Publications of 2007

Adelfinskaya, O., Terrazas, M., Froeyen, M., Marliere, P., Nauwelaerts, K. and Herdewijn.
 “Polymerase-catalysed synthesis of DNA from phosphoramidate conjugates of deoxynucleotides and amino acids”
 Nucleic Acids Research. 2007. 10.1093/nar/gkm498. In Press

Bourhy, P., Salaun, L., Lajus, A., Medigue, C., Boursaux-Eude, C. and Picardeau, M.
 “A genomic island of the pathogen Leptospira interrogans serovar Lai can excise from its chromosome”
 Infection and Immunity. 2007. 75, 677-683.

Cruveiller, S., Clay, O., Jabbari, K., and Bernardi G.
 “Simple proteomic checks for detecting noncoding RNA”
 Proteomics. 2007. 7, 361-363.

Derbise, A., Chenal-Francisque, V., Pouillot, F., Fayolle, C., Prevost, M.C., Medigue, C., Hinnebusch, B.J. and Carniel, E.
 “A horizontally acquired filamentous phage contributes to the pathogenicity of the plague bacillus”
 Molecular Microbiology. 2007. 63, 1145-1157.

Fierro, A.C., Thuret, R., Coen, L., Perron, M., Demeneix, B.A., Wegnez, M., Gyapay, G., Weissenbach, J., Wincker, P., Mazabraud, A. and Pollet, N.
 “Exploring nervous system transcriptomes during embryogenesis and metamorphosis in Xenopus tropicalis using EST analysis”
 BMC Genomics. 2007. 8, 118.

Fudal, I., Ross, S., Gout, L., Blaise, F., Kuhn, M.L., Eckert, M.R., Cattolico, L., Bernard-Samain, S., Balesdent, M.H. and Rouxel, T.
 “Heterochromatin-like regions as ecological niches for avirulence genes in the Leptosphaeria maculans genome: Map-based cloning of AvrLm6”
 Molecular Plant-Microbe Interactions. 2007. 20, 459-470

Giraud, E., Moulin, L., Vallenet, D., Barbe, V., Cytryn, E., Avarre, J.C., Jaubert, M., Simon, D., Cartieaux, F., Prin, Y., Bena, G., Hannibal, L., Fardoux, J., Kojadinovic, M., Vuillet, L., Lajus, A., Cruveiller, S., Rouy, Z., Mangenot, S., Segurens, B., Dossat, C. , Franck, W.L., Chang, W.S., Saunders, E., Bruce, D. and Richardson, P. and Normand, P., Dreyfus, B., Pignol, D., Stacey, G., Emerich, D., Vermeglio, A., Medigue, C. and Sadowsky, M.,
 “Legumes symbioses: Absence of Nod genes in photosynthetic bradyrhizobia”
 Science. 2007. 316, 1307-1312.

Itoh, T., et al.
 “Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana ”
 Genome Res. 2007. 17, 175-183.

Jaillon O., Aury J-M, Noel B., Policriti A., Clepet C.,Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., Poulain J., Bruyère C., Billault A., Segurens B., Gouyvenoux M., Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., Alaux M., di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., Moroldo M., Scalabrin,S., Canaguier A.,Le Clainche I., Malacrida G.,Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., Pè M. E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., Weissenbach J., Quétier F., Wincker P.
 “The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla”
 Nature. 2007. Vol 449, Issue 7161, pp. 463-467.

Kreimeyer, A., Perret, A., Lechaplais, C., Vallenet, D., Médigue, C., Salanoubat, M. and Weissenbach, J.
 “Identification of the last unknown genes in the fermentation pathway of lysine”
 J Biol Chem. 2007. 282, 7191-7197.

Le Fèvre, F., Smidtas, S. and Schächter, V.
 “Cyclone : Java-based querying and computing with Pathway Genome Databases”
 Bioinformatics. 2007. 23(10):1299-1300

Normand, P., Lapierre, P., Tisa, L.S., Gogarten, J.P., Alloisio, N., Bagnarol, E., Bassi, C.A., Berry, A.M., Bickhart, D.M., Choisne, N., Couloux, A., Cournoyer, B., Cruveiller, S., Daubin, V., Demange, N., Francino, M.P., Goltsman, E., Huang, Y., Kopp, O.R., Labarre, L., Lapidus, A., Lavire, C., Marechal, J., Martinez, M., Mastronunzio, J.E., Mullin, B.C., Niemann, J., Pujic, P., Rawnsley, T., Rouy, Z., Schenowitz, C., Sellstedt, A., Tavares, F., Tomkins, J.P., Vallenet, D., Valverde, C., Wall, L.G., Wang, Y., Medigue, C. and Benson, D.R.
 “Genome characteristics of facultatively symbiotic Frankia sp strains reflect host range and host plant biogeography”
 Genome Research. 2007. 17, 7-15.

Raboin, L.M., Selvi, A., Oliveira, K.M., Paulet, F., Calatayud, C., Zapater, M.F., Brottier, P., Luzaran, R., Garsmeur, O., Carlier, J. and D’Hont, A.
 “Evidence for the dispersal of a unique lineage from Asia to America and Africa in the sugarcane fungal pathogen Ustilago scitaminea ”
 Fungal Genetics and Biology. 2007. 44, 64-76.

Smidtas S, Yartseva A, Scachter V, Kepes F
 “Model of Interactions in Biology and Application to Heterogeneous Network in Yeast”
 Comptes Rendus Biologies. 2007. 329 (12) 945-952 doi:10.1016/j.crvi.2006.06.010

Snelling WM, Chiu R, Schein JE, Hobbs M, Abbey CA, Adelson DL, Aerts J, Bennett GL, Bosdet IE, Boussaha M, Brauning R, Caetano AR, Costa MM, Crawford AM, Dalrymple BP, Eggen A, Everts-van der Wind A, Floriot S, Gautier M, Gill CA, Green RD, Holt R, Jann O, Jones SJ, Kappes SM, Keele JW, de Jong PJ, Larkin DM, Lewin HA, McEwan JC, McKay S, Marra MA, Mathewson CA, Matukumalli LK, Moore SS, Murdoch B, Nicholas FW, Osoegawa K, Roy A, Salih H, Schibler L, Schnabel RD, Silveri L, Skow LC, Smith TP, Sonstegard TS, Taylor JF, Tellam R, Van Tassell CP, Williams JL, Womack JE, Wye NH, Yang G, Zhao S; International Bovine BAC Mapping Consortium.
 “A physical map of the bovine genome.”
 Genome Biology. 2007; 8(8):R165. doi:10.1016/gb-2007-8-8-r165

Terol, J., Conesa, A., Colmenero, J.M., Cercos, M., Tadeo, F., Agusti, J., Alos, E., Andres, F., Soler, G., Brumos, J., Iglesias, D.J., Gotz, S., Legaz, F., Argout, X., Courtois, B., Ollitrault, P., Dossat, C., Wincker, P., Morillon, R. and Talon, M.
 “Analysis of 13000 unique Citrus clusters associated with fruit quality, production and salinity tolerance”
 Bmc Genomics. 2007. 8, 22.

Vidal, N., Delmas, A., David, P., Cruaud, C., Couloux, A. and Hedges, S.
 “The phylogeny and classification of caenophidian snakes inferred from seven nuclear protein-coding genes”
 C R Biol. 2007. 330, 182-187.