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Prior-Knowledge Description Expectation Prediction Conclusion Leaf Statistics
Component_63749 SynChlorMet cassette radical SAM/SPASM protein ScmE None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_85483 TIGR04250 HMM None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_85486 TIGR04249 HMM None - {{∅}} False - {{f}} Unconfirmed absence
Component_63751 SynChlorMet cassette protein ScmD None - {{∅}} False - {{f}} Unconfirmed absence
Component_63753 putative SynChlorMet system core peptide None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_85487 TIGR04252 HMM None - {{∅}} False - {{f}} Unconfirmed absence
Component_63752 SynChlorMet cassette protein ScmC None - {{∅}} False - {{f}} Unconfirmed absence
GenProp1029 radical SAM/SPASM system SynChlorMet~This property features a four-gene cassette that appears to be involved in peptide modification. The system has both a PqqD homolog and two PqqE homologs. The predicted fifth component, putative modification target ScmA, is not identified, but Clim_1912 (YP_001943923.1) from Chlorobium limicola DSM 245 is suggested; homologous ORFs are demonstrated in the cassettes of the other species with the cassette, and their alignment modeled by TIGR04252. Three other species with the cassette are Syntrophobacter fumaroxidans MPOB, Methanocella paludicola SANAE, and delta proteobacterium NaphS2. Regions homologous to Clim_1912 are found in the other three species, and conservation at the amino acid level appears strongest in the reading frame of Clim_1912. The SPASM domain involvement in peptide modification is described in PMID:21478363. None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_85484 TIGR04248 HMM None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_85485 TIGR04251 HMM None - {{∅}} False - {{f}} Unconfirmed absence
Component_63750 SynChlorMet cassette radical SAM/SPASM protein ScmF None - {{∅}} False - {{f}} Unconfirmed absence