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Prior-Knowledge Description Expectation Prediction Conclusion Leaf Statistics
Component_51804 S-adenosylmethionine decarboxylase None - {{∅}} True - {{t}} Unconfirmed presence
Evidence_61341 TIGR01230 HMM None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_61343 TIGR00417 HMM None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_61342 TIGR01273 HMM None - {{∅}} False - {{f}} Unconfirmed absence
GenProp0641 spermidine biosynthesis from putrescine and S-adenosylmethionine~Spermine, spermidine and putrescine are a family of polyamines (positively charged organic polycations) that are important for cellular growth, most likely by stabilizing polynucleotides and membranes. Spermidine is derived from putrescine and the 4-aminobutyrate moiety of methionine (indirectly via S-adenosyl methionine). Spermine is synthesized by a second addition of 4-aminobutyrate to spermidine, and is more commonly found in eukaryotes. None - {{∅}} Both - {{t},{f}} Unconfirmed contradictory
Component_51811 arginine decarboxylase None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_72648 PF02675 HMM None - {{∅}} True - {{t}} Unconfirmed presence
Component_48844 agmatinase None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_72656 GenProp0641 GENPROP None - {{∅}} Both - {{t},{f}} Unconfirmed contradictory
Component_48843 putrescine biosynthesis from arginine (GenProp0642) None - {{∅}} False - {{f}} Unconfirmed absence
Component_51805 spermidine biosynthesis from putrescine (GenProp0641) None - {{∅}} Both - {{t},{f}} Unconfirmed contradictory
Evidence_72657 GenProp0642 GENPROP None - {{∅}} False - {{f}} Unconfirmed absence
Component_48842 spermidine synthase None - {{∅}} False - {{f}} Unconfirmed absence
GenProp0642 putrescine biosynthesis from arginine utilizing agmatinase~L-arginine can be converted to the polyamine putrescine via this pathway for the purposes of arginine catabolism or for the biosynthesis of spermidine. This version of the pathway utilizes agmatinase while another does the same reaction in two steps via carbamoylputrescine. None - {{∅}} False - {{f}} Unconfirmed absence
GenProp0219 spermidine biosynthesis from arginine (via agmatine)~This pathway uses arginine decarboxylase followed by agmatinase (agmatine ureohydrolase) instead of arginase (arginine ureohydrolase) followed by ornithine decarboxylase to get to putrescine, the immediate precursor of sperimidine. One of several possible arginine degradation pathways (see role_id 109) continues 3) putrescine transaminase 4) pyrroline dehydrogenase 5) glutamate-succinic semialdehyde transaminase 6) succinic semialdehyde dehydrogenase. None - {{∅}} Both - {{t},{f}} Unconfirmed contradictory