Experimental Data - MicroScope - Web Interface System & Specialized Databases for (re)Annotation and Analysis of Microbial Genomes

SF1_1 SSAHA2 version 2.5.1 dir mRNAseq solexa

Total read number	9385760	100 %	Reads quality
Nb of unmapped reads	23383	0.25 %
Nb of reads mapped at least once	9362377	99.75 %
Nb of reads mapped on rRNA	8734838	93.06 %
Nb of reliable reads	9355674	99.68 %
Nb of reads kept on chromosome MYCTU_ MYCTU	9355674	99.68 %
Total read count on genomic objects (except rRNA) for Organism	321291	100 %
Total read count on genomic objects (except rRNA) into chromosome MYCTU_ MYCTU	321291	100 %
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SF1_2 SSAHA2 version 2.5.1 dir mRNAseq solexa

Total read number	22775188	100 %	Reads quality
Nb of unmapped reads	45356	0.20 %
Nb of reads mapped at least once	22729832	99.80 %
Nb of reads mapped on rRNA	19882467	87.30 %
Nb of reliable reads	22722990	99.77 %
Nb of reads kept on chromosome MYCTU_ MYCTU	22722990	99.77 %
Total read count on genomic objects (except rRNA) for Organism	321231	100 %
Total read count on genomic objects (except rRNA) into chromosome MYCTU_ MYCTU	321231	100 %
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SF1_3 SSAHA2 version 2.5.1 dir mRNAseq solexa

Total read number	12658746	100 %	Reads quality
Nb of unmapped reads	16600	0.13 %
Nb of reads mapped at least once	12642146	99.87 %
Nb of reads mapped on rRNA	10975616	86.70 %
Nb of reliable reads	12638122	99.84 %
Nb of reads kept on chromosome MYCTU_ MYCTU	12638122	99.84 %
Total read count on genomic objects (except rRNA) for Organism	184479	100 %
Total read count on genomic objects (except rRNA) into chromosome MYCTU_ MYCTU	184479	100 %
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SF4_1 SSAHA2 version 2.5.1 dir mRNAseq solexa

Total read number	12195659	100 %	Reads quality
Nb of unmapped reads	82248	0.67 %
Nb of reads mapped at least once	12113411	99.33 %
Nb of reads mapped on rRNA	11138995	91.34 %
Nb of reliable reads	12101610	99.23 %
Nb of reads kept on chromosome MYCTU_ MYCTU	12101610	99.23 %
Total read count on genomic objects (except rRNA) for Organism	825221	100 %
Total read count on genomic objects (except rRNA) into chromosome MYCTU_ MYCTU	825221	100 %
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SF4_2 SSAHA2 version 2.5.1 dir mRNAseq solexa

Total read number	11191631	100 %	Reads quality
Nb of unmapped reads	11166	0.10 %
Nb of reads mapped at least once	11180465	99.90 %
Nb of reads mapped on rRNA	10271705	91.78 %
Nb of reliable reads	11172167	99.83 %
Nb of reads kept on chromosome MYCTU_ MYCTU	11172167	99.83 %
Total read count on genomic objects (except rRNA) for Organism	453523	100 %
Total read count on genomic objects (except rRNA) into chromosome MYCTU_ MYCTU	453523	100 %
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SF4_3 SSAHA2 version 2.5.1 dir mRNAseq solexa

Total read number	12540771	100 %	Reads quality
Nb of unmapped reads	24217	0.19 %
Nb of reads mapped at least once	12516554	99.81 %
Nb of reads mapped on rRNA	11428214	91.13 %
Nb of reliable reads	12507756	99.74 %
Nb of reads kept on chromosome MYCTU_ MYCTU	12507756	99.74 %
Total read count on genomic objects (except rRNA) for Organism	464867	100 %
Total read count on genomic objects (except rRNA) into chromosome MYCTU_ MYCTU	464867	100 %
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SF5_1 SSAHA2 version 2.5.1 dir mRNAseq solexa

Total read number	11547879	100 %	Reads quality
Nb of unmapped reads	26184	0.23 %
Nb of reads mapped at least once	11521695	99.77 %
Nb of reads mapped on rRNA	10963210	94.94 %
Nb of reliable reads	11515240	99.72 %
Nb of reads kept on chromosome MYCTU_ MYCTU	11515240	99.72 %
Total read count on genomic objects (except rRNA) for Organism	421283	100 %
Total read count on genomic objects (except rRNA) into chromosome MYCTU_ MYCTU	421283	100 %
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SF5_2 SSAHA2 version 2.5.1 dir mRNAseq solexa

Total read number	10762002	100 %	Reads quality
Nb of unmapped reads	6648	0.06 %
Nb of reads mapped at least once	10755354	99.94 %
Nb of reads mapped on rRNA	10116869	94.01 %
Nb of reliable reads	10751152	99.90 %
Nb of reads kept on chromosome MYCTU_ MYCTU	10751152	99.9 %
Total read count on genomic objects (except rRNA) for Organism	218529	100 %
Total read count on genomic objects (except rRNA) into chromosome MYCTU_ MYCTU	218529	100 %
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SF5_3 SSAHA2 version 2.5.1 dir mRNAseq solexa

Total read number	12105546	100 %	Reads quality
Nb of unmapped reads	32667	0.27 %
Nb of reads mapped at least once	12072879	99.73 %
Nb of reads mapped on rRNA	10965390	90.58 %
Nb of reliable reads	12067759	99.69 %
Nb of reads kept on chromosome MYCTU_ MYCTU	12067759	99.69 %
Total read count on genomic objects (except rRNA) for Organism	290316	100 %
Total read count on genomic objects (except rRNA) into chromosome MYCTU_ MYCTU	290316	100 %
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SF6_1 SSAHA2 version 2.5.1 dir mRNAseq solexa

Total read number	14290748	100 %	Reads quality
Nb of unmapped reads	27998	0.20 %
Nb of reads mapped at least once	14262750	99.80 %
Nb of reads mapped on rRNA	13374196	93.59 %
Nb of reliable reads	14248939	99.71 %
Nb of reads kept on chromosome MYCTU_ MYCTU	14248939	99.71 %
Total read count on genomic objects (except rRNA) for Organism	756476	100 %
Total read count on genomic objects (except rRNA) into chromosome MYCTU_ MYCTU	756476	100 %
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SF6_2 SSAHA2 version 2.5.1 dir mRNAseq solexa

Total read number	16023174	100 %	Reads quality
Nb of unmapped reads	28361	0.18 %
Nb of reads mapped at least once	15994813	99.82 %
Nb of reads mapped on rRNA	14712104	91.82 %
Nb of reliable reads	15978083	99.72 %
Nb of reads kept on chromosome MYCTU_ MYCTU	15978083	99.72 %
Total read count on genomic objects (except rRNA) for Organism	977879	100 %
Total read count on genomic objects (except rRNA) into chromosome MYCTU_ MYCTU	977879	100 %
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SF6_3 SSAHA2 version 2.5.1 dir mRNAseq solexa

Total read number	9293598	100 %	Reads quality
Nb of unmapped reads	7122	0.08 %
Nb of reads mapped at least once	9286476	99.92 %
Nb of reads mapped on rRNA	8283594	89.13 %
Nb of reliable reads	9274489	99.79 %
Nb of reads kept on chromosome MYCTU_ MYCTU	9274489	99.79 %
Total read count on genomic objects (except rRNA) for Organism	739662	100 %
Total read count on genomic objects (except rRNA) into chromosome MYCTU_ MYCTU	739662	100 %
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