Publications of 2008

Aghaie A, Lechaplais C, Sirven P, Tricot S, Besnard-Gonnet M, Muselet D, de Berardinis V, Kreimeyer A, Gyapay G, Salanoubat M, Perret A.
  « New insights into the alternative D-glucarate degradation pathway »
  Journal of Biological Chemistry. 2008 June 6 ; 283(23):15638-15646 .

Amadou C, Pascal G, Mangenot S, Glew M, Bontemps C, Capela D, Carrere S, Cruveiller S, Dossat C, Lajus A, Marchetti M, Poinsot V, Rouy Z, Servin B, Saad M, Schenowitz C, Barbe V, Batut J, Medigue C, Masson-Boivin C.
  « Genome sequence of the beta-rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia »
  Genome Research. 2008 May 20 ; doi:10.1101/gr.076448.108 .

Baati H, Guermazi S, Amdouni R, Gharsallah N, Sghir A, Ammar E.
  « Prokaryotic diversity of a Tunisian multipond solar saltern »
  Extremophiles. 2008 Feb 25 ; doi:10.1007/s00792-008-0154-x .

Belkorchia A, Biderre C, Militon C, Polonais V, Wincker P, Jubin C, Delbac F, Peyretaillade E, Peyret P.
  «  In vitro propagation of the microsporidian pathogen Brachiola algerae and studies of its chromosome and ribosomal DNA organization in the context of the complete genome sequencing project »
  Parasitology International. 2008 Mar ; 57(1):62-71.

Bertin PN, Médigue C, Normand P.
  « Advances in environmental genomics : towards an integrated view of micro-organisms and ecosystems »
  Microbiology. 2008 Feb ; 154(2):347-359.

Bezier A, Herbiniere J, Serbielle C, Lesobre J, Wincker P, Huguet E, Drezen JM. 
  « Bracovirus gene products are highly divergent from insect proteins »
  Archives of Insect Biochemistry and Physiology. 2008 Apr ; 67(4):172-87.

Boyer M, Haurat J, Samain S, Segurens B, Gavory F, Gonzalez V, Mavingui P, Rohr R, Bally R, Wisniewski-Dyé F.
  « Bacteriophage prevalence in the genus Azospirillum ans analysis of the first genome sequence of an Azospirillum brasilense integrative phage »
  Applied and Environmental Microbiology. 2008 Feb ; 74(3):861-874.

The Phaeodactylum genome reveals the evolutionary history of diatom genomes.

Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, Maheswari U, Martens C, Maumus F, Otillar RP, Rayko E, Salamov A, Vandepoele K, Beszteri B, Gruber A, Heijde M, *Katinka M*, Mock T, Valentin K, Verret F, Berges JA, Brownlee C, Cadoret JP, Chiovitti A, Choi CJ, Coesel S, De Martino A, Detter JC, Durkin C, Falciatore A, Fournet J, Haruta M, Huysman MJ, Jenkins BD, Jiroutova K, Jorgensen RE, Joubert Y, Kaplan A, Kröger N, Kroth PG, La Roche J, Lindquist E, Lommer M, Martin-Jézéquel V, Lopez PJ, Lucas S, Mangogna M, McGinnis K, Medlin LK, Montsant A, Oudot-Le Secq MP, Napoli C, Obornik M, Parker MS, *Petit JL, Porcel BM*, Poulsen N, Robison M, Rychlewski L, Rynearson TA, Schmutz J, Shapiro H, Siaut M, Stanley M, Sussman MR, Taylor AR, Vardi A, von Dassow P, Vyverman W, Willis A, Wyrwicz LS, Rokhsar DS, *Weissenbach J*, Armbrust EV, Green BR, Van de Peer Y, Grigoriev IV.
  « The Phaeodactylum genome reveals the evolutionary history of diatom genomes »
  Nature. 2008 Nov 13 ;456(7219):239-44. Epub 2008 Oct 15.

Brochier C, Gaillard MC, Diguet E, Caudy N, Dossat C, Segurens B, Wincker P, Roze E, Caboche J, Hantraye P, Brouillet E, Elalouf JM, de Chaldée M. 
  « Quantitative gene expression profiling of mouse brain regions reveals differential transcripts conserved in man and affected in disease models »
  Physiological Genomics. 2008 Feb ; 33(2):170-179.

Chantret N, Salse J, Sabot F, Bellec A, Laubin B, Dubois I, Dossat C, Sourdille P, Joudrier P, Gautier M, Cattolico L, Beckert M, Aubourg S, Weissenbach J, Caboche M, Leroy P, Bernard M, Chalhoub B.
  « Contrasted Microcolinearity and Gene Evolution Within a Homoeologous Region of Wheat and Barley Species »
  Journal of Molecular Evolution. 2008 Feb ; 66(2):138-50.

de Berardinis V, Vallenet D, Castelli V, Besnard M, Pinet A, Cruaud C, Samair S, Lechaplais C, Gyapay G, Richez C, Durot M, Kreimeyer A, Le Fèvre F, Schächter V, Pezo V, Döring V, Scarpelli C, Médigue C, Cohen GN, Marlière P, Salanoubat M, Weissenbach J.
  « A complete collection of single-gene deletion mutants of Acinetobacter baylyi ADP1 »
  Molecular Systems Biology. 2008 March 4 ; 4:174 ; doi:10.1038/msb.2008.10.

Duret L, Cohen J, Jubin C, Dessen P, Gout JF, Mousset S, Aury JM, Jaillon O, Noel B, Arnaiz O, Betermier M, Wincker P, Meyer E, Sperling L.
  « Analysis of sequence variability in the macronuclear DNA of Paramecium tetraurelia : a somatic view of the germ line »
  Genome Research. 2008 Feb 6 ; 18(4):585-596.

Durot M, Le Fevre F, de Berardinis V, Kreimeyer A, Vallenet D, Combe C, Smidtas S, Salanoubat M, Weissenbach J, Schachter V.
  « Iterative reconstruction of a global metabolic model of Acinetobacter baylyi ADP1 using high-throughput growth phenotype and gene essentiality data »
  BMC Syst Biol. 2008 Oct 7 ;2(1):85

Froelicher Y, Dambier D, Bassene J, Costantino G, Lotfy S, Didout C, Beaumont V, Brottier P, Risterucci A, Luro F, Ollitrault P.
  « Characterization of microsatellite markers in mandarin orange (Citrus reticulata Blanco) »
  Molecular Ecology Resources. 2008 Jan ; 8(1):119-122.

Giraud T, Yockteng R, Marthey S, Chiapello H, Jonot O, Lopez-Villavicencio M, De Vienne DM, Hood ME, Refregier G, Gendrault-Jacquemard A, Wincker P, Dossat C.
  « Isolation of 60 polymorphic microsatellite loci in EST libraries of four sibling species of the phytopathogenic fungal complex Microbotryum  »
  Molecular Ecology Resources. 2008 March ; 8(2):387-392.

Jaillon O, Bouhouche K, Gout JF, Aury JM, Noel B, Saudemont B, Nowacki M, Serrano V, Porcel BM, Ségurens B, Le Mouël A, Lepère G, Schächter V, Bétermier M, Cohen J, Wincker P, Sperling L, Duret L, Meyer E.
  « Translational control of intron splicing in eukaryotes »
  Nature. 2008 Jan 17 ; 451(7176):359-62.

Lapidus A, Goltsman E, Auger S, Galleron N, Ségurens B, Dossat C, Land ML, Broussolle V, Brillard J, Guinebretiere MH, Sanchis V, Nguen-The C, Lereclus D, Richardson P, Wincker P, Weissenbach J, Ehrlich SD, Sorokin A.
  « Extending the Bacillus cereus group genomics to putative food-borne pathogens of different toxicity. »
  Chemico-Biological Interactions. 2008 Jan 30 ; 171(2):236-49.

Pelletier E, Kreimeyer A, Bocs S, Rouy Z, Gyapay G, Chouari R, Riviere D, Ganesan A, Daegelen P, Sghir A, Cohen GN, Medigue C, Weissenbach J, Le Paslier D.
  «  »Candidatus Cloacamonas acidaminovorans«  : genome sequence reconstruction provides a first glimpse of a new bacterial division »
  Journal of Bacteriology. 2008 Apr ; 190(7):2572-2579.

Picardeau M, Bulach DM, Bouchier C, Zuerner RL, Zidane N, Wilson PJ, Creno S, Kuczek ES, Bommezzadri S, Davis JC, McGrath A, Johnson MJ, Boursaux-Eude C, Seemann T, Rouy Z, Coppel RL, Rood JI, Lajus A, Davies JK, Médigue C, Adler B.
  « Genome Sequence of the Saprophyte Leptospira biflexa Provides Insights into the Evolution of Leptospira and the Pathogenesis of Leptospirosis. »
  PLoS ONE. 2008 Feb 13 ; 3(2) :e1607. doi:10.1371/journal.pone.0001607.

Tanguy A, Bierne N, Saavedra C, Pina B, Bachère E, Kube M, Bazin E, Bonhomme F, Boudry P, Boulo V, Boutet I, Cancela L, Dossat C, Favrel P, Huvet A, Jarque S, Jollivet D, Klages S, Lapègue S, Leite R, Moal J, Moraga D, Reinhardt R, Samain JF, Zouros E, Canario A.
  « Increasing genomic information in bivalves through new EST collections in four species : development of new genetic markers for environmental studies and genome evolution. »
  Gene. 2008 Jan 31 ; 408(1-2):27-36.

Terrazas M, Marlière P, Herdewijn P.
  « Enzymatically catalyzed DNA synthesis using L-Asp-dGMP, L-Asp-dCMP, and L-Asp-dTMP. »
  Chemistry & Biodiversity. 2008 Jan ; 5(1):31-9.

Vallenet D, Nordmann P, Barbe V, Poirel L, Mangenot S, Bataille E, Dossat C, Gas S, Kreimeyer A, Lenoble P, Oztas S, Poulain J, Segurens B, Robert C, Abergel C, Claverie JM, Raoult D, Médigue C, Weissenbach J, Cruveiller S.
  « Comparative analysis of Acinetobacters : three genomes for three lifestyles. »
  PLoS ONE. 2008 Mar 19 ; 3(3) :e1805.doi:10.1371/journal.pone.0001805.