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Prior-Knowledge Description Expectation Prediction Conclusion Leaf Statistics
Component_35638 trp operon repressor None - {{∅}} None - {{∅}} Unexplained
Evidence_13 TIGR00565 HMM None - {{∅}} None - {{∅}} Unexplained
Component_87 tryptophan synthase, beta subunit True - {{t}} True - {{t}} Confirmed presence
Evidence_48005 TIGR01321 HMM None - {{∅}} None - {{∅}} Unexplained
Component_85 anthranilate synthase component I True - {{t}} True - {{t}} Confirmed presence
Component_90 anthranilate phosphoribosyltransferase True - {{t}} True - {{t}} Confirmed presence
Evidence_16 TIGR00263 HMM True - {{t}} True - {{t}} Confirmed presence
Evidence_14 TIGR01815 HMM None - {{∅}} None - {{∅}} Unexplained
Component_161 anthranilate synthase component II True - {{t}} True - {{t}} Confirmed presence
Evidence_17 TIGR01415 HMM None - {{∅}} None - {{∅}} Unexplained
GenProp0037 tryptophan biosynthesis from ribose-5-phosphate~The essential amino acid tryptophan is synthesized in prokaryotes, plants, and fungi via a conserved six step pathway from the branchpoint compound chrosimate, a common precursor in the biosynthesis of aromatic amino acids [1]. Seven catalytic domains and two alpha/beta subunit complexes comprise this pathway. Individually expressed in some organisms, gene fusions encoding single proteins possessing two or more of these catalytic domains have been observed for every trp gene. Although the occurance of gene fusions have been shown to be phylogenetically unrelated, a conserved gene order can be discerned within the domain Bacteria. Occasionally gene(s) dissociations disrupt gene order as in Campylobacter jejuni and Deinococcus radiodurans, or the pathway is found split between two separate chromosomes as in Rhodobacter sphaeroides. In cyanobacteria, such as Nostoc and Anabaena, it is not uncommon to observe paralogous trp genes as part of a larger 'supraoperon' including other aromatic amino acid synthesizing genes as well as their trp counterparts [2]. True - {{t}} True - {{t}} Confirmed presence
Evidence_18 TIGR00262 HMM True - {{t}} True - {{t}} Confirmed presence
Component_91 N-(5'phosphoribosyl)anthranilate isomerase True - {{t}} True - {{t}} Confirmed presence
Evidence_137 TIGR00566 HMM True - {{t}} True - {{t}} Confirmed presence
Evidence_2374 TIGR01919 HMM None - {{∅}} None - {{∅}} Unexplained
Evidence_15 TIGR01820 HMM None - {{∅}} None - {{∅}} Unexplained
Evidence_19 PF00218 HMM True - {{t}} True - {{t}} Confirmed presence
Component_89 indole-3-glycerol phosphate synthase True - {{t}} True - {{t}} Confirmed presence
Evidence_12 TIGR00564 HMM True - {{t}} True - {{t}} Confirmed presence
Evidence_21 PF00697 HMM True - {{t}} True - {{t}} Confirmed presence
Evidence_53104 TIGR01251 HMM True - {{t}} True - {{t}} Confirmed presence
Component_88 tryptophan synthase, alpha subunit True - {{t}} True - {{t}} Confirmed presence
Evidence_20 TIGR01245 HMM True - {{t}} True - {{t}} Confirmed presence
Component_40735 ribose-phosphate pyrophosphokinase True - {{t}} True - {{t}} Confirmed presence