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Prior-Knowledge Description Expectation Prediction Conclusion Leaf Statistics
Evidence_65886 TIGR02566 HMM None - {{∅}} None - {{∅}} Unexplained
Component_51272 Cas3, Ypest subtype variant None - {{∅}} None - {{∅}} Unexplained
Evidence_65889 TIGR03637 HMM None - {{∅}} None - {{∅}} Unexplained
Component_51274 Csy3 None - {{∅}} None - {{∅}} Unexplained
Component_51277 Cas1, Ypest region None - {{∅}} None - {{∅}} Unexplained
Component_51273 CRISPR-derived RNA endonuclease Csy4 None - {{∅}} None - {{∅}} Unexplained
Evidence_65885 TIGR02563 HMM None - {{∅}} None - {{∅}} Unexplained
Component_51275 Csy2 None - {{∅}} None - {{∅}} Unexplained
GenProp0310 CRISPR system, I-F/Ypest subtype~CRISPR repeats are by definition Clustered Regularly Interspaced Short Palindromic Repeats, described by Jansen [1]. Certain proteins, including Cas1 to Cas4, are found only in genomes with CRISPR repeats, and are near these repeats. Jansen, et al. describe CRISPR loci as having direct repeats, varying in size from 21 to 37 bp, interspaced by similarly sized non-repetitive sequences. Variants of CRISP/Cas loci (subtypes) have been described (Haft, Selengut, et al., submitted) in which certain groups of subtype-specific genes are found in addition to characteristic sets of the more widely distributed cas genes. The Ypest subtype, so named because this subtype is the only one found in the genome of Yersinia pestis, consists of cas1, cas3 and the subtype specific genes csy1-4. The cas3 gene of this subtype is sufficiently diverged from the cas3 gene of other CRISPR subtypes that the construction of a separate HMM was warranted. The spacers of these CRISPRs have been analyzed and some have been shown to have been captured from extrachromosomal sources [2]. The repeats associated with this subtype tend to have a periodicity of 60 nucleotides. This subtype is found only in the Proteobacteria. None - {{∅}} None - {{∅}} Unexplained
Component_51276 Csy1 None - {{∅}} None - {{∅}} Unexplained
Evidence_65887 TIGR02565 HMM None - {{∅}} None - {{∅}} Unexplained
Evidence_65888 TIGR02564 HMM None - {{∅}} None - {{∅}} Unexplained
Evidence_65884 TIGR02562 HMM None - {{∅}} None - {{∅}} Unexplained