UPA00146 |
L-arabinose degradation via L-arabinitol~Degradation of L-arabinose via L-arabinitol pathway. The fungal L-arabinose catabolic pathway consists of aldose reductase (EC 1.1.1.21), L-arabinitol 4-dehydrogenase (EC 1.1.1.12), L-xylulose reductase (EC 1.1.1.10), D-xylulose reductase (EC 1.1.1.9), and xylulokinase (EC 2.7.1.17) which convert L-arabinose to D-xylulose 5-phosphate. . |
None - {{∅}} |
None - {{∅},{t}} |
Unexplained |
|
MUER15 |
Meta-UER 15~1 L-ribulose 5-phosphate => 1 D-xylulose 5-phosphate. |
True - {{t}} |
True - {{t}} |
Confirmed presence |
|
UER00571 |
glycolaldehyde and pyruvate from 2-dehydro-3-deoxy-L-arabinonate: step 1/1~1 2-dehydro-3-deoxy-L-arabinonate => 1 glycolaldehyde + 1 pyruvate. |
None - {{∅}} |
None - {{∅}} |
Unexplained |
|
UER00575 |
D-xylulose 5-phosphate from L-arabinose (fungal route): step 2/5~1 L-arabinitol + 1 NAD(+) => 1 H(+) + 1 L-xylulose + 1 NADH. |
None - {{∅}} |
None - {{∅}} |
Unexplained |
|
UCR01758 |
L-arabinitol + NAD(+) = H(+) + L-arabinose + NADH |
None - {{∅}} |
None - {{∅}} |
Unexplained |
|
VariantPath-2-UER00574 |
|
None - {{∅}} |
None - {{∅}} |
Unexplained |
|
UER00569 |
2-dehydro-3-deoxy-L-arabinonate from L-arabinose: step 2/3~1 H(2)O + 1 L-arabinono-1,4-lactone => 1 L-arabinonate. |
None - {{∅}} |
None - {{∅}} |
Unexplained |
|
UCR02439 |
ATP + L-ribulose = ADP + L-ribulose 5-phosphate |
True - {{t}} |
True - {{t}} |
Confirmed presence |
|
UCR01757 |
L-arabinose + NAD(+) = H(+) + L-arabinono-1,4-lactone + NADH |
None - {{∅}} |
None - {{∅}} |
Unexplained |
|
VariantPath-2-UPA00141 |
|
None - {{∅}} |
None - {{∅},{t}} |
Unexplained |
|
UER00570 |
2-dehydro-3-deoxy-L-arabinonate from L-arabinose: step 3/3~1 L-arabinonate => 1 2-dehydro-3-deoxy-L-arabinonate + 1 H(2)O. |
None - {{∅}} |
None - {{∅}} |
Unexplained |
|
VariantPath-1-UPA00141 |
|
None - {{∅}} |
None - {{∅}} |
Unexplained |
|
VariantPath-1-UER00574 |
|
None - {{∅}} |
None - {{∅}} |
Unexplained |
|
UPA00141 |
L-arabinose degradation via L-arabinono-1,4-lactone pathway~Degradation of L-arabinose via L-arabinono-1,4-lactone pathway. In this catabolic pathway, L-arabinose is oxidized to L-arabino-gamma-lactone (L-arabinono-1,4-lactone) by a NAD(P)+-dependent dehydrogenase. The lactone is cleaved by a lactonase to L-arabonate, followed by two successive dehydration reactions forming L-2-keto-3-deoxyarabonate (L-KDA)2 and alpha-ketoglutaric semialdehyde(alpha-KGSA). The last step is the NAD(P)+-dependent dehydrogenation of alpha-KGSA to alpha-ketoglutaric acid (referred to as the first pathway). Alternatively, L-KDA is cleaved through an aldolase reaction to glycolaldehyde and pyruvate (referred to as the second pathway). . |
None - {{∅}} |
None - {{∅},{t}} |
Unexplained |
|
ULS00270 |
D-xylulose 5-phosphate from L-arabinose (fungal route) |
None - {{∅}} |
None - {{∅},{t}} |
Unexplained |
|
UPA00463 |
L-arabinose degradation~Degradation of L-arabinose Degradation of L-arabinose, a major constituent of plant material. Bacteria and fungi can utilize this pentose sugar via different pathways. Two distinct pathways convert L-arabinose to D-xylulose 5-phosphate via L-ribulose (in bacteria) or via L-arabitol (in fungal). An additional pathway has been recently discovered in bacteria (A. brasiliense, H. seropedicae, P. saccharophila, S. meliloti). In this pathway, L-arabinose is oxidized to L-arabino-gamma-lactone. |
True - {{t}} |
True - {{t}} |
Confirmed presence |
|
UER00566 |
D-xylulose 5-phosphate from L-arabinose (bacterial route): step 2/3~1 ATP + 1 L-ribulose => 1 ADP + 1 L-ribulose 5-phosphate. |
True - {{t}} |
True - {{t}} |
Confirmed presence |
|
ULS00267 |
2-dehydro-3-deoxy-L-arabinonate from L-arabinose |
None - {{∅}} |
None - {{∅}} |
Unexplained |
|
UCR01903 |
L-arabinitol + NAD(+) = H(+) + L-xylulose + NADH |
None - {{∅}} |
None - {{∅}} |
Unexplained |
|
UCR00264 |
2,5-dioxopentanoate + H(2)O + NADP(+) = 2-oxoglutarate + H(+) + NADPH |
True - {{t}} |
True - {{t}} |
Confirmed presence |
|
UER00970 |
None~1 H(+) + 1 L-arabinose + 1 NADPH => 1 L-arabinitol + 1 NADP(+). |
None - {{∅}} |
None - {{∅}} |
Unexplained |
|
UER00572 |
2-oxoglutarate from 2-dehydro-3-deoxy-L-arabinonate: step 1/2~1 2-dehydro-3-deoxy-L-arabinonate => 1 2,5-dioxopentanoate + 1 H(2)O. |
None - {{∅}} |
None - {{∅}} |
Unexplained |
|
UER00576 |
D-xylulose 5-phosphate from L-arabinose (fungal route): step 3/5~1 H(+) + 1 L-xylulose + 1 NADPH => 1 NADP(+) + 1 xylitol. |
None - {{∅}} |
None - {{∅}} |
Unexplained |
|
UER00578 |
D-xylulose 5-phosphate from L-arabinose (fungal route): step 5/5~1 ATP + 1 D-xylulose => 1 ADP + 1 D-xylulose 5-phosphate. |
True - {{t}} |
True - {{t}} |
Confirmed presence |
|
UCR02278 |
2-dehydro-3-deoxy-L-arabinonate = 2,5-dioxopentanoate + H(2)O |
None - {{∅}} |
None - {{∅}} |
Unexplained |
|
UCR01896 |
NAD(+) + xylitol = D-xylulose + H(+) + NADH |
None - {{∅}} |
None - {{∅}} |
Unexplained |
|
UER00577 |
D-xylulose 5-phosphate from L-arabinose (fungal route): step 4/5~1 NAD(+) + 1 xylitol => 1 D-xylulose + 1 H(+) + 1 NADH. |
None - {{∅}} |
None - {{∅}} |
Unexplained |
|
UCR01761 |
L-arabinose = L-ribulose |
True - {{t}} |
True - {{t}} |
Confirmed presence |
|
ULS00049 |
D-xylulose 5-phosphate from L-arabinose (bacterial route) |
True - {{∅},{t}} |
True - {{t}} |
Confirmed presence |
|
UER00565 |
D-xylulose 5-phosphate from L-arabinose (bacterial route): step 1/3~1 L-arabinose => 1 L-ribulose. |
True - {{t}} |
True - {{t}} |
Confirmed presence |
|
UCR05850 |
L-ribulose 5-phosphate = D-xylulose 5-phosphate |
True - {{t}} |
True - {{t}} |
Confirmed presence |
|
UCR02522 |
L-arabinonate = 2-dehydro-3-deoxy-L-arabinonate + H(2)O |
None - {{∅}} |
None - {{∅}} |
Unexplained |
|
ULS00269 |
2-oxoglutarate from 2-dehydro-3-deoxy-L-arabinonate |
None - {{∅}} |
None - {{∅},{t}} |
Unexplained |
|
UCR01904 |
NADP(+) + xylitol = H(+) + L-xylulose + NADPH |
None - {{∅}} |
None - {{∅}} |
Unexplained |
|
UER00969 |
None~1 H(+) + 1 L-arabinose + 1 NADH => 1 L-arabinitol + 1 NAD(+). |
None - {{∅}} |
None - {{∅}} |
Unexplained |
|
UER00573 |
2-oxoglutarate from 2-dehydro-3-deoxy-L-arabinonate: step 2/2~1 2,5-dioxopentanoate + 1 H(2)O + 1 NADP(+) => 1 2-oxoglutarate + 1 H(+) + 1 NADPH. |
True - {{t}} |
True - {{t}} |
Confirmed presence |
|
UPA00145 |
L-arabinose degradation via L-ribulose~Degradation of L-arabinose via L-ribulose pathway. The bacterial L-arabinose catabolic pathway consists of L-arabinose isomerase (EC 5.3.1.4), ribulokinase (EC 2.7.1.16), and L-ribulose phosphate 4-epimerase (EC 5.1.3.4) which convert L-arabinose to D-xylulose 5-phosphate. The pathway and the genes of this pathway are well-established. |
True - {{∅},{t}} |
True - {{t}} |
Confirmed presence |
|
UER00568 |
2-dehydro-3-deoxy-L-arabinonate from L-arabinose: step 1/3~1 L-arabinose + 1 NAD(+) => 1 H(+) + 1 L-arabinono-1,4-lactone + 1 NADH. |
None - {{∅}} |
None - {{∅}} |
Unexplained |
|
UCR01784 |
2-dehydro-3-deoxy-L-arabinonate = glycolaldehyde + pyruvate |
None - {{∅}} |
None - {{∅}} |
Unexplained |
|
UER00574 |
D-xylulose 5-phosphate from L-arabinose (fungal route): step 1/5~H(+) + L-arabinose + [NADH or NADPH] => L-arabinitol + [NAD(+) or NADP(+)]. |
None - {{∅}} |
None - {{∅}} |
Unexplained |
|
UCR01759 |
L-arabinitol + NADP(+) = H(+) + L-arabinose + NADPH |
None - {{∅}} |
None - {{∅}} |
Unexplained |
|
UCR02526 |
H(2)O + L-arabinono-1,4-lactone = L-arabinonate |
None - {{∅}} |
None - {{∅}} |
Unexplained |
|
UCR01639 |
ATP + D-xylulose = ADP + D-xylulose 5-phosphate |
True - {{t}} |
True - {{t}} |
Confirmed presence |
|
ULS00268 |
glycolaldehyde and pyruvate from 2-dehydro-3-deoxy-L-arabinonate |
None - {{∅}} |
None - {{∅}} |
Unexplained |
|