Evidence_72465 |
GenProp0617 GENPROP |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_90 |
TIGR01016 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_5462 |
NADH dehydrogenase I, I subunit |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_83 |
TIGR00178 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
GenProp0135 |
NADH dehydrogenase I~Several multichain membrane complexes couple electron transfer involving NADH to ion transport. This property represents an NADH dehydrogenase termed complex I, whose individual subunits are designated A through N. The electron acceptor is a quinone, ubiquinone, in most bacteria and in the related mitochondrial complex. The state for this property must be set to NO for related but distinct complexes, such as that from Methanosarcina in which F420H2 replaces NADH. |
None - {{∅}} |
Both - {{t},{f}} |
Unconfirmed contradictory |
|
Component_51623 |
cytochrome b subunit |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_51613 |
Generation of a ATP from ADP utilizing a proton (or sodium ion) gradient |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_72427 |
PF00032 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_342 |
A subunit of ATP synthase F0 cluster |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_141 |
succinyl-CoA synthetase, beta subunit |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_12615 |
PF05683 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_72453 |
TIGR02106 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_5452 |
NADH dehydrogenase I, H subunit |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_353 |
B subunit |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_72449 |
TIGR02842 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_51677 |
subunit III, QoxC |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_5392 |
NADH dehydrogenase I, C subunit |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_142 |
succinate dehydrogenase, flavoprotein subunit |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_347 |
F1 gamma subunit of F1/F0 ATP synthase |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_5472 |
NADH dehydrogenase I, J subunit |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_51809 |
succinate dehydrogenase, hydrophobic membrane anchor |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_72564 |
GenProp0129 GENPROP |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_5382 |
NADH dehydrogenase I, B subunit |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_72565 |
TIGR02926 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_2430 |
TIGR01145 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_55151 |
PF02823 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_143 |
succinate dehydrogenase, iron-sulfur protein |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_12634 |
PF01058 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_84 |
TIGR00183 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_72418 |
GenProp0128 GENPROP |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_2424 |
TIGR01131 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_51519 |
subunit I (CcoN) |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_68299 |
PF05545 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
GenProp0033 |
TCA cycle~PARTIAL The TCA cycle, also called the Krebs cycle, citrate cycle, and tricarboxylic acid cycle, is performed in eukaryotic mitochondria and in many prokaryotes. This property refers to the forward direction: from oxaloacetate and acetate to citrate, to isocitrate, to 2-oxoglutarate, to succinate, to fumarate, to malate, to oxaloacetate, with the release of two molecules of C02. It runs only under aerobic conditions. The state YES means the cycle is complete. A complete TCA cycle may correlate with use of TCA intermediates as biosynthetic precursors and with anaplerotic (TCA cycle intermediate-replenishing) reactions such as the glyoxylate shunt. The PARTIAL state indicates the pathway does not form a cycle but may contain several consecutive steps. The direction of flux through this arc is not specified when the state is set and may be in the reductive (reverse) direction. The reverse TCA cycle, an alternative to the Calvin cycle for carbon dioxide fixation, is covered by a separate property. |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_12774 |
TIGR01959 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_72467 |
TIGR02857 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
GenProp0617 |
cytochrome (quinone) oxidase, bd type~The cytochrome bd complex is a quinol oxidase, oxygen reductase. Usually this complex functions to couple the reduced quinone pool to the oxygen terminal electron acceptor in aerobic respiration. It has been reported that certain anaerobes or microaerophiles may utilize this system to reduce the amount of oxygen present in their local environment [1]. The complex is composed of two subunits: Subunit I (CydA) contains the quinone binding site [2] and is also a component of the cytochrome b0 complex. Subunit II (CydB) contains the binding site for heme b558. Additionally, the complex contains two other hemes, b595 and d which make up the oxygen reduction site [3]. |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_51612 |
Generation of a proton (or sodium ion) gradient by the coupling of NADH oxidation (to NAD+) with oxygen reduction (to water) |
None - {{∅}} |
Both - {{t},{f}} |
Unconfirmed contradictory |
|
Component_5492 |
NADH dehydrogenase I, L subunit |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_89 |
TIGR01019 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_12815 |
TIGR01972 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_144 |
succinate dehydrogenase, cytochrome b subunit |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_51739 |
H subunit |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_72432 |
PF00355 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_51736 |
A1 stalk complex, E subunit |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_145 |
fumarate hydratase, class I N-term or class II |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_51675 |
subunit I, QoxB |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_5372 |
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_72413 |
GenProp0033 GENPROP |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_140 |
succinyl-CoA synthetase, alpha subunit |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_92 |
TIGR01811 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_55149 |
PF00430 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_12704 |
PF00146 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_68321 |
TIGR02745 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_2679 |
TIGR01941 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_98 |
TIGR01763 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_72448 |
TIGR01473 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_2426 |
TIGR01260 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_346 |
F1 beta subunit of F1/F0 ATP synthase |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_12744 |
TIGR01770 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_96 |
TIGR01759 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
GenProp0612 |
aerobic electron transfer (transport) chain, ETC~These complexes act in the process of oxidative phosphorylation to create a proton gradient which powers the ATP synthase complex. Reducing equivalents in the form of NADH and quinone from the TCA cycle stepped down in potential finally resulting in a reduced cytochrome c which, in cytochrome oxidase, pairs with oxygen as a terminal elextron acceptor. |
None - {{∅}} |
Both - {{t},{f}} |
Unconfirmed contradictory |
|
Component_51622 |
cytochrome c subunit |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_2429 |
TIGR01146 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_51737 |
A1 stalk complex, F subunit |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_77 |
TIGR01800 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_87 |
TIGR01350 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_72562 |
TIGR02924 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_51545 |
accessory, ferredoxin-like, FixG |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_12714 |
PF00499 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_72426 |
PF02167 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_12664 |
PF01257 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_72450 |
TIGR02843 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_72561 |
TIGR02923 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_2427 |
TIGR00962 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_51642 |
cyd operon protein YbgT (Proteobacterial) |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_72428 |
PF00033 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_51744 |
dihydrolipoamide dehydrogenase, LpdA (E3) |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_352 |
A subunit |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_51640 |
protoheme IX farnesyltransferase, CyoE |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_72421 |
GenProp0135 GENPROP |
None - {{∅}} |
Both - {{t},{f}} |
Unconfirmed contradictory |
|
Evidence_55111 |
TIGR01340 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_72442 |
TIGR00203 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
GenProp0129 |
Na+-translocating NADH-quinone reductase~Na+-translocating NADH:ubiquinone oxidoreductase is found in marine, halophilic, and pathogenic Gram-negative bacteria. The NQR complex contains six structural subunits and acts as Na(+) pump (see PMID:11248187). See TIGR01936-TIGR01941. |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_72555 |
PF01991 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
GenProp0483 |
cytochrome c oxidase, cbb3-type~Cytochrome cbb(3) oxidase belongs to the family of heme-copper oxidases and couples using oxygen as a terminal electron acceptor with pumping protons across the membrane. This oxidase is related to, yet signficantly different from the mitochondrial cytochrome c oxidase and is largely restricted to the Proteobacteria. |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_72508 |
TIGR02897 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_348 |
F1 delta subunit of F1/F0 ATP synthase |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_51678 |
subunit IV, QoxD |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_345 |
F1 alpha subunit of F1/F0 ATP synthase |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_343 |
B subunit of ATP synthase F0 cluster |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_136 |
isocitrate dehydrogenase |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_51616 |
quinone reduction (NADH dehydrogenases) |
None - {{∅}} |
Both - {{t},{f}} |
Unconfirmed contradictory |
|
Evidence_78 |
TIGR01793 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_72553 |
GenProp0623 GENPROP |
None - {{∅}} |
None - {{∅}} |
Unexplained |
|
GenProp0611 |
aerobic respiration~Aerobic respiration is the complex series of pathways in which a common organic intermediate (generally pyruvate) is broken down into carbon dioxide (CO2) and water (H20) with the concomitant production of ATP in the presence of oxygen. Pyruvate is generated from glucose via glycolysis. The first step of this process is conversion of pyruvate to acetyl-CoA which then enters the Krebs (or, TCA) cycle. Acetyl-CoA may also be generated independently of pyruvate via the breakdown of other organic compounds. The TCA cycle generates reducing equivalents in the form of NADH. NADH, in turn delivers the electrons to the top of the electron transport chain (oxidative phosphorylation). This chain results in the pumping of protons (and/or sodium ions) to form a gradient. Ions flowing back with this gradient power the ATP-generation machines of the cell. Oxygen acts as the terminal electron acceptor for the electron-transport chain. |
None - {{∅}} |
Both - {{t},{f}} |
Unconfirmed contradictory |
|
Component_51735 |
A1 stalk complex, D subunit |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_5502 |
NADH dehydrogenase I, M subunit |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_86 |
TIGR01347 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_5362 |
fumarate hydratase, class I C-term or class II |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
GenProp0128 |
F1/F0 ATPase~F1/F0 ATP synthase: F1 and F0 represent two major clusters of subunits. F1 is the peripheral membrane associated cluster. The F1 subunits: alpha, beta, gamma, delta, epsilon, have the same names both in prokaryotes and eukaryotes. F0 is the integral membrane cluster. In F0, nomenclatures differ. For example, prokaryotic chain A matches eukaryotic chain 6. |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_12654 |
PF00346 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_5412 |
NADH dehydrogenase I, E subunit |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_93 |
TIGR00384 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_2428 |
TIGR01039 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_100 |
TIGR01320 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_51637 |
subunit I, CyoB |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_72487 |
GenProp0620 GENPROP |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_94 |
TIGR02970 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_51630 |
subunit II, CydB |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_5422 |
NADH dehydrogenase I, F subunit |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_146 |
malate dehydrogenase |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_51742 |
thiamine pyrophosphate-binding subunit, SucA (E1) |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_85 |
TIGR00239 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_51656 |
Transporter for assembly, CydC |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_134 |
citrate synthase |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_72439 |
GenProp0615 GENPROP |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_72431 |
PF00034 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_5512 |
NADH dehydrogenase I, N subunit |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_72434 |
GenProp0613 GENPROP |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
GenProp0618 |
cytochrome (quinone) oxidase, bo type~The cytochrome bo complex is a quinol oxidase, oxygen reductase which functions in electron transfer chain of aerobic respiration in bacteria. The bo complex contains two heme b (protoheme IX) molecules designated b562 and b595 as well as an active site copper atom. This complex is structurally analagous to the aa3-type cytochrome c oxidases [1] which contains cytochromes a and copper. |
None - {{∅}} |
Both - {{t},{f}} |
Unconfirmed contradictory |
|
GenProp0630 |
2-oxoglutarate dehydrogenase system~This enzyme system utilizes three components E1 (thiamine pyrophosphate-binding subunit, SucA), E2 (dihydrolipoamide succinyltransferase, SucB) and E3 (dihydrolipoamide dehydrogenase, LpdA) for the interconversion of 2-oxoglutarate (alpha-ketoglutarate) and succinyl-CoA. In addition to lipoate and thiamine pyrophosphate, FAD is also involved. In the course of the reaction CO2 is released and and one molecule of NAD+ is converted to NADH. This reaction is an essential component of the TCA (Krebs) cycle. |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_12795 |
TIGR01971 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_357 |
F subunit |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
GenProp0616 |
single complex oxygen reduction and quinone re-oxidation~Many aerobic bacteria have complexes for the reduction of oxygen that are independent of cytochrome c (as found in mitochondria). These complexes carry out the conversion of oxygen to water, the oxidation of reduced quinones and the pumping of protons to generate the proton gradient for ATP generateion. Examples include the cytochrome bd complex and the cytochrome bo complex. |
None - {{∅}} |
Both - {{t},{f}} |
Unconfirmed contradictory |
|
Component_5432 |
NADH dehydrogenase I, G subunit |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_72486 |
TIGR02882 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_72516 |
TIGR01432 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_51638 |
subunit III, CyoC |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_72515 |
TIGR02901 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_72440 |
PF01654 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_12794 |
TIGR01962 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_72557 |
TIGR01043 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_12754 |
TIGR01957 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_72443 |
TIGR01433 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_72655 |
TIGR02968 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
GenProp0615 |
cytochrome c based oxygen reduction and quinone re-oxidation~Mitochondria and many aerobic bacteria utilize cytochrome c as a mobile electron carrier to couple the processes of oxygen reduction to water and quinone re-oxidation. These two processes occur on two separate complexes, cytochrome c oxidase and cytochrome c reductase, respectively. Both of these processes als o result in the pumping of protons across the cell membrane to generate the proton gradient necessary for ATP generation. |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_72558 |
TIGR01041 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_81 |
TIGR00175 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_51679 |
single complex cytochrome (quinone) oxidase |
None - {{∅}} |
Both - {{t},{f}} |
Unconfirmed contradictory |
|
Evidence_91 |
TIGR01816 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_2678 |
TIGR01940 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_137 |
2-oxoglutarate dehydrogenase system |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_12784 |
TIGR01961 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_51631 |
subunit II, CyoA |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_51521 |
subunit III (CcoP) |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_72560 |
GenProp0629 GENPROP |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_51639 |
subunit IV, CyoD |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_354 |
C subunit |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_12604 |
PF05681 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_51617 |
quinone re-oxidation, oxygen reduction |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_51732 |
A1 stalk complex, A subunit |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_12764 |
TIGR01958 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_5402 |
NADH dehydrogenase I, D subunit |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_82 |
TIGR00127 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_135 |
aconitate hydratase |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_68301 |
TIGR02736 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_72441 |
PF02322 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_95 |
TIGR00979 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_51733 |
A1 stalk complex, B subunit |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_51520 |
subunit II (CcoO) |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_55150 |
PF00137 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_12724 |
PF00420 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_72435 |
GenProp0483 GENPROP |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_79 |
TIGR01341 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_27940 |
TIGR02046 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_97 |
TIGR01758 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_72496 |
GenProp0612 GENPROP |
None - {{∅}} |
Both - {{t},{f}} |
Unconfirmed contradictory |
|
Evidence_2425 |
TIGR01144 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_72552 |
GenProp0614 GENPROP |
None - {{∅}} |
None - {{∅}} |
Unexplained |
|
Evidence_2674 |
TIGR01936 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_51657 |
Transporter for assembly, CydD |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_51626 |
a cytochrome c oxidase |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_51608 |
Generation of NADH from NAD+ by oxidation of electron donor molecules |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_51624 |
iron-sulfur cluster subunit |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
GenProp0629 |
A1/A0 ATPase~This ATP synthase is the archaebacterial version of the F1/F0 ATP synthase found in bacteria in the sense that it functions in the ATP synthetic direction [1], although it also has similarities to the V1/V0 (V-type, vacuolar) ATPase in eucarya which hydrolyzes ATP in order to acidify cellular compartments. |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_80 |
TIGR00117 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_51522 |
subunit CcoQ |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_72455 |
TIGR02847 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_2675 |
TIGR01937 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_72567 |
TIGR02927 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_2676 |
TIGR01938 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_355 |
D subunit |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_12805 |
TIGR01973 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_2431 |
TIGR01216 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_12674 |
PF01512 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_12614 |
TIGR00979 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_72570 |
GenProp0630 GENPROP |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_68300 |
TIGR00847 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_72474 |
TIGR02868 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_51734 |
A1 stalk complex, C subunit |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_72524 |
GenProp0616 GENPROP |
None - {{∅}} |
Both - {{t},{f}} |
Unconfirmed contradictory |
|
Evidence_2677 |
TIGR01939 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_72466 |
GenProp0618 GENPROP |
None - {{∅}} |
Both - {{t},{f}} |
Unconfirmed contradictory |
|
Evidence_68298 |
TIGR00782 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_76 |
TIGR01798 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_51743 |
dihydrolipoamide succinyltransferase, SucB (E2) |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
GenProp0613 |
cytochrome c reductase~The component of the oxidative phosphorylation electron transfer chain responsible for transferring electrons from quinones to cytochrome c. |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_68297 |
TIGR00781 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_344 |
C subunit of ATP synthase F0 cluster |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_51625 |
a cytochrome c reductase |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_5482 |
NADH dehydrogenase I, K subunit |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_12624 |
PF00507 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_12734 |
TIGR01974 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Component_51629 |
subunit I, CydA |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_51676 |
subunit II, QoxA |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_349 |
F1 epsilon subunit of F1/F0 ATP synthase |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_68296 |
TIGR00780 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_99 |
TIGR01772 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_51523 |
insertion/maturation protein CcoS |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_72429 |
TIGR01416 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|
Evidence_72559 |
TIGR00309 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
GenProp0620 |
cytochrome (quinone) oxidase, aa3 type, QoxABCD~The cytochrome (quinone) oxidase complex QoxAB is closely related to the bacillus cytochrome c oxidase of the caa3 type. This complex couples the reduction of oxidized quinones with the reduction of molecular oxygen to water and the pumping of protons. |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Component_356 |
E subunit |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_72556 |
PF01990 HMM |
None - {{∅}} |
False - {{f}} |
Unconfirmed absence |
|
Evidence_12644 |
PF00329 HMM |
None - {{∅}} |
True - {{t}} |
Unconfirmed presence |
|