLYQIDPATYQANYDSAKGELAKSEAAAAIAHLTV 125
E+RPQV GI++ RNF EG V G SLYQIDPA QA +SAKG LAK+ + A+ A +T
Sbjct 63 EIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITF 122
Query 126 KRYVPLVGTKYISQQEYDQAIADARQADAAVIAAKATVESARINLAYTKVTAPISGRIGK 185
R L+ T Y+S+Q+YD A +A+A V AKA VE A INL Y VT+PI+G GK
Sbjct 123 NRQASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGK 182
Query 186 STVTEGALVTNGQTTELATVQQLDPIYVDVTQSSNDFMRLKQSVEQGNLHKENATSNVEL 245
S+VT GALVT Q L TVQ+LDPIYVD+TQS DF+R+K+ V G + + ++ V+L
Sbjct 183 SSVTVGALVTANQADSLVTVQRLDPIYVDLTQSVQDFLRMKEEVASGQIKQVQGSTPVQL 242
Query 246 VMENGQTYPLKGTLQFSDVTVDESTGSITLRAVFPNPQHTLLPGMFVRARIDEGVQPDAI 305
+ENG+ Y GTL+FSD TVDE+TGS+TLRA+FPNP LLPGM+V A +DEG + + +
Sbjct 243 NLENGKRYSQTGTLKFSDPTVDETTGSVTLRAIFPNPNGDLLPGMYVTALVDEGSRQNVL 302
Query 306 LIPQQGVSRTPRGDATVLIVNDKSQVEVRPVVASQAIGDKWLISEGLKSGDQVIVSGLQK 365
L+PQ+GV+ +G AT LI++ V++R + AS+AIGD+W+++ GL++GD+VIVSGLQ+
Sbjct 303 LVPQEGVTHNAQGKATALILDKDDVVQLREIEASKAIGDQWVVTSGLQAGDRVIVSGLQR 362
Query 366 ARPGEQVKATTDTP--ADTASK 385
RPG + +A + + A T SK
Sbjct 363 IRPGIKARAISSSQENASTESK 384
>Q8CVL1 Multidrug resistance protein MdtE [Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC)]
Length=385
Score = 364 bits (934), Expect = 7e-128
Identities = 189/382 (49%), Positives = 259/382 (68%), Gaps = 4/382 (1%)
Query 6 RFFLLPSFILISAALIAGCNDKGEEKAHVGEPQVTVHIVKTAPLEVKTELPGRTNAYRIA 65
R L+P +L A++ C+DK E A P+V V + + V +ELPGRT Y +A
Sbjct 5 RKLLIP--LLFCGAMLTACDDKSAENAAAMTPEVGVVTLSPGSVNVLSELPGRTVPYEVA 62
Query 66 EVRPQVSGIVLNRNFTEGSDVQAGQSLYQIDPATYQANYDSAKGELAKSEAAAAIAHLTV 125
E+RPQV GI++ RNF EG V G SLYQIDPA QA +SAKG LAK+ + A+ A +T
Sbjct 63 EIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITF 122
Query 126 KRYVPLVGTKYISQQEYDQAIADARQADAAVIAAKATVESARINLAYTKVTAPISGRIGK 185
R L+ T Y+S+Q+YD A +A+A V AKA VE A INL Y VT+PI+G GK
Sbjct 123 NRQASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGK 182
Query 186 STVTEGALVTNGQTTELATVQQLDPIYVDVTQSSNDFMRLKQSVEQGNLHKENATSNVEL 245
S+VT GALVT Q L TVQ+LDPIYVD+TQS DF+R+K+ V G + + ++ V+L
Sbjct 183 SSVTVGALVTANQADSLVTVQRLDPIYVDLTQSVQDFLRMKEEVASGQIKQVQGSTPVQL 242
Query 246 VMENGQTYPLKGTLQFSDVTVDESTGSITLRAVFPNPQHTLLPGMFVRARIDEGVQPDAI 305
+ENG+ Y GTL+FSD TVDE+TGS+TLRA+FPNP LLPGM+V A +DEG + + +
Sbjct 243 NLENGKRYGQTGTLKFSDPTVDETTGSVTLRAIFPNPNGDLLPGMYVTALVDEGSRQNVL 302
Query 306 LIPQQGVSRTPRGDATVLIVNDKSQVEVRPVVASQAIGDKWLISEGLKSGDQVIVSGLQK 365
L+PQ+GV+ +G AT LI++ V++R + AS+AIGD+W+++ GL++GD+VIVSGLQ+
Sbjct 303 LVPQEGVTHNAQGKATALILDKDDVVQLREIEASKAIGDQWVVTSGLQAGDRVIVSGLQR 362
Query 366 ARPGEQVKATTDTP--ADTASK 385
RPG + +A + + A T SK
Sbjct 363 IRPGIKARAISSSQENASTESK 384
>Q8X4L0 Multidrug resistance protein MdtE [Escherichia coli O157:H7]
Length=385
Score = 362 bits (930), Expect = 3e-127
Identities = 188/382 (49%), Positives = 258/382 (68%), Gaps = 4/382 (1%)
Query 6 RFFLLPSFILISAALIAGCNDKGEEKAHVGEPQVTVHIVKTAPLEVKTELPGRTNAYRIA 65
R L+P +L A++ C+DK E P+V V + + V +ELPGRT Y +A
Sbjct 5 RKLLIP--LLFCGAMLTACDDKSAENTAAMTPEVGVVTLSPGSVNVLSELPGRTVPYEVA 62
Query 66 EVRPQVSGIVLNRNFTEGSDVQAGQSLYQIDPATYQANYDSAKGELAKSEAAAAIAHLTV 125
E+RPQV GI++ RNF EG V G SLYQIDPA QA +SAKG LAK+ + A+ A +T
Sbjct 63 EIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITF 122
Query 126 KRYVPLVGTKYISQQEYDQAIADARQADAAVIAAKATVESARINLAYTKVTAPISGRIGK 185
R L+ T Y+S+Q+YD A +A+A V AKA VE A INL Y VT+PI+G GK
Sbjct 123 NRQASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGK 182
Query 186 STVTEGALVTNGQTTELATVQQLDPIYVDVTQSSNDFMRLKQSVEQGNLHKENATSNVEL 245
S+VT GALVT Q L TVQ+LDPIYVD+TQS DF+R+K+ V G + + ++ V+L
Sbjct 183 SSVTVGALVTANQADSLVTVQRLDPIYVDLTQSVQDFLRMKEEVASGQIKQVQGSTPVQL 242
Query 246 VMENGQTYPLKGTLQFSDVTVDESTGSITLRAVFPNPQHTLLPGMFVRARIDEGVQPDAI 305
+ENG+ Y GTL+FSD TVDE+TGS+TLRA+FPNP LLPGM+V A +DEG + + +
Sbjct 243 NLENGKRYSQTGTLKFSDPTVDETTGSVTLRAIFPNPNGDLLPGMYVTALVDEGSRQNVL 302
Query 306 LIPQQGVSRTPRGDATVLIVNDKSQVEVRPVVASQAIGDKWLISEGLKSGDQVIVSGLQK 365
L+PQ+GV+ +G AT LI++ V++R + AS+AIGD+W+++ GL++GD+VIVSGLQ+
Sbjct 303 LVPQEGVTHNAQGKATALILDKDDVVKLREIEASKAIGDQWVVTSGLQAGDRVIVSGLQR 362
Query 366 ARPGEQVKATTDTP--ADTASK 385
RPG + +A + + A T SK
Sbjct 363 IRPGIKARAISSSQENASTESK 384
>Q9WWZ9 Toluene efflux pump periplasmic linker protein TtgA [Pseudomonas
putida (strain DOT-T1E)]
Length=384
Score = 351 bits (900), Expect = 1e-122
Identities = 188/363 (52%), Positives = 256/363 (71%), Gaps = 18/363 (5%)
Query 18 AALIAGCNDKGEEKAHVGE-PQVTVHIVKTAPLEVKTELPGRTNAYRIAEVRPQVSGIVL 76
A L++GC K EE A + PQV V ++ + +ELPGRT+AYR+AEVRPQV+GI+L
Sbjct 17 ATLLSGC--KKEEAAPAAQAPQVGVVTIQPQAFTLTSELPGRTSAYRVAEVRPQVNGIIL 74
Query 77 NRNFTEGSDVQAGQSLYQIDPATYQANYDSAKGELAKSEAAAAIAHLTVKRYVPLVGTKY 136
R F EGS+V+ GQ LYQIDPA Y+A +AK L + + A +RY L+ +
Sbjct 75 KRLFKEGSEVKEGQQLYQIDPAVYEATLANAKANLLATRSLA-------ERYKQLIDEQA 127
Query 137 ISQQEYDQAIADARQADAAVIAAKATVESARINLAYTKVTAPISGRIGKSTVTEGALVTN 196
+S+QEYD A A QA+A++ +SA+I+L YTKV APISGRIG+S+ TEGALV+N
Sbjct 128 VSKQEYDDANAKRLQAEASL-------KSAQIDLRYTKVLAPISGRIGRSSFTEGALVSN 180
Query 197 GQTTELATVQQLDPIYVDVTQSSNDFMRLKQSVEQGNLHKE-NATSNVELVMENGQTYPL 255
GQT +AT+QQLDPIYVDVTQS+ + ++L++ +E G L K N ++V+LV+E+G +
Sbjct 181 GQTDAMATIQQLDPIYVDVTQSTAELLKLRRDLESGQLQKAGNNAASVQLVLEDGSLFKQ 240
Query 256 KGTLQFSDVTVDESTGSITLRAVFPNPQHTLLPGMFVRARIDEGVQPDAILIPQQGVSRT 315
+G L+FS+V VDE+TGS+TLRA+FPNP HTLLPGMFV AR+ GV +AIL PQQGV+R
Sbjct 241 EGRLEFSEVAVDETTGSVTLRALFPNPDHTLLPGMFVHARLKAGVNANAILAPQQGVTRD 300
Query 316 PRGDATVLIVNDKSQVEVRPVVASQAIGDKWLISEGLKSGDQVIVSGLQKARPGEQVKAT 375
+G T L+VN +++VE+R + AS+ +G WLI EGL GD++I GLQ RPG +VK +
Sbjct 301 LKGAPTALVVNQENKVELRQLKASRTLGSDWLIEEGLNPGDRLITEGLQYVRPGVEVKVS 360
Query 376 TDT 378
T
Sbjct 361 DAT 363
>Q88N30 Probable efflux pump periplasmic linker TtgA [Pseudomonas
putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB
11950 / KT2440)]
Length=384
Score = 350 bits (898), Expect = 2e-122
Identities = 190/364 (52%), Positives = 257/364 (71%), Gaps = 20/364 (5%)
Query 18 AALIAGCNDKGEEKAHVGE-PQVTVHIVKTAPLEVKTELPGRTNAYRIAEVRPQVSGIVL 76
A L++GC K EE A + PQV V ++ + +ELPGRT+AYR+AEVRPQV+GI+L
Sbjct 17 ATLLSGC--KKEEAAPAAQAPQVGVVTIQPQAFTLTSELPGRTSAYRVAEVRPQVNGIIL 74
Query 77 NRNFTEGSDVQAGQSLYQIDPATYQANYDSAKGELAKSEAAAAIAHLTVKRYVPLVGTKY 136
R F EGS+V+ GQ LYQIDPA Y+A +AK L + + A +RY L+ +
Sbjct 75 KRLFKEGSEVKEGQQLYQIDPAVYEATLANAKANLLATRSLA-------ERYKQLIDEQA 127
Query 137 ISQQEYDQAIADARQADAAVIAAKATVESARINLAYTKVTAPISGRIGKSTVTEGALVTN 196
+S+QEYD A A QA+A++ +SA+I+L YTKV APISGRIG+S+ TEGALV+N
Sbjct 128 VSKQEYDDANAKRLQAEASL-------KSAQIDLRYTKVLAPISGRIGRSSFTEGALVSN 180
Query 197 GQTTELATVQQLDPIYVDVTQSSNDFMRLKQSVEQGNLHK--ENATSNVELVMENGQTYP 254
GQT +AT+QQLDPIYVDVTQS+ + ++L++ +E G L K +NA S V+LV+E+G +
Sbjct 181 GQTDAMATIQQLDPIYVDVTQSTAELLKLRRDLESGQLQKAGDNAAS-VQLVLEDGSLFK 239
Query 255 LKGTLQFSDVTVDESTGSITLRAVFPNPQHTLLPGMFVRARIDEGVQPDAILIPQQGVSR 314
+G L+FS+V VDE+TGS+TLRA+FPNP HTLLPGMFV AR+ GV +AIL PQQGV+R
Sbjct 240 QEGRLEFSEVAVDETTGSVTLRALFPNPDHTLLPGMFVHARLKAGVNANAILAPQQGVTR 299
Query 315 TPRGDATVLIVNDKSQVEVRPVVASQAIGDKWLISEGLKSGDQVIVSGLQKARPGEQVKA 374
+G T L+VN +++VE+R + AS+ +G WLI EGL GD++I GLQ RPG +VK
Sbjct 300 DLKGAPTALVVNQENKVELRQLKASRTLGSDWLIEEGLNPGDRLITEGLQYVRPGVEVKV 359
Query 375 TTDT 378
+ T
Sbjct 360 SDAT 363
>P0C069 Multidrug/solvent efflux pump periplasmic linker protein
MepA [Pseudomonas putida]
Length=384
Score = 350 bits (898), Expect = 2e-122
Identities = 190/364 (52%), Positives = 257/364 (71%), Gaps = 20/364 (5%)
Query 18 AALIAGCNDKGEEKAHVGE-PQVTVHIVKTAPLEVKTELPGRTNAYRIAEVRPQVSGIVL 76
A L++GC K EE A + PQV V ++ + +ELPGRT+AYR+AEVRPQV+GI+L
Sbjct 17 ATLLSGC--KKEEAAPAAQAPQVGVVTIQPQAFTLTSELPGRTSAYRVAEVRPQVNGIIL 74
Query 77 NRNFTEGSDVQAGQSLYQIDPATYQANYDSAKGELAKSEAAAAIAHLTVKRYVPLVGTKY 136
R F EGS+V+ GQ LYQIDPA Y+A +AK L + + A +RY L+ +
Sbjct 75 KRLFKEGSEVKEGQQLYQIDPAVYEATLANAKANLLATRSLA-------ERYKQLIDEQA 127
Query 137 ISQQEYDQAIADARQADAAVIAAKATVESARINLAYTKVTAPISGRIGKSTVTEGALVTN 196
+S+QEYD A A QA+A++ +SA+I+L YTKV APISGRIG+S+ TEGALV+N
Sbjct 128 VSKQEYDDANAKRLQAEASL-------KSAQIDLRYTKVLAPISGRIGRSSFTEGALVSN 180
Query 197 GQTTELATVQQLDPIYVDVTQSSNDFMRLKQSVEQGNLHK--ENATSNVELVMENGQTYP 254
GQT +AT+QQLDPIYVDVTQS+ + ++L++ +E G L K +NA S V+LV+E+G +
Sbjct 181 GQTDAMATIQQLDPIYVDVTQSTAELLKLRRDLESGQLQKAGDNAAS-VQLVLEDGSLFK 239
Query 255 LKGTLQFSDVTVDESTGSITLRAVFPNPQHTLLPGMFVRARIDEGVQPDAILIPQQGVSR 314
+G L+FS+V VDE+TGS+TLRA+FPNP HTLLPGMFV AR+ GV +AIL PQQGV+R
Sbjct 240 QEGRLEFSEVAVDETTGSVTLRALFPNPDHTLLPGMFVHARLKAGVNANAILAPQQGVTR 299
Query 315 TPRGDATVLIVNDKSQVEVRPVVASQAIGDKWLISEGLKSGDQVIVSGLQKARPGEQVKA 374
+G T L+VN +++VE+R + AS+ +G WLI EGL GD++I GLQ RPG +VK
Sbjct 300 DLKGAPTALVVNQENKVELRQLKASRTLGSDWLIEEGLNPGDRLITEGLQYVRPGVEVKV 359
Query 375 TTDT 378
+ T
Sbjct 360 SDAT 363
>Q9KJC3 Antibiotic efflux pump periplasmic linker protein ArpA
[Pseudomonas putida]
Length=371
Score = 342 bits (876), Expect = 3e-119
Identities = 183/353 (52%), Positives = 249/353 (71%), Gaps = 18/353 (5%)
Query 18 AALIAGCNDKGEEKAHVGE-PQVTVHIVKTAPLEVKTELPGRTNAYRIAEVRPQVSGIVL 76
A L++GC K EE A + PQV V ++ + +ELPGRT+AYR+AEVRPQV+GI+L
Sbjct 17 ATLLSGC--KKEEAAPAAQAPQVGVVTIQPQAFTLTSELPGRTSAYRVAEVRPQVNGIIL 74
Query 77 NRNFTEGSDVQAGQSLYQIDPATYQANYDSAKGELAKSEAAAAIAHLTVKRYVPLVGTKY 136
R F EGS+V+ GQ LYQIDPA Y+A +AK L + + A +RY L+ +
Sbjct 75 KRLFKEGSEVKEGQQLYQIDPAVYEATLANAKANLLATRSLA-------ERYKQLIDEQA 127
Query 137 ISQQEYDQAIADARQADAAVIAAKATVESARINLAYTKVTAPISGRIGKSTVTEGALVTN 196
+S+QEYD A A QA+A++ +SA+I+L YTKV APISGRIG+S+ TEGALV+N
Sbjct 128 VSKQEYDDANAKRLQAEASL-------KSAQIDLRYTKVLAPISGRIGRSSFTEGALVSN 180
Query 197 GQTTELATVQQLDPIYVDVTQSSNDFMRLKQSVEQGNLHKE-NATSNVELVMENGQTYPL 255
GQT +AT+QQLDPIYVDVTQS+ + ++L++ +E G L K N ++V+LV+E+G +
Sbjct 181 GQTDAMATIQQLDPIYVDVTQSTAELLKLRRDLESGQLQKAGNNAASVQLVLEDGSLFKQ 240
Query 256 KGTLQFSDVTVDESTGSITLRAVFPNPQHTLLPGMFVRARIDEGVQPDAILIPQQGVSRT 315
+G L+FS+V VDE+TGS+TLRA+FPNP HTLLPGMFV AR+ GV +AIL PQQGV+R
Sbjct 241 EGRLEFSEVAVDETTGSVTLRALFPNPDHTLLPGMFVHARLKAGVNANAILAPQQGVTRD 300
Query 316 PRGDATVLIVNDKSQVEVRPVVASQAIGDKWLISEGLKSGDQVIVSGLQKARP 368
+G T L+VN +++VE+R + AS+ +G WLI EGL GD++I GLQ P
Sbjct 301 LKGAPTALVVNQENKVELRQLKASRTLGSDWLIEEGLNPGDRLITEGLQYVSP 353
>O31099 Solvent efflux pump periplasmic linker SrpA [Pseudomonas
putida]
Length=382
Score = 328 bits (840), Expect = 1e-113
Identities = 175/361 (48%), Positives = 240/361 (66%), Gaps = 15/361 (4%)
Query 15 LISAALIAGCNDKGEEKAHVGEPQVTVHIVKTAPLEVKTELPGRTNAYRIAEVRPQVSGI 74
L + LI+GC +K + + P V V+ V+ L + T+LPGRT+A+R+AEVRPQVSGI
Sbjct 15 LTALMLISGCGEKEQVSSATPPPDVGVYTVRAQALTLTTDLPGRTSAFRVAEVRPQVSGI 74
Query 75 VLNRNFTEGSDVQAGQSLYQIDPATYQANYDSAKGELAKSEAAAAIAHLTVKRYVPLVGT 134
+ R+F EG++V+ GQ LYQIDP TY+A +L ++EA A +RY L+ T
Sbjct 75 LQKRSFVEGAEVKLGQQLYQIDPRTYEA-------QLRRAEANRTSAQNLARRYETLLKT 127
Query 135 KYISQQEYDQAIADARQADAAVIAAKATVESARINLAYTKVTAPISGRIGKSTVTEGALV 194
K +S+Q+YD A+A +QA+A + ARI++ YT+V +PISGRIG+STVTEGALV
Sbjct 128 KAVSKQQYDDALAAWKQAEA-------DYQVARIDVQYTRVLSPISGRIGRSTVTEGALV 180
Query 195 TNGQTTELATVQQLDPIYVDVTQSSNDFMRLKQSVEQGNLHKENAT-SNVELVMENGQTY 253
TNGQ LATV QLDPIYVDVTQ + L++++E G L K + V L +++G Y
Sbjct 181 TNGQAQSLATVTQLDPIYVDVTQPITKLLGLQKALESGRLQKTGENQAEVSLTLDDGSAY 240
Query 254 PLKGTLQFSDVTVDESTGSITLRAVFPNPQHTLLPGMFVRARIDEGVQPDAILIPQQGVS 313
PL GTL+FS+V+VD +TGS+TLRA FPNP LLPGMFV A + EGVQ AIL+PQQ +S
Sbjct 241 PLPGTLKFSEVSVDPTTGSVTLRAEFPNPNRKLLPGMFVHALLKEGVQNAAILVPQQAIS 300
Query 314 RTPRGDATVLIVNDKSQVEVRPVVASQAIGDKWLISEGLKSGDQVIVSGLQKARPGEQVK 373
R RG +V +V + VE R + + +G+ WLIS G+ G+++I G+Q+ R G V
Sbjct 301 RDTRGVPSVWVVKADNTVESREIQTLRTVGNAWLISNGVTEGERIITEGVQRVRSGIAVN 360
Query 374 A 374
A
Sbjct 361 A 361
>Q93PU5 Toluene efflux pump periplasmic linker protein TtgG [Pseudomonas
putida (strain DOT-T1E)]
Length=391
Score = 328 bits (840), Expect = 1e-113
Identities = 175/361 (48%), Positives = 240/361 (66%), Gaps = 15/361 (4%)
Query 15 LISAALIAGCNDKGEEKAHVGEPQVTVHIVKTAPLEVKTELPGRTNAYRIAEVRPQVSGI 74
L + LI+GC +K + + P V V+ V+ L + T+LPGRT+A+R+AEVRPQVSGI
Sbjct 24 LTALMLISGCGEKEQVSSATPPPDVGVYTVRAQALTLTTDLPGRTSAFRVAEVRPQVSGI 83
Query 75 VLNRNFTEGSDVQAGQSLYQIDPATYQANYDSAKGELAKSEAAAAIAHLTVKRYVPLVGT 134
+ R+F EG++V+ GQ LYQIDP TY+A +L ++EA A +RY L+ T
Sbjct 84 LQKRSFVEGAEVKLGQQLYQIDPRTYEA-------QLRRAEANRTSAQNLARRYETLLKT 136
Query 135 KYISQQEYDQAIADARQADAAVIAAKATVESARINLAYTKVTAPISGRIGKSTVTEGALV 194
K +S+Q+YD A+A +QA+A + ARI++ YT+V +PISGRIG+STVTEGALV
Sbjct 137 KAVSKQQYDDALAAWKQAEA-------DYQVARIDVQYTRVLSPISGRIGRSTVTEGALV 189
Query 195 TNGQTTELATVQQLDPIYVDVTQSSNDFMRLKQSVEQGNLHKENAT-SNVELVMENGQTY 253
TNGQ LATV QLDPIYVDVTQ + L++++E G L K + V L +++G Y
Sbjct 190 TNGQAQSLATVTQLDPIYVDVTQPITKLLGLQKALESGRLQKTGENQAEVSLTLDDGSAY 249
Query 254 PLKGTLQFSDVTVDESTGSITLRAVFPNPQHTLLPGMFVRARIDEGVQPDAILIPQQGVS 313
PL GTL+FS+V+VD +TGS+TLRA FPNP LLPGMFV A + EGVQ AIL+PQQ +S
Sbjct 250 PLPGTLKFSEVSVDPTTGSVTLRAEFPNPNRKLLPGMFVHALLKEGVQNAAILVPQQAIS 309
Query 314 RTPRGDATVLIVNDKSQVEVRPVVASQAIGDKWLISEGLKSGDQVIVSGLQKARPGEQVK 373
R RG +V +V + VE R + + +G+ WLIS G+ G+++I G+Q+ R G V
Sbjct 310 RDTRGVPSVWVVKADNTVESREIQTLRTVGNAWLISNGVTEGERIITEGVQRVRSGIAVN 369
Query 374 A 374
A
Sbjct 370 A 370
>Q9KWV5 Toluene efflux pump periplasmic linker protein TtgD [Pseudomonas
putida (strain DOT-T1E)]
Length=382
Score = 322 bits (825), Expect = 2e-111
Identities = 176/355 (50%), Positives = 231/355 (65%), Gaps = 15/355 (4%)
Query 20 LIAGCNDKGEEKAHVGEPQVTVHIVKTAPLEVKTELPGRTNAYRIAEVRPQVSGIVLNRN 79
L+ GC + ++ P+V V+ VK L + T+LPGRT+AYR++EVRPQ SGI+ R
Sbjct 20 LLVGCGKQETVESTAVPPEVGVYTVKAQALTLTTDLPGRTSAYRVSEVRPQASGILQKRM 79
Query 80 FTEGSDVQAGQSLYQIDPATYQANYDSAKGELAKSEAAAAIAHLTVKRYVPLVGTKYISQ 139
F EG++V+ G+ LYQIDP TY+A LA++EA+ A +RY L+ T ISQ
Sbjct 80 FVEGAEVKQGEQLYQIDPRTYEAL-------LARAEASLLTAQNLARRYERLLDTNAISQ 132
Query 140 QEYDQAIADARQADAAVIAAKATVESARINLAYTKVTAPISGRIGKSTVTEGALVTNGQT 199
Q+YD A+A +QA +A + ARIN+ YTKV API+GRIG+S VTEGALVTNGQ
Sbjct 133 QQYDDAMATWKQA-------QAEAQMARINMQYTKVLAPITGRIGRSAVTEGALVTNGQA 185
Query 200 TELATVQQLDPIYVDVTQSSNDFMRLKQSVEQGNLHKENAT-SNVELVMENGQTYPLKGT 258
ELATV QLDPIYVDV Q + LK+++E G L + + V L +++G YPLKG
Sbjct 186 QELATVTQLDPIYVDVNQPITRLLGLKRALESGRLQRVGDNQAQVSLTLDDGTPYPLKGV 245
Query 259 LQFSDVTVDESTGSITLRAVFPNPQHTLLPGMFVRARIDEGVQPDAILIPQQGVSRTPRG 318
L+FS+V+V STGS+TLRA FPNP H LLPGMFV A ++EG Q AIL+P Q V R RG
Sbjct 246 LKFSEVSVAPSTGSVTLRAEFPNPDHKLLPGMFVHALLNEGEQQAAILVPHQAVGRDARG 305
Query 319 DATVLIVNDKSQVEVRPVVASQAIGDKWLISEGLKSGDQVIVSGLQKARPGEQVK 373
TV +V + VE R V Q +G+ WL+ G+ G++VI G+Q AR G VK
Sbjct 306 VPTVWVVKPDNTVESREVQTLQTVGNAWLLGAGINDGERVITEGVQLARSGITVK 360
>Q849Q9 Probable efflux pump periplasmic linker protein SepA [Pseudomonas
putida (strain ATCC 700007 / DSM 6899 / BCRC 17059
/ F1)]
Length=382
Score = 322 bits (825), Expect = 2e-111
Identities = 176/355 (50%), Positives = 231/355 (65%), Gaps = 15/355 (4%)
Query 20 LIAGCNDKGEEKAHVGEPQVTVHIVKTAPLEVKTELPGRTNAYRIAEVRPQVSGIVLNRN 79
L+ GC + ++ P+V V+ VK L + T+LPGRT+AYR++EVRPQ SGI+ R
Sbjct 20 LLVGCGKQETVESTAVPPEVGVYTVKAQALTLTTDLPGRTSAYRVSEVRPQASGILQKRM 79
Query 80 FTEGSDVQAGQSLYQIDPATYQANYDSAKGELAKSEAAAAIAHLTVKRYVPLVGTKYISQ 139
F EG++V+ G+ LYQIDP TY+A LA++EA+ A +RY L+ T ISQ
Sbjct 80 FVEGAEVKQGEQLYQIDPRTYEAL-------LARAEASLLTAQNLARRYERLLDTNAISQ 132
Query 140 QEYDQAIADARQADAAVIAAKATVESARINLAYTKVTAPISGRIGKSTVTEGALVTNGQT 199
Q+YD A+A +QA +A + ARIN+ YTKV API+GRIG+S VTEGALVTNGQ
Sbjct 133 QQYDDAMATWKQA-------QAEAQMARINMQYTKVLAPITGRIGRSAVTEGALVTNGQA 185
Query 200 TELATVQQLDPIYVDVTQSSNDFMRLKQSVEQGNLHKENAT-SNVELVMENGQTYPLKGT 258
ELATV QLDPIYVDV Q + LK+++E G L + + V L +++G YPLKG
Sbjct 186 QELATVTQLDPIYVDVNQPITRLLGLKRALESGRLQRVGDNQAQVSLTLDDGTPYPLKGV 245
Query 259 LQFSDVTVDESTGSITLRAVFPNPQHTLLPGMFVRARIDEGVQPDAILIPQQGVSRTPRG 318
L+FS+V+V STGS+TLRA FPNP H LLPGMFV A ++EG Q AIL+P Q V R RG
Sbjct 246 LKFSEVSVAPSTGSVTLRAEFPNPDHKLLPGMFVHALLNEGEQQAAILVPHQAVGRDARG 305
Query 319 DATVLIVNDKSQVEVRPVVASQAIGDKWLISEGLKSGDQVIVSGLQKARPGEQVK 373
TV +V + VE R V Q +G+ WL+ G+ G++VI G+Q AR G VK
Sbjct 306 VPTVWVVKPDNTVESREVQTLQTVGNAWLLGAGINDGERVITEGVQLARSGITVK 360
Lambda K H a alpha
0.314 0.130 0.356 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1699154
Database: 385cf7af278ea097e3980c2969374a03.SwissProt.fasta
Posted date: Jun 2, 2024 6:16 AM
Number of letters in database: 5,777
Number of sequences in database: 15
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
