All the versions of this article:
1: What is the public project for sequencing the human genome?
2: Has the human genome been completely sequenced?
3: How many genes do humans have?
4: Why is it so difficult to find the genes in a human genome sequence?
5: Where did the sequenced human DNA come from?
6: Is the human genome “freely available”? If not, who owns it?
7: Why was there a Human Genome Project What is its use?
8: Who were the members of the international consortium What was the role of each of them?
9: What was the French contribution to the Human Genome Project?
10: How much did the Human Genome Project cost?
11: With the end of the Human Genome Project, are the large sequencing centers still useful?
The international consortium for the sequencing of the human genome included 20 sequencing centers in six countries (Germany, China, United States, France, Japan, United Kingdom). Here is the list:
| Abbreviation | Center |
|---|---|
| BCM | Human Genome Sequencing Center / Baylor College of Medicine, Houston (Texas) ; USA |
| Beijing | Human Genome Center / Beijing Genomics Institute, Académie chinoise des sciences, Beijing ; China |
| CSHL | Lita Annenberg Hazen Genome Center / Cold Spring Harbor Laboratory, Cold Spring Harbor (N.Y.), USA |
| GBF | Gesellschaft fur Biotechnologische Forschung mbH, Braunschweig ; Germany |
| GS | Genoscope, Evry ; France |
| GTC | GTC Sequencing Center / Genome Therapeutics Corp., Waltham (Mass.) ; USA |
| IMB | Department of Genome Analysis / Institute of Molecular Biotechnology, Jena ; Germany |
| JGI | Joint Genome Institute / U.S. Department of Energy, Walnut Creek (Calif.) ; USA |
| Keio | Département de biologie moléculaire / Ecole de médecine de l’université Keio, Tokyo ; Japan |
| MPIMG | Max Planck Institute for Molecular Genetics, Berlin ; Germany |
| MSC | Multimegabase Sequencing Center / The Institute for Systems Biology, Seattle (Wash.) ; USA |
| RIKEN | RIKEN Genomic Sciences Center, Yokohama ; Japan |
| SC | The Wellcome Trust Sanger Institute (Sanger Center), Hinxton ; UK |
| SGTC | Stanford Genome Technology Center, Stanford (Calif.) ; USA |
| SHGC | Stanford Human Genome Center, Stanford (Calif.) ; USA |
| UOACGT | University of Oklahoma / Advanced Center for Genome Technology, Norman (Okla.), USA |
| UTSW | University of Texas / Southwestern Medical Center, Dallas (Tex.) ; USA (this center is no longer active) |
| UWGC | University of Washington Genome Center, Seattle (Wash.) ; USA |
| WI (now the Broad Institute) | Whitehead Institute / MIT Center for Genome Research, Cambridge (Mass.) ; USA |
| WUGSC | Washington University / Genome Sequencing Center, St Louis (Mo.) ; USA |
Other institutes and sequencing centers, although there were not officially part of the consortium, also contributed in a substantial manner to the sequencing effort for the human genome. Here are some of the most important contributors:
| CGM | Center for Genetics in Medicine (Perkin Elmer/Washinton Univ.) St Louis (Mo.) ; USA (ce centre n’est plus en activité) |
| JST | Japan Science and Technology Corporation (teams under contract to the Japanese Cancer Research Foundation (JFCR) and to Keio, Kitasato et Tokai Universities, Japan) ; Japan |
| TIGR | The Institute for Genomic Research, Rockville (Maryland) ; USA |
| YMGC | The National Yang Ming University Genome Center, Taipei ; Taiwan |
Finally, three institutions played a crucial role in the project in terms of bioinformatics:
| NCBI | Center for Biotechnology Information aux National Institutes of Health, USA |
| EBI | European Bioinformatics Institute, Cambridge, UK |
| UCSC | University of California at Santa Cruz, USA |
With its neighbor, the Sanger Institute, the EBI created the Ensembl (e!) project, which performs an automatic search for genes in a sequence of the human genome and permits “navigation” over the length of this “annotated” sequence. UCSC has developed a similar navigator.
The centers which participated in the sequencing of the human genome selected chromosomes or chromosomal regions of different sizes, depending on their capacity. Their respective contributions (measured as percentage of non-redundant finished sequence present in the databases at the beginning of 2003) are shown below:
The contributions of the 6 countries implicated in the project are the following:
| Country | Contribution |
|---|---|
| United States | 60.8 % |
| United Kingdom | 28.9 % |
| Japan | 4.9 % |
| France | 2.8 % |
| Germany | 1.5 % |
| China | 0.7 % |