Evidence_85287 |
TIGR01111 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_75159 |
TIGR03271 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_75174 |
TIGR03288 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_75163 |
TIGR03275 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_63554 |
methyl-coenzyme M reductase operon protein D |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_85294 |
TIGR01114 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_75169 |
TIGR03285 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_75171 |
TIGR03287 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_85292 |
TIGR02507 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_54220 |
methanogenesis radical SAM marker protein |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_54226 |
methanogenesis marker 16 metalloprotein |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_85289 |
TIGR01148 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_63561 |
tetrahydromethanopterin S-methyltransferase, subunit D |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_63563 |
tetrahydromethanopterin S-methyltransferase, subunit F |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_75162 |
TIGR03274 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_63565 |
tetrahydromethanopterin S-methyltransferase, subunit H |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_75158 |
TIGR03270 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_54228 |
CoB--CoM heterodisulfide reductase, subunit B |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_63555 |
methyl-coenzyme M reductase I operon protein C |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_75160 |
TIGR03272 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_54219 |
methanogenesis marker domain 9 |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_54214 |
methanogenesis marker protein 5 |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_54218 |
methanogenesis marker protein 8 |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_63559 |
tetrahydromethanopterin S-methyltransferase, subunit B |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_85288 |
TIGR04166 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_54212 |
methanogenesis marker protein 3 |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_54210 |
methanogenesis marker protein 1 |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_75177 |
TIGR03257 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_54223 |
methanogenesis marker 13 metalloprotein |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_75165 |
TIGR03278 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_75170 |
TIGR03286 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_54232 |
methyl-coenzyme M reductase, gamma subunit |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_54231 |
methyl-coenzyme M reductase, beta subunit |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_75176 |
TIGR03256 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_54224 |
methanogenesis marker protein 14 |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_54222 |
methanogenesis marker protein 12 |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_75164 |
TIGR03277 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_85283 |
TIGR03260 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_85285 |
TIGR03269 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_54221 |
methanogenesis imperfect marker 11 |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_75155 |
TIGR03266 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
GenProp0722 |
methanogenesis marker set~Members of this genome property are, at least for now, largely uncharacterized proteins that appear to represent marker proteins for methanogenic archaea, as detected by our novel algorithm, partial phylogenetic profiling. Substrates that can be reduced wih H2 to methane may include methanol only, as in Methanosphaera stadtmanae, or carbon dioxide and other compounds. This Genome Property represents proteins that both are universal in the first ten completed genomes of archaeal methanogens and can serve as markers for methanogenesis (are found nowhere else). These markers have the same phylogenetic distribution, among completely sequenced genomes, as the enzyme methyl-coenzyme M reductase, whose components (for now) are represented in a separate Genome Property, GenProp0719. This analysis was performed without the availability of an anaerobic methane-oxidizing archaeal genome sequence, and it is unclear how such a genome would affect the results. |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_63560 |
tetrahydromethanopterin S-methyltransferase, subunit C |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_63562 |
tetrahydromethanopterin S-methyltransferase, subunit E |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_85293 |
TIGR01149 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_63564 |
tetrahydromethanopterin S-methyltransferase, subunit G |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_75178 |
TIGR03259 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_54229 |
CoB--CoM heterodisulfide reductase, subunit C |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_54230 |
methyl-coenzyme M reductase, alpha subunit |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_54213 |
methanogenesis marker protein 4 |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_54215 |
methanogenesis marker protein 6 |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_85290 |
TIGR01112 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_54217 |
methanogenesis marker protein 7 |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_54211 |
methanogenesis marker protein 2 |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_75172 |
TIGR03291 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_75156 |
TIGR03267 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_85291 |
TIGR01113 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_63556 |
methyl coenzyme M reductase system, component A2 |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_75166 |
TIGR03280 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_75157 |
TIGR03268 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_85284 |
TIGR03264 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_54227 |
methanogenesis marker protein 17 |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_54225 |
methanogenesis marker protein 15 |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_75167 |
TIGR03281 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_63558 |
tetrahydromethanopterin S-methyltransferase, subunit A |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_75175 |
TIGR03290 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_75168 |
TIGR03282 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|