Publications LABIS

2000 - 2001 - 2002 - 2003 - 2004 - 2005 - 2006 - 2007 - 2008 - 2009 - 2010

2010 J. Mark Cock, Lieven Sterck, Pierre Rouzé, Delphine Scornet, Andrew E. Allen, Grigoris Amoutzias, Veronique Anthouard, François Artiguenave, Jean-Marc Aury, Jonathan H. Badger, Bank Beszteri, Kenny Billiau, Eric Bonnet, John H. Bothwell, Chris Bowler, Catherine Boyen, Colin Brownlee, Carl J. Carrano, Bénédicte Charrier, Ga Youn Cho, Susana M. Coelho, Jonas Collén, Erwan Corre, Corinne Da Silva, Ludovic Delage, Nicolas Delaroque, Simon M. Dittami, Sylvie Doulbeau, Marek Elias, Garry Farnham, Claire M. M. Gachon, Bernhard Gschloessl, Svenja Heesch, Kamel Jabbari, Claire Jubin, Hiroshi Kawai, Kei Kimura, Bernard Kloareg, Frithjof C. Küpper, Daniel Lang, Aude Le Bail, Catherine Leblanc, Patrice Lerouge, Martin Lohr, Pascal J. Lopez, Cindy Martens, Florian Maumus, Gurvan Michel, Diego Miranda-Saavedra, Julia Morales, Hervé Moreau, Taizo Motomura, Chikako Nagasato, Carolyn A. Napoli, David R. Nelson, Pi Nyvall-Collén, Akira F. Peters, Cyril Pommier, Philippe Potin, Julie Poulain, Hadi Quesneville, Betsy Read, Stefan A. Rensing, Andrés Ritter, Sylvie Rousvoal, Manoj Samanta, Gaelle Samson, Declan C. Schroeder, Béatrice Ségurens, Martina Strittmatter, Thierry Tonon, James W. Tregear, Klaus Valentin, Peter von Dassow, Takahiro Yamagishi, Yves Van de Peer & Patrick Wincker
  « The Ectocarpus genome and the independent evolution of multicellularity in brown algae »
  Nature 2010 Jun 03 ; 465:617-621

Martin F, Kohler A, Murat C, Balestrini R, Coutinho PM, Jaillon O, Montanini B, Morin E, Noel B, Percudani R, Porcel B, Rubini A, Amicucci A, Amselem J, Anthouard V, Arcioni S, Artiguenave F, Aury JM, Ballario P, Bolchi A, Brenna A, Brun A, Buée M, Cantarel B, Chevalier G, Couloux A, Da Silva C, Denoeud F, Duplessis S, Ghignone S, Hilselberger B, Iotti M, Marçais B, Mello A, Miranda M, Pacioni G, Quesneville H, Riccioni C, Ruotolo R, Splivallo R, Stocchi V, Tisserant E, Viscomi AR, Zambonelli A, Zampieri E, Henrissat B, Lebrun MH, Paolocci F, Bonfante P, Ottonello S, Wincker P
  « Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis. »
  Nature 2010 Mar 28

Ettwig KF, Butler MK, Le Paslier D, Pelletier E, Mangenot S, Kuypers MMM, Schreiber F, Dutilh BE, Zedelius J, de Beer D, Gloerich J, Wessels HJCT, van Alen T, Luesken F, Wu ML, van de Pas-Schoonen KT, Op den Camp HJM, Janssen-Megens EM, Francoijs K, Stunnenberg H, Weissenbach J, Jetten MSM, Strous M.
  « Nitrite-driven anaerobic methane oxidation by oxygenic bacteria. »
  Nature 2010 Mar ;464(7288):543-548

Qin J, Li R, Raes J, Arumugam M, Burgdorf KS, Manichanh C, Nielsen T, Pons N, Levenez F, Yamada T, Mende DR, Li J, Xu J, Li S, Li D, Cao J, Wang B, Liang H, Zheng H, Xie Y, Tap J, Lepage P, Bertalan M, Batto J, Hansen T, Le Paslier D, Linneberg A, Nielsen HB, Pelletier E, Renault P, Sicheritz-Ponten T, Turner K, Zhu H, Yu C, Li S, Jian M, Zhou Y, Li Y, Zhang X, Li S, Qin N, Yang H, Wang J, Brunak S, Doré J, Guarner F, Kristiansen K, Pedersen O, Parkhill J, Weissenbach J, Bork P, Ehrlich SD, Wang J.
  « A human gut microbial gene catalogue established by metagenomic sequencing. »
  Nature 2010 Mar ;464(7285):59-65

Coimbra RS, Artiguenave F, Jacques LS, Oliveira GC.
  « MST - Molecular Serotyping Tool : a program for computer-assisted molecular identification of Escherichia coli and Shigella O-antigens. »
  J Clin Microbiol. 2010 Mar 3

2009

Tap J, Mondot S, Levenez F, Pelletier E, Caron C, Furet J, Ugarte E, Muñoz-Tamayo R, Paslier DLE, Nalin R, Dore J, Leclerc M.
  « Towards the human intestinal microbiota phylogenetic core. »
  Environ. Microbiol 2009 Oct ;11(10):2574-2584

Zrafi-Nouira I, Guermazi S, Chouari R, Safi NMD, Pelletier E, Bakhrouf A, Saidane-Mosbahi D, Sghir A.
  « Molecular diversity analysis and bacterial population dynamics of an adapted seawater microbiota during the degradation of Tunisian zarzatine oil. »
  Biodegradation 2009 Jul ;20(4):467-486

Rivière D, Desvignes V, Pelletier E, Chaussonnerie S, Guermazi S, Weissenbach J, Li T, Camacho P, Sghir A.
  « Towards the definition of a core of microorganisms involved in anaerobic digestion of sludge. »
  ISME J 2009 Jun ;3(6):700-714

Dittami SM, Scornet D, Petit JL, Ségurens B, Da Silva C, Corre E, Dondrup M, Glatting KH, König R, Sterck L, Rouzé P, Van de Peer Y, Cock JM, Boyen C and Tonon T.
  « Global expression analysis of the brown alga Ectocarpus siliculosus (Phaeophyceae) reveals large-scale reprogramming of the transcriptome in response to abiotic stress »
  Genome Biology 2009, june 16 10 :R66doi:10.1186/gb-2009-10-6-r66

Souciet JL, Dujon B, Gaillardin C, Johnston M, Baret PV, Cliften P, Sherman DJ, Weissenbach J, Westhof E, Wincker P, Jubin C, Poulain J, Barbe V, Segurence B, Artiguenave F, Anthouard V, Vacherie B, Val ME, Fulton RS, Minx P, Wilson R, Durrens P, Jean G, Marck C, Martin T, Nikolski M, Rolland T, Seret ML, Casaregola S, Despons L, Fairhead C, Fischer G, Lafontaine I, Leh V, Lemaire M, de Montigny J, Neuveglise C, Thierry A, Blanc-Lenfle I, Bleykasten C, Diffels J, Fritsch E, Frangeul L, Goeffon A, Jauniaux N, Kachouri-Lafond R, Payen C, Potier S, Pribylova L, Ozanne C, Richard GF, Sacerdot C, Straub ML, Talla E.
  « Comparative genomics of protoploid Saccharomycetaceae. »
  Genome Res. 2009 Jun 12. Epub ahead of print

Florent I, Porcel BM, Guillaume E, Da Silva C, Artiguenave F, Maréchal E, Bréhélin L, Gascuel O, Charneau S, Wincker P, Grellier P.
  « A Plasmodium falciparum FcB1-schizont-EST collection providing clues to schizont specific gene structure and polymorphism. »
  BMC Genomics. 2009 May 19 ;10:235.

Guérin A, d’Aubenton-Carafa Y, Marrakchi E, Da Silva C, Wincker P, Mazan S, Rétaux S.
  « Neurodevelopment genes in lampreys reveal trends for forebrain evolution in craniates. »
  PLoS One. 2009 ;4(4) :e5374. Epub 2009 Apr 28.

Philippe H, Derelle R, Lopez P, Pick K, Borchiellini C, Boury-Esnault N, Vacelet J, Renard E, Houliston E, Quéinnec E, Da Silva C, Wincker P, Le Guyader H, Leys S, Jackson DJ, Schreiber F, Erpenbeck D, Morgenstern B, Wörheide G, Manuel M.
  « Phylogenomics revives traditional views on deep animal relationships. »
  Curr Biol. 2009 Apr 28 ;19(8):706-12. Epub 2009 Apr 2.

Jaillon O, Aury JM, Wincker P.
  « « Changing by doubling », the impact of Whole Genome Duplications in the evolution of eukaryotes. »
  C R Biol. 2009 Feb-Mar ;332(2-3):241-53. Epub 2008 Nov 29. Review.

Chiori R, Jager M, Denker E, Wincker P, Da Silva C, Le Guyader H, Manuel M, Quéinnec E.
  « Are Hox genes ancestrally involved in axial patterning ? Evidence from the hydrozoan Clytia hemisphaerica (Cnidaria). »
  PLoS One. 2009 ;4(1) :e4231. Epub 2009 Jan 21.

2008

Aury JM, Cruaud C, Barbe V, Rogier O, Mangenot S, Samson G, Poulain J, Anthouard V, Scarpelli C, Artiguenave F, Wincker P.
  « High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies. »
  BMC Genomics. 2008 Dec 16 ;9:603.

Denoeud F, Aury JM, Da Silva C, Noel B, Rogier O, Delledonne M, Morgante M, Valle G, Wincker P, Scarpelli C, Jaillon O, Artiguenave F.
  « Annotating genomes with massive-scale RNA sequencing. »
  Genome Biol. 2008 ;9(12) :R175. Epub 2008 Dec 16.

Argout X, Fouet O, Wincker P, Gramacho K, Legavre T, Sabau X, Risterucci AM, Da Silva C, Cascardo J, Allegre M, Kuhn D, Verica J, Courtois B, Loor G, Babin R, Sounigo O, Ducamp M, Guiltinan MJ, Ruiz M, Alemanno L, Machado R, Phillips W, Schnell R, Gilmour M, Rosenquist E, Butler D, Maximova S and Lanaud C.
  « Towards the understanding of the cocoa transcriptome : Production and analysis of an exhaustive dataset of ESTs of Theobroma cacao L. generated from various tissues and under various conditions »
  BMC Genomics 2008, october 30 9:512doi:10.1186/1471-2164-9-512

Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, Maheswari U, Martens C, Maumus F, Otillar RP, Rayko E, Salamov A, Vandepoele K, Beszteri B, Gruber A, Heijde M, Katinka M, Mock T, Valentin K, Verret F, Berges JA, Brownlee C, Cadoret JP, Chiovitti A, Choi CJ, Coesel S, De Martino A, Detter JC, Durkin C, Falciatore A, Fournet J, Haruta M, Huysman MJ, Jenkins BD, Jiroutova K, Jorgensen RE, Joubert Y, Kaplan A, Kröger N, Kroth PG, La Roche J, Lindquist E, Lommer M, Martin-Jézéquel V, Lopez PJ, Lucas S, Mangogna M, McGinnis K, Medlin LK, Montsant A, Oudot-Le Secq MP, Napoli C, Obornik M, Parker MS, Petit JL, Porcel BM, Poulsen N, Robison M, Rychlewski L, Rynearson TA, Schmutz J, Shapiro H, Siaut M, Stanley M, Sussman MR, Taylor AR, Vardi A, von Dassow P, Vyverman W, Willis A, Wyrwicz LS, Rokhsar DS, Weissenbach J, Armbrust EV, Green BR, Van de Peer Y, Grigoriev IV.
  « The Phaeodactylum genome reveals the evolutionary history of diatom genomes. »
  Nature. 2008 Nov 13 ;456(7219):239-44. Epub 2008 Oct 15.

Maixner F, Wagner M, Lücker S, Pelletier E, Schmitz-Esser S, Hace K, Spieck E, Konrat R, Le Paslier D, Daims H.
  « Environmental genomics reveals a functional chlorite dismutase in the nitrite-oxidizing bacterium ’Candidatus Nitrospira defluvii’. »
  Environ Microbiol. 2008 Nov ;10(11):3043-56. Epub 2008 May 5.

Ganesan A, Chaussonnerie S, Tarrade A, Dauga C, Bouchez T, Pelletier E, Le Paslier D, Sghir A.
  « Cloacibacillus evryensis gen. nov., sp. nov., a novel asaccharolytic, mesophilic, amino-acid-degrading bacterium within the phylum ’Synergistetes’, isolated from an anaerobic sludge digester. »
  Int J Syst Evol Microbiol. 2008 Sep ;58(Pt 9):2003-12.

Guermazi S, Daegelen P, Dauga C, Rivière D, Bouchez T, Godon JJ, Gyapay G, Sghir A, Pelletier E, Weissenbach J, Le Paslier D.
  « Discovery and characterization of a new bacterial candidate division by an anaerobic sludge digester metagenomic approach. »
  Environ Microbiol. 2008 Aug ;10(8):2111-23. Epub 2008 May 6.

Abad P, Gouzy J, Aury JM, Castagnone-Sereno P, Danchin EG, Deleury E, Perfus-Barbeoch L, Anthouard V, Artiguenave F, Blok VC, Caillaud MC, Coutinho PM, Dasilva C, De Luca F, Deau F, Esquibet M, Flutre T, Goldstone JV, Hamamouch N, Hewezi T, Jaillon O, Jubin C, Leonetti P, Magliano M, Maier TR, Markov GV, McVeigh P, Pesole G, Poulain J, Robinson-Rechavi M, Sallet E, Ségurens B, Steinbach D, Tytgat T, Ugarte E, van Ghelder C, Veronico P, Baum TJ, Blaxter M, Bleve-Zacheo T, Davis EL, Ewbank JJ, Favery B, Grenier E, Henrissat B, Jones JT, Laudet V, Maule AG, Quesneville H, Rosso MN, Schiex T, Smant G, Weissenbach J, Wincker P.
  « Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita. »
  Nat Biotechnol. 2008 Aug ;26(8):909-15. Epub 2008 Jul 27.

Espagne E, Lespinet O, Malagnac F, Da Silva C, Jaillon O, Porcel BM, Couloux A, Aury JM, Ségurens B, Poulain J, Anthouard V, Grossetete S, Khalili H, Coppin E, Déquard-Chablat M, Picard M, Contamine V, Arnaise S, Bourdais A, Berteaux-Lecellier V, Gautheret D, de Vries RP, Battaglia E, Coutinho PM, Danchin EG, Henrissat B, Khoury RE, Sainsard-Chanet A, Boivin A, Pinan-Lucarré B, Sellem CH, Debuchy R, Wincker P, Weissenbach J, Silar P.
  « The genome sequence of the model ascomycete fungus Podospora anserina. »
  Genome Biol. 2008 ;9(5) :R77. Epub 2008 May 6.

Duret L, Cohen J, Jubin C, Dessen P, Goût JF, Mousset S, Aury JM, Jaillon O, Noël B, Arnaiz O, Bétermier M, Wincker P, Meyer E, Sperling L.
  « Analysis of sequence variability in the macronuclear DNA of Paramecium tetraurelia : a somatic view of the germline. »
  Genome Res. 2008 Apr ;18(4):585-96. Epub 2008 Feb 6.

Pelletier E, Kreimeyer A, Bocs S, Rouy Z, Gyapay G, Chouari R, Rivière D, Ganesan A, Daegelen P, Sghir A, Cohen GN, Médigue C, Weissenbach J, Le Paslier D.
  « « Candidatus Cloacamonas acidaminovorans » : genome sequence reconstruction provides a first glimpse of a new bacterial division. »
  J Bacteriol. 2008 Apr ;190(7):2572-9. Epub 2008 Feb 1.

Jaillon O, Bouhouche K, Gout JF, Aury JM, Noel B, Saudemont B, Nowacki M, Serrano V, Porcel BM, Ségurens B, Le Mouël A, Lepère G, Schächter V, Bétermier M, Cohen J, Wincker P, Sperling L, Duret L, Meyer E.
  « Translational control of intron splicing in eukaryotes »
  Nature. 2008 Jan 17 ;451(7176):359-62.

2007

Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyère C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pè ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quétier F, Wincker P ; French-Italian Public Consortium for Grapevine Genome Characterization.
  « The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla »
  Nature. 2007 Sep 27 ;449(7161):463-7. Epub 2007 Aug 26.

2006

Aury J-M, Jaillon O, Duret L, Noel B, Jubin C, Porcel B, Ségurens B, Daubin V, Anthouard V, Aiach N, Arnaiz O, Billaut A, Beisson J, Blanc I, Bouhouche K, Câmara F, Duharcourt S, Guigo R, Gogendeau D, Katinka M, Keller A-M, Kissmehl R, Klotz C, Koll F, Le Mouël A, Lepère G, Malinsky S, Nowacki M, Nowak J K, Plattner H, Poulain J, Ruiz F, Serrano V, Zagulski M, Dessen P, Bétermier M, Weissenbach J, Scarpelli C, Schächter V, Sperling L, Meyer E, Cohen J & Wincker P.
  "Global trends of whole genome duplications revealed by the genome sequence of the ciliate Paramecium tetraurelia "
  Nature 444, 171-178 (9 November 2006)

Brunet FG, Crollius HR, Paris M, Aury JM, Gibert P, Jaillon O, Laudet V, Robinson-Rechavi M.
  "Gene loss and evolutionary rates following whole-genome duplication in teleost fishes"
  Mol Biol Evol. (2006) Sep 23(9):1808-16. Epub 2006 Jun 29.

Strous M, Pelletier E, Mangenot S, Rattei T, Lehner A, Taylor MW, Horn M, Daims H, Bartol-Mavel D, Wincker P, Barbe V, Fonknechten N, Vallenet D, Segurens B, Schenowitz-Truong C, Médigue C, Collingro A, Snel B, Dutilh BE, Op den Camp HJ, van der Drift C, Cirpus I, van de Pas-Schoonen KT, Harhangi HR, van Niftrik L, Schmid M, Keltjens J, van de Vossenberg J, Kartal B, Meier H, Frishman D, Huynen MA, Mewes HW, Weissenbach J, Jetten MS, Wagner M, Le Paslier D.
  « Deciphering the evolution and metabolism of an anammox bacterium from a community genome. »
  Nature. 2006 Apr 6 ;440(7085):790-4.

Manichanh C, Rigottier-Gois L, Bonnaud E, Gloux K, Pelletier E, Frangeul L, Nalin R, Jarrin C, Chardon P, Marteau P, Roca J, Dore J.
  « Reduced diversity of faecal microbiota in Crohn’s disease revealed by a metagenomic approach »
  Gut. 2006 Feb ;55(2):205-11. Epub 2005 Sep 27.

2005

Rice Chromosomes 11 and 12 Sequencing Consortia.
  « The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. »
  BMC Biol. 2005 Sep 27 ;3:20.

International Rice Genome Sequencing Project.
  « The map-based sequence of the rice genome. »
  Nature. 2005 Aug 11 ;436(7052):793-800.

Eiglmeier K, Wincker P, Cattolico L, Anthouard V, Holm I, Eckenberg R, Quesneville H, Jaillon O, Collins FH, Weissenbach J, Brey PT, Roth CW
  "Comparative analysis of BAC and whole genome shotgun sequences from an Anopheles gambiae region related to Plasmodium encapsulation"

  Insect Biochem Mol Biol. (2005) Aug 35(8):799-814. Epub 2005 Apr 12.

2004

Jaillon O, Aury JM, Brunet F, Petit JL, Stange-Thomann N, Mauceli E, Bouneau L, Fischer C, Ozouf-Costaz C, Bernot A, Nicaud S, Jaffe D, Fisher S, Lutfalla G, Dossat C, Segurens B, Dasilva C, Salanoubat M, Levy M, Boudet N, Castellano S, Anthouard V, Jubin C, Castelli V, Katinka M, Vacherie B, Biemont C, Skalli Z, Cattolico L, Poulain J, De Berardinis V, Cruaud C, Duprat S, Brottier P, Coutanceau JP, Gouzy J, Parra G, Lardier G, Chapple C, McKernan KJ, McEwan P, Bosak S, Kellis M, Volff JN, Guigo R, Zody MC, Mesirov J, Lindblad-Toh K, Birren B, Nusbaum C, Kahn D, Robinson-Rechavi M, Laudet V, Schachter V, Quetier F, Saurin W, Scarpelli C, Wincker P, Lander ES, Weissenbach J, Roest Crollius H.
  "Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype"
  Nature. (2004) Oct 21 ;431(7011):946-57.

Porcel BM, Delfour O, Castelli V, De Berardinis V, Friedlander L, Cruaud C, Ureta-Vidal A, Scarpelli C, Wincker P, Schächter V, Saurin W, Gyapay G, Salanoubat M, Weissenbach J.
  « Numerous novel annotations of the human genome sequence supported by a 5’-end-enriched cDNA collection. »
  Genome Res. 2004 Mar ;14(3):463-71. Epub 2004 Feb 12.

2003

Jaillon O, Aury JM, Roest Crollius H, Salanoubat M, Wincker P, Dossat C, Castelli V, Boudet N, Samair S, Eckenberg R, Bonneval S, Saurin W, Scarpelli C, Schachter V, Weissenbach J.
  "Genome-wide analyses based on comparative genomics"
  Cold Spring Harb Symp Quant Biol. (2003) 68:275-82. No abstract available.

Castelli V, Aury JM, Jaillon O, Wincker P, Clepet C, Menard M, Cruaud C, Quetier F, Scarpelli C, Schachter V, Temple G, Caboche M, Weissenbach J, Salanoubat M.
  "Whole genome sequence comparisons and "full-length" cDNA sequences : a combined approach to evaluate and improve Arabidopsis genome annotation"
  Genome Res. (2004) Mar 14(3):406-13.

Lutfalla G, Roest Crollius H, Stange-Thomann N, Jaillon O, Mogensen K, Monneron D.
  "Comparative genomic analysis reveals independent expansion of a lineage-specific gene family in vertebrates : the class II cytokine receptors and their ligands in mammals and fish" BMC Genomics. (2003) Jul 17 ;4(1):29.

Jaillon O, Dossat C, Eckenberg R, Eiglmeier K, Segurens B, Aury JM, Roth CW, Scarpelli C, Brey PT, Weissenbach J, Wincker P.
  "Assessing the Drosophila melanogaster and Anopheles gambiae genome annotations using genome-wide sequence comparisons"
  Genome Res. (2003) Jul 13(7):1595-9.

Bouneau L, Fischer C, Ozouf-Costaz C, Froschauer A, Jaillon O, Coutanceau JP, Korting C, Weissenbach J, Bernot A, Volff JN.
  "An active non-LTR retrotransposon with tandem structure in the compact genome of the pufferfish Tetraodon nigroviridis "
  Genome Res. (2003) Jul 13(7):1686-95. Epub 2003 Jun 12.

Heilig R, Eckenberg R, Petit JL, Fonknechten N, Da Silva C, Cattolico L, Levy M, Barbe V, de Berardinis V, Ureta-Vidal A, Pelletier E, Vico V, Anthouard V, Rowen L, Madan A, Qin S, Sun H, Du H, Pepin K, Artiguenave F, Robert C, Cruaud C, Bruls T, Jaillon O, Friedlander L, Samson G, Brottier P, Cure S, Segurens B, Aniere F, Samain S, Crespeau H, Abbasi N, Aiach N, Boscus D, Dickhoff R, Dors M, Dubois I, Friedman C, Gouyvenoux M, James R, Madan A, Mairey-Estrada B, Mangenot S, Martins N, Menard M, Oztas S, Ratcliffe A, Shaffer T, Trask B, Vacherie B, Bellemere C, Belser C, Besnard-Gonnet M, Bartol-Mavel D, Boutard M, Briez-Silla S, Combette S, Dufosse-Laurent V, Ferron C, Lechaplais C, Louesse C, Muselet D, Magdelenat G, Pateau E, Petit E, Sirvain-Trukniewicz P, Trybou A, Vega-Czarny N, Bataille E, Bluet E, Bordelais I, Dubois M, Dumont C, Guerin T, Haffray S, Hammadi R, Muanga J, Pellouin V, Robert D, Wunderle E, Gauguet G, Roy A, Sainte-Marthe L, Verdier J, Verdier-Discala C, Hillier L, Fulton L, McPherson J, Matsuda F, Wilson R, Scarpelli C, Gyapay G, Wincker P, Saurin W, Quetier F, Waterston R, Hood L, Weissenbach J.
  "The DNA sequence and analysis of human chromosome 14"

  Nature. (2003) Feb 6 ;421(6923):601-7. Epub 2003 Jan 1.

2002

Journet EP, van Tuinen D, Gouzy J, Crespeau H, Carreau V, Farmer MJ, Niebel A, Schiex T, Jaillon O, Chatagnier O, Godiard L, Micheli F, Kahn D, Gianinazzi-Pearson V, Gamas P.
  "Exploring root symbiotic programs in the model legume Medicago truncatula using EST analysis"
  Nucleic Acids Res. (2002) Dec 15 ;30(24):5579-92. Erratum in : Nucleic Acids Res. 2003 Mar 15 ;31(6):1803.

Dasilva C, Hadji H, Ozouf-Costaz C, Nicaud S, Jaillon O, Weissenbach J, Roest Crollius H.
  "Remarkable compartmentalization of transposable elements and pseudogenes in the heterochromatin of the Tetraodon nigroviridis genome"
  Proc Natl Acad Sci U S A. (2002) Oct 15 ;99(21):13636-41. Epub 2002 Oct 4.

Holt RA, Subramanian GM, Halpern A, Sutton GG, Charlab R, Nusskern DR, Wincker P, Clark AG, Ribeiro JM, Wides R, Salzberg SL, Loftus B, Yandell M, Majoros WH, Rusch DB, Lai Z, Kraft CL, Abril JF, Anthouard V, Arensburger P, Atkinson PW, Baden H, de Berardinis V, Baldwin D, Benes V, Biedler J, Blass C, Bolanos R, Boscus D, Barnstead M, Cai S, Center A, Chaturverdi K, Christophides GK, Chrystal MA, Clamp M, Cravchik A, Curwen V, Dana A, Delcher A, Dew I, Evans CA, Flanigan M, Grundschober-Freimoser A, Friedli L, Gu Z, Guan P, Guigo R, Hillenmeyer ME, Hladun SL, Hogan JR, Hong YS, Hoover J, Jaillon O, Ke Z, Kodira C, Kokoza E, Koutsos A, Letunic I, Levitsky A, Liang Y, Lin JJ, Lobo NF, Lopez JR, Malek JA, McIntosh TC, Meister S, Miller J, Mobarry C, Mongin E, Murphy SD, O’Brochta DA, Pfannkoch C, Qi R, Regier MA, Remington K, Shao H, Sharakhova MV, Sitter CD, Shetty J, Smith TJ, Strong R, Sun J, Thomasova D, Ton LQ, Topalis P, Tu Z, Unger MF, Walenz B, Wang A, Wang J, Wang M, Wang X, Woodford KJ, Wortman JR, Wu M, Yao A, Zdobnov EM, Zhang H, Zhao Q, Zhao S, Zhu SC, Zhimulev I, Coluzzi M, della Torre A, Roth CW, Louis C, Kalush F, Mural RJ, Myers EW, Adams MD, Smith HO, Broder S, Gardner MJ, Fraser CM, Birney E, Bork P, Brey PT, Venter JC, Weissenbach J, Kafatos FC, Collins FH, Hoffman SL.
  "The genome sequence of the malaria mosquito Anopheles gambiae "
  Science. (2002) Oct 4 ;298(5591):129-49.

Grutzner F, Roest Crollius H, Lutjens G, Jaillon O, Weissenbach J, Ropers HH, Haaf T.
  "Four-hundred million years of conserved synteny of human Xp and Xq genes on three Tetraodon chromosomes"
  Genome Res. (2002) Sep 12(9):1316-22.

Roest Crollius H, Jaillon O, Bernot A, Pelletier E, Dasilva C, Bouneau L, Burge C, Yeh RF, Quetier F, Saurin W, Weissenbach J.
  "Genome-wide comparisons between human and Tetraodon "
  Ernst Schering Res Found Workshop. (2002)(36):11-29. No abstract available.

2001

Charlier C, Segers K, Wagenaar D, Karim L, Berghmans S, Jaillon O, Shay T, Weissenbach J, Cockett N, Gyapay G, Georges M.
  "Human-ovine comparative sequencing of a 250-kb imprinted domain encompassing the callipyge (clpg) locus and identification of six imprinted transcripts : DLK1, DAT, GTL2, PEG11, antiPEG11, and MEG8"
  Genome Res. (2001) May 11(5):850-62.

Bolotin A, Wincker P, Mauger S, Jaillon O, Malarme K, Weissenbach J, Ehrlich SD, Sorokin A.
  "The complete genome sequence of the lactic acid bacterium Lactococcus lactis ssp. lactis IL1403"
  Genome Res. (2001) May 11(5):731-53.

2000

Roest Crollius H, Jaillon O, Dasilva C, Ozouf-Costaz C, Fizames C, Fischer C, Bouneau L, Billault A, Quetier F, Saurin W, Bernot A, Weissenbach J.
  "Characterization and repeat analysis of the compact genome of the freshwater pufferfish Tetraodon nigroviridis "
  Genome Res. (2000) Jul 10(7):939-49.

Roest Crollius H, Jaillon O, Bernot A, Dasilva C, Bouneau L, Fischer C, Fizames C, Wincker P, Brottier P, Quetier F, Saurin W, Weissenbach J.
  "Estimate of human gene number provided by genome-wide analysis using Tetraodon nigroviridis DNA sequence"
  Nat Genet. (2000) Jun 25(2):235-8.

Fischer C, Ozouf-Costaz C, Roest Crollius H, Dasilva C, Jaillon O, Bouneau L, Bonillo C, Weissenbach J, Bernot A.
  "Karyotype and chromosome location of characteristic tandem repeats in the pufferfish Tetraodon nigroviridis "
  Cytogenet Cell Genet. (2000) 88(1-2):50-5.

Scimeca JC, Franchi A, Trojani C, Parrinello H, Grosgeorge J, Robert C, Jaillon O, Poirier C, Gaudray P, Carle GF.
  "The gene encoding the mouse homologue of the human osteoclast-specific 116-kDa V-ATPase subunit bears a deletion in osteosclerotic (oc/oc) mutants"
  Bone. (2000) Mar 26(3):207-13.