Publications of 2004

Abel A., Fonknechten N., Hofer A., Durr A., Cruaud C., Voit T., Weissenbach J., Brice A., Klimpe S., Auburger G. and Hazan J.
 “Early onset autosomal dominant spastic paraplegia caused by novel mutations in SPG3A”
 Neurogenetics. 2004.

Barbe V., Vallenet D., Fonknechten N., Kreimeyer A., Oztas S., Labarre L., Cruveiller S., Robert C., Duprat S., Wincker P., Ornston L.N., Weissenbach J., Marlière P., Cohen G.N. and Médigue C.
 “Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium”
 Nucleic Acids Res. 2004. 32:5766-5779.

Castelli V., Aury J.M., Jaillon O., Wincker P., Clepet C., Menard M., Cruaud C., Quétier F., Scarpelli C., Schächter V., Temple G., Caboche M., Weissenbach J. and Salanoubat M.
 “Whole genome sequence comparisons and”full-length“cDNA sequences: a combined approach to evaluate and improve Arabidopsis genome annotation”
 Genome Res.. 2004. 14:406-413.

Chabrier N., Chiaverini M., Danos V., Fages F. and Schächter V.,
 “Modeling and querying biochemical interaction networks”
 Theoretical Computer Science. 2004. 325: 25-44.

Chain P.S., Carniel E., Larimer F.W., Lamerdin J., Stoutland P.O., Regala W.M., Georgescu A.M., Vergez L.M., Land M.L, Motin V.L., Brubaker R.R., Fowler J., Hinnebusch J., Marceau M., Médigue C., Simonet M., Chenal-Francisque V., Souza B., Dacheux D., Elliott J.M., Derbise A., Hauser L.J. and Garcia E.,
 “Insights into the evolution of Yersinia pestis through whole-genome comparison with Yersinia pseudotuberculosis ”
 Proc. Natl. Acad. Sci. USA. 2004. 101: 13826-31.

Duchaud E., Rusniok C., Frangeul L., Buchrieser C., Givaudan A., Taourit S., Bocs S., Boursaux-Eude C., Chandler M., Charles J.F., Dassa E., Derose R., Derzelle S., Freyssinet G., Gaudriault S., Médigue C., Lanois A., Powell K., Siguier P., Vincent R., Wingate V., Zouine M., Glaser P., Boemare N., Danchin A. and Kunst F.
 “The genome sequence of the entomopathogenic bacterium Photorhabdus luminescens ”
 Nature Biotechnology. 2003. 11: 1307-1313.

Dujon B., Sherman D., Fischer G., Durrens P., Casaregola S., Lafontaine I., De Montigny J., Marck C., Neuveglise C., Talla E., Goffard N., Frangeul L., Aigle M., Anthouard V., Babour A., Barbe V., Barnay S., Blanchin S., Beckerich J.M., Beyne E., Bleykasten C., Boisrame A., Boyer J., Cattolico L., Confanioleri F., De Daruvar A., Despons L., Fabre E., Fairhead C., Ferry-Dumazet H., Groppi A., Hantraye F., Hennequin C., Jauniaux N., Joyet P., Kachouri R., Kerrest A., Koszul R., Lemaire M., Lesur I., Ma L., Muller H., Nicaud J.M., Nikolski M., Oztas S., Ozier-Kalogeropoulos O., Pellenz S., Potier S., Richard G.F., Straub M.L., Suleau A., Swennen D., Tekaia F., Wesolowski-Louvel M., Westhof E., Wirth B., Zeniou-Meyer M., Zivanovic I., Bolotin-Fukuhara M., Thierry A., Bouchier C., Caudron B., Scarpelli C., Gaillardin C., Weissenbach J., Wincker P. and Souciet J.L.
 “Genome evolution in yeasts”
 Nature. 2004. 430:35-44.

Espagne E., Dupuy C., Huguet E., Cattolico L., Provost B., Martins N., Poirie M., Periquet G. and Drezen J.M.
 “Genome sequence of a polydnavirus: insights into symbiotic virus evolution”
 Science. 2004. 306:286-289.

Fischer C., Bouneau L., Coutanceau J.P., Weissenbach J., Volff J.N. and Ozouf-Costaz C.
  “Global heterochromatic colocalization of transposable elements with minisatellites in the compact genome of the pufferfish Tetraodon nigroviridis ”
  Gene. 2004. 336:175-183.

International Human Genome Sequencing Consortium (Heilig R., Eckenberg R., Petit J.L., Fonknechten N., Da Silva C., Cattolico L., Levy M., Barbe V., de Berardinis V., Ureta-Vidal A., Pelletier E., Vico V., Anthouard V., Artiguenave F., Robert C., Cruaud C., Brüls T., Brottier P., Ségurens B., Samain S., Crespeau H., Scarpelli C., Gyapay G., Wincker P., Saurin W., Weissenbach J. and Matsuda F. for Genoscope)
 “Finishing the euchromatic sequence of the human genome”
 Nature. 2004. 431:931-945.

Jabbari K., Cruveiller S., Clay O., Le Saux J. and Bernardi G.
 “The new genes of rice: a closer look”
 Trends Plant Sci.. 2004. 9:281-285

Jaillon O., Aury J.M., Brunet F., Petit J.L., Stange-Thomann N., Mauceli E., Bouneau L., Fischer C., Ozouf-Costaz C., Bernot A., Nicaud S., Jaffe D., Fisher S., Lutfalla G., Dossat C., Ségurens B., Da Silva C., Salanoubat M., Levy M., Boudet N., Castellano S., Anthouard V., Jubin C., Castelli V., Katinka M.D., Vacherie B., Biemont C., Skalli Z., Cattolico L., Poulain J., de Berardinis V., Cruaud C., Duprat S., Brottier P., Coutanceau J.P., Gouzy J., Parra G., Lardier G., Chapple C., McKernan K.J., McEwan P., Bosak S., Kellis M., Volff J.N., Guigo R., Zody M.C., Mesirov J., Lindblad-Toh K., Birren B., Nusbaum C., Kahn D., Robinson-Rechavi M., Laudet V., Schächter V., Quétier F., Saurin W., Scarpelli C., Wincker P., Lander E.S., Weissenbach J. and Roest Crollius H.
 “Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype”
 Nature. 2004. 431:946-957.

Penet S., Marchal R., Sghir A. and Monot F.,
 “Biodegradation of hydrocarbon cuts used for diesel oil formulation” "Appl. Microbiol. Biotechnol. 2004.

Porcel B.M., Delfour O., Castelli V., de Berardinis V., Friedlander L., Cruaud C., Ureta-Vidal A., Scarpelli C., Wincker P., Schächter V., Saurin W., Gyapay G., Salanoubat M. and Weissenbach J.
 “Numerous novel annotations of the human genome sequence supported by a 5’-end-enriched cDNA collection”
 Genome Res.. 2004. 14:463-471.

Provost B., Varricchio P., Arana E., Espagne E., Falabella P., Huguet E., La Scaleia R., Cattolico L., Poirie M., Malva C., Olszewski J.A., Pennacchio F. and Drezen J.M.
 “Bracoviruses contain a large multigene family coding for protein tyrosine phosphatases”
 J. Virol.. 2004. 78:13090-13103.

Seo H.C., Edvardsen R.B., Maeland A.D., Bjordal M., Jensen M.F., Hansen A., Flaat M., Weissenbach J., Lehrach H., Wincker P., Reinhardt R. and Chourrout D.
 “Hox cluster disintegration with persistent anteroposterior order of expression in Oikopleura dioica ”
 Nature. 2004. 431:67-71.

Weissenbach J.,
 “Genome sequencing: differences with the relatives”
  Nature. 2004. 429:353-355.

Zagulski M., Nowak J.K., Le Mouel A., Nowacki M., Migdalski A., Gromadka R., Noel B., Blanc I., Dessen P., Wincker P., Keller A.M., Cohen J., Meyer E and Sperling L.
 “High coding density on the largest Paramecium tetraurelia somatic chromosome”
 Curr. Biol.. 2004. 14:1397-1404.