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Prior-Knowledge Description Expectation Prediction Conclusion Leaf Statistics
GenProp0701 DNA sulfur modification system dnd~Several bacteria have an unusual DNA phenotype, Dnd (degradation during electrophoresis). This property results from a sulfur modification on a G residue, shown in one example to occur at a rate of about one sulfur per 6000 base pairs. Study of Streptomyces lividans 1326 showed a stringent requirement for a core motif GGCC within a longer recognition region represented as cGGCCgccg (see PMID: 17439960). Five characteristic genes, including a predicted cysteine sulfurtransferase related to IscS, appear responsible for the dnd phenotype. Through comparative genomic studies, we find that the, beyond a core set of the three genes dndC, dndD, and dndE, other proteins may be associated. That is, they show up specifically in genomes that carry dndCDE and occur nearby, but do not show up in all such genomes. Models TIGR03236, TIGR03237, and TIGR03238 are examples of such dnd-associated protein families. None - {{∅}} False - {{f}} Unconfirmed absence
Component_54164 dnd operon putative ATPase DndB None - {{∅}} False - {{f}} Unconfirmed absence
Component_54165 dnd system cysteine sulfurtransferase None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_75024 TIGR03185 HMM None - {{∅}} False - {{f}} Unconfirmed absence
Component_54104 dnd operon putative sulfurtransferase DndC None - {{∅}} False - {{f}} Unconfirmed absence
Component_54105 dnd operon putative ATPase DndD None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_75099 TIGR03238 HMM None - {{∅}} False - {{f}} Unconfirmed absence
Component_63372 dnd system-associated protein 4 None - {{∅}} False - {{f}} Unconfirmed absence
Component_54106 dnd operon putative carboxylase DndE None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_75098 TIGR03237 HMM None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_75023 TIGR03183 HMM None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_75097 TIGR03236 HMM None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_75090 TIGR03233 HMM None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_85082 TIGR04062 HMM None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_75025 TIGR03184 HMM None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_75096 TIGR03235 HMM None - {{∅}} False - {{f}} Unconfirmed absence
Component_54171 DNA phosphorothioation-dependent restriction protein DptH None - {{∅}} False - {{f}} Unconfirmed absence
Component_54170 DNA phosphorothioation-dependent restriction protein DptG None - {{∅}} False - {{f}} Unconfirmed absence
Component_54172 DNA phosphorothioation-dependent restriction protein DptF None - {{∅}} False - {{f}} Unconfirmed absence