Publications

2012
  « Thermostable Transketolase from Geobacillus stearothermophilus :Characterization and Catalytic Properties ».
  Abdoul Zabar, J., Sorel, I., Helaine, V., Charmantray, F., Devamani, T., Yi, D., de Berardinis, V., Louis, D., Marliere, P., Fessner, W.D., and Hecquet, L.
  Adv. Synth. Catal (in press)

  "FSAB : A new fructose-6-phosphate aldolase from Escherichia coli. Cloning, over-expression and comparative kinetic characterization with FSAA"
  Sánchez-Moreno, I., Nauton, L., Théry V., Pinet A., Petit, JL., de Berardinis, V., Samland A., Guérard-Hélaine C., Lemaire, M.
  Journal of Molecular Catalysis B : Enzymatic (84) p 9–14
 

2011
  « Biocatalysis, bioconversion and white technology : tools from the living world for chemistry »
  Zaparucha, A., de Berardinis, V. and Weissenbach, J.
  l’actualité chimique, 2011, juin-juillet-août, n° 353-354.
 

  Other Genoscope publications involving V. de Berardinis

2012

« Microbial urate catabolism : characterization of HpyO, a non-homologous isofunctional isoform of the flavoprotein urate hydroxylase HpxO. »
  Michiel, M., Perchat, N., Perret, A., Tricot, S., Papeil, A., Besnard, M., De Berardinis, V., Salanoubat, M. , Fischer, C.
  Environmental Microbiology (2012) 4(6), 642–647

« Surface-associated motility, a common trait of clinical isolates of Acinetobacter baumannii, depends on 1,3-diaminopropane »
  Skiebe, E., de Berardinis, V., Morczinek, P., Kerrinnes, T., Faber, F., Lepka, D., Hammer, B., Zimmermann, O., Ziesing, S., Wichelhaus, T., Hunfeld, KP., Borgmann, S., Gröbner, S., Higgins, P., Seifert, H., Busse, HJ., Witte, W., Pfeifer, Y. and Wilharm, G.
  Int J Med Microbiol. 2012 Jul ;302(3):117-28

2011

« Salt adaptation in Acinetobacter baylyi : identification and characterization of a secondary glycine betaine transporter. »
  Sand, M., de Berardinis, V., Mingote, A., Santos, H., Gottig, S., Muller, V. and Averhoff, B.
  Arch Microbiol. 2011. 193, 723-30

2009

« Acinetobacter baylyi ADP1 as a model for metabolic system biology. »
  de Berardinis, V., Durot, M., Weissenbach, J. & Salanoubat, M.
  Current Opinion in Microbiology. 2009. 12, 568-576.

2008

« A complete collection of single-gene deletion mutants of Acinetobacter baylyi ADP1 »
  Véronique de Berardinis, David Vallenet, Vanina Castelli, Marielle Besnard, Agnès Pinet, Corinne Cruaud, Sumitta Samair, Christophe Lechaplais, Gabor Gyapay, Céline Richez, Maxime Durot, Annett Kreimeyer, François Le Fèvre, Vincent Schächter, Valérie Pezo, Volker Döring, Claude Scarpelli, Claudine Médigue, Georges N. Cohen, Philippe Marlière, Marcel Salanoubat, Jean Weissenbach.
  Molecular Systems Biology 4 Article number : 174 doi:10.1038/msb.2008.10

« New insights into the alternative D-glucarate degradation pathway. »
  Aghaie A, Lechaplais C, Sirven P, Tricot S, Besnard-Gonnet M, Muselet D, de Berardinis V, Kreimeyer A, Gyapay G, Salanoubat M, Perret A.
  J Biol Chem. 2008 Jun 6 ;283(23):15638-46. Epub 2008 Mar 25.

« Iterative reconstruction of a global metabolic model of Acinetobacter baylyi ADP1 using high-throughput growth phenotype and gene essentiality data. »
  Durot M, Le Fèvre F, de Berardinis V, Kreimeyer A, Vallenet D, Combe C, Smidtas S, Salanoubat M, Weissenbach J, Schachter V.
  BMC Syst Biol. 2008 Oct 7 ;2:85.

« A physical map of the heterozygous grapevine ’Cabernet Sauvignon’ allows mapping candidate genes for disease resistance. »
  Moroldo M, Paillard S, Marconi R, Fabrice L, Canaguier A, Cruaud C, De Berardinis V, Guichard C, Brunaud V, Le Clainche I, Scalabrin S, Testolin R, Di Gaspero G, Morgante M, Adam-Blondon AF.
  BMC Plant Biol. 2008 Jun 13 ;8:66.

2004

« Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. »
  Jaillon O, Aury JM, Brunet F, Petit JL, Stange-Thomann N, Mauceli E, Bouneau L, Fischer C, Ozouf-Costaz C, Bernot A, Nicaud S, Jaffe D, Fisher S, Lutfalla G, Dossat C, Segurens B, Dasilva C, Salanoubat M, Levy M, Boudet N, Castellano S, Anthouard V, Jubin C, Castelli V, Katinka M, Vacherie B, Biemont C, Skalli Z, Cattolico L, Poulain J, De Berardinis V, Cruaud C, Duprat S, Brottier P, Coutanceau JP, Gouzy J, Parra G, Lardier G, Chapple C, McKernan KJ, McEwan P, Bosak S, Kellis M, Volff JN, Guigo R, Zody MC, Mesirov J, Lindblad-Toh K, Birren B, Nusbaum C, Kahn D, Robinson-Rechavi M, Laudet V, Schachter V, Quetier F, Saurin W, Scarpelli C, Wincker P, Lander ES, Weissenbach J, Roest Crollius H., Nature. (2004) Oct 21 ;431 (7011):946-57.

« Finishing the euchromatic sequence of the human genome ».
  International Human Genome Sequencing Consortium For Genoscope and CNRS UMR-8030 : Roland Heilig, Ralph Eckenberg, Jean-Louis Petit, Núria Fonknechten, Corinne Da Silva, Laurence Cattolico, Michaël Levy, Valérie Barbe, Véronique de Berardinis, Abel Ureta-Vidal, Eric Pelletier, Virginie Vico, Véronique Anthouard, François Artiguenave, Catherine Robert, Corinne Cruaud, Thomas Brüls, Philippe Brottier, Béatrice Ségurens, Sylvie Samain, Hervé Crespeau, Claude Scarpelli, Gábor Gyapay, Patrick Wincker, William Saurin, Jean Weissenbach, Fumihiko Matsuda. Nature (2004) oct 21, 431, (7011) : 931-945

« Numerous novel annotations of the human genome sequence supported by a 5’-end-enriched cDNA collection »
  Porcel BM, Delfour O, Castelli V, De Berardinis V, Friedlander L, Cruaud C, Ureta-Vidal A, Scarpelli C, Wincker P, Schachter V, Saurin W, Gyapay G, Salanoubat M, Weissenbach J. Genome Res. (2004) Mar ;14(3):463-71.

2003

« The DNA sequence and analysis of human chromosome 14 ».
  Heilig R, Eckenberg R, Petit JL, Fonknechten N, Da Silva C, Cattolico L, Levy M, Barbe V, de Berardinis V, Ureta-Vidal A, Pelletier E, Vico V, Anthouard V, Rowen L, Madan A, Qin S, Sun H, Du H, Pepin K, Artiguenave F, Robert C, Cruaud C, Bruls T, Jaillon O, Friedlander L, Samson G, Brottier P, Cure S, Segurens B, Aniere F, Samain S, Crespeau H, Abbasi N, Aiach N, Boscus D, Dickhoff R, Dors M, Dubois I, Friedman C, Gouyvenoux M, James R, Madan A, Mairey-Estrada B, Mangenot S, Martins N, Menard M, Oztas S, Ratcliffe A, Shaffer T, Trask B, Vacherie B, Bellemere C, Belser C, Besnard-Gonnet M, Bartol-Mavel D, Boutard M, Briez-Silla S, Combette S, Dufosse-Laurent V, Ferron C, Lechaplais C, Louesse C, Muselet D, Magdelenat G, Pateau E, Petit E, Sirvain-Trukniewicz P, Trybou A, Vega-Czarny N, Bataille E, Bluet E, Bordelais I, Dubois M, Dumont C, Guerin T, Haffray S, Hammadi R, Muanga J, Pellouin V, Robert D, Wunderle E, Gauguet G, Roy A, Sainte-Marthe L, Verdier J, Verdier-Discala C, Hillier L, Fulton L, McPherson J, Matsuda F, Wilson R, Scarpelli C, Gyapay G, Wincker P, Saurin W, Quetier F, Waterston R, Hood L, Weissenbach J.. Nature. (2003) Feb 6 ;421(6923):601-7.

2002

« The genome sequence of the malaria mosquito Anopheles gambiae ».
  Holt RA, Subramanian GM, Halpern A, Sutton GG, Charlab R, Nusskern DR, Wincker P, Clark AG, Ribeiro JM, Wides R, Salzberg SL, Loftus B, Yandell M, Majoros WH, Rusch DB, Lai Z, Kraft CL, Abril JF, Anthouard V, Arensburger P, Atkinson PW, Baden H, de Berardinis V, Baldwin D, Benes V, Biedler J, Blass C, Bolanos R, Boscus D, Barnstead M, Cai S, Center A, Chaturverdi K, Christophides GK, Chrystal MA, Clamp M, Cravchik A, Curwen V, Dana A, Delcher A, Dew I, Evans CA, Flanigan M, Grundschober-Freimoser A, Friedli L, Gu Z, Guan P, Guigo R, Hillenmeyer ME, Hladun SL, Hogan JR, Hong YS, Hoover J, Jaillon O, Ke Z, Kodira C, Kokoza E, Koutsos A, Letunic I, Levitsky A, Liang Y, Lin JJ, Lobo NF, Lopez JR, Malek JA, McIntosh TC, Meister S, Miller J, Mobarry C, Mongin E, Murphy SD, O’Brochta DA, Pfannkoch C, Qi R, Regier MA, Remington K, Shao H, Sharakhova MV, Sitter CD, Shetty J, Smith TJ, Strong R, Sun J, Thomasova D, Ton LQ, Topalis P, Tu Z, Unger MF, Walenz B, Wang A, Wang J, Wang M, Wang X, Woodford KJ, Wortman JR, Wu M, Yao A, Zdobnov EM, Zhang H, Zhao Q, Zhao S, Zhu SC, Zhimulev I, Coluzzi M, della Torre A, Roth CW, Louis C, Kalush F, Mural RJ, Myers EW, Adams MD, Smith HO, Broder S, Gardner MJ, Fraser CM, Birney E, Bork P, Brey PT, Venter JC, Weissenbach J, Kafatos FC, Collins FH, Hoffman SL. Science. (2002) Oct 4 ;298 (5591):129-49.