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Prior-Knowledge Description Expectation Prediction Conclusion Leaf Statistics
Component_215 nitrogenase component I (dinitrogenase) None - {{∅}} False - {{f}} Unconfirmed absence
Component_51462 NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase None - {{∅}} False - {{f}} Unconfirmed absence
Component_227 iron-sulfur cofactor synthesis protein None - {{∅}} False - {{f}} Unconfirmed absence
Component_213 transcriptional regulator None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_72579 TIGR01860 HMM None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_184 TIGR01283 HMM None - {{∅}} False - {{f}} Unconfirmed absence
Component_51756 nitrogenase, molybdenum-iron protein, beta subunit None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_68221 PF07357 HMM None - {{∅}} False - {{f}} Unconfirmed absence
GenProp0631 nitrogenase, Fe-only~Three homologous types of nitrogenase are the common molybdenum-containing, the alternative vanadium (V)-containing, and the alterantive iron (Fe)-only. This Genome Property represents presence in a genome of the Fe-only nitrogenase system, which acts in nitrogen fixation, and its accessory proteins. None - {{∅}} False - {{f}} Unconfirmed absence
Component_51761 nifX neighbor TIGR02935/DUF269 None - {{∅}} False - {{f}} Unconfirmed absence
Component_51755 nitrogenase, molybdenum-iron protein, alpha subunit None - {{∅}} False - {{f}} Unconfirmed absence
Component_221 nitrogen fixation protein NifQ None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_188 PF04891 HMM None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_192 PF04319 HMM None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_72587 GenProp0633 GENPROP None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_68224 TIGR02663 HMM None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_72588 GenProp0631 GENPROP None - {{∅}} False - {{f}} Unconfirmed absence
Component_51759 nitrogen fixation protein NifM None - {{∅}} False - {{f}} Unconfirmed absence
Component_51762 nif-specific ferredoxin None - {{∅}} False - {{f}} Unconfirmed absence
Component_51751 Fe-only nitrogenase, beta subunit None - {{∅}} False - {{f}} Unconfirmed absence
Component_51463 ADP-ribosyl-[dinitrogen reductase] hydrolase None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_72576 TIGR01861 HMM None - {{∅}} False - {{f}} Unconfirmed absence
Component_216 nitrogenase iron-molybdenum cofactor biosynthesis protein None - {{∅}} False - {{f}} Unconfirmed absence
Component_214 nitrogenase iron-molybdenum cofactor biosynthesis protein None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_182 TIGR01290 HMM None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_68223 TIGR02662 HMM None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_72577 TIGR02929 HMM None - {{∅}} False - {{f}} Unconfirmed absence
Component_51750 Fe-only nitrogenase, delta subunit None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_187 TIGR01285 HMM None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_72592 TIGR02935 HMM None - {{∅}} False - {{f}} Unconfirmed absence
Component_51749 Fe-only nitrogenase, alpha subunit None - {{∅}} False - {{f}} Unconfirmed absence
Component_224 homocitrate synthase None - {{∅}} False - {{f}} Unconfirmed absence
GenProp0632 nitrogenase, V-containing~Three homologous types of nitrogenase are the common molybdenum-containing, the alternative vanadium (V)-containing, and the alterantive iron (Fe)-only. This Genome Property represents presence in a genome of the V-containing nitrogenase, which acts in nitrogen fixation, and its accessory proteins. None - {{∅}} False - {{f}} Unconfirmed absence
Component_220 nitrogenase molybdenum-iron protein, NifN subunit None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_72583 TIGR02931 HMM None - {{∅}} False - {{f}} Unconfirmed absence
Component_217 nitrogenase component II (dinitrogenase reductase) None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_72591 TIGR02934 HMM None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_72580 TIGR01282 HMM None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_72608 TIGR02940 HMM None - {{∅}} False - {{f}} Unconfirmed absence
GenProp0633 nitrogenase, Mo-containing~The most common type of nitrogenase contains molybdenum as well as iron. Alternative nitrogenases with homologous alpha and beta subunits but somewhat different sets of accessory proteins use vanadium and iron, or just iron. So far, species with one or more alternative nitrogenases also contain a MoFe nitrogenase. This genome property consists of the structural subunits of the MoFe nitrogenase and specific accessory factors. None - {{∅}} False - {{f}} Unconfirmed absence
Component_51754 V-containing nitrogenase, delta subunit None - {{∅}} False - {{f}} Unconfirmed absence
Component_51753 V-containing nitrogenase, beta subunit None - {{∅}} False - {{f}} Unconfirmed absence
Component_51760 probable nitrogen fixation protein NifT None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_68220 TIGR02660 HMM None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_191 PF03206 HMM None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_185 TIGR01287 HMM None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_72590 TIGR02933 HMM None - {{∅}} False - {{f}} Unconfirmed absence
Component_51772 Fe-only nitrogenase, anfO/anf1 accessory protein None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_72589 GenProp0632 GENPROP None - {{∅}} False - {{f}} Unconfirmed absence
GenProp0029 nitrogen fixation~Nitrogen fixation is the conversion of atmospheric nitrogen, N2 (with its difficult-to-cleave triple bond) into usable forms such as NH3. Conditions should be anaerobic or microaerophilic. The characteristic enzyme is nitrogenase, but many other proteins are involved. Nitrogenase has an iron protein and MoFe, VFe, or FeFe alpha/beta heterotetramer. Expected along with nitrogenase are several accessory proteins, the transcriptional regulator NifA, a ferredoxin or flavodoxin, downstream genes for nitrogen assimilation (NtrC, GlnA), genes for protection from oxygen (e.g. leghemoglobin in root nodule bacteria), etc. None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_181 TIGR01817 HMM None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_72581 TIGR01286 HMM None - {{∅}} False - {{f}} Unconfirmed absence
Component_225 nitrogen fixation protein None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_72593 TIGR02936 HMM None - {{∅}} False - {{f}} Unconfirmed absence
Component_226 nitrogenase molybdenum-iron cofactor biosynthesis protein None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_72578 TIGR02930 HMM None - {{∅}} False - {{f}} Unconfirmed absence
Component_51752 V-containing nitrogenase, alpha subunit None - {{∅}} False - {{f}} Unconfirmed absence
Evidence_72582 TIGR02932 HMM None - {{∅}} False - {{f}} Unconfirmed absence