Summary of *Acinetobacter baylyi, Strain ADP1, version 1.6

Authors:
Maxime Durot, Genoscope
Annett Kreimeyer, Genoscope
Francois Le Fevre, Genoscope
David Vallenet, Genoscope

Summary:
AcinetoCyc is a bioinformatics database that describes the metabolism of Acinetobacter baylyi ADP1. The long-term goal of the project is to describe the molecular catalog of the A.baylyi cell, as well as the functions of each of its molecular parts, to facilitate a system-level understanding of A. baylyi. AcinetoCyc is an electronic reference source for scientists working with A. baylyi or related microorganisms

Usefull Links: -->Mage || -->Project description || Nemo Studio platform || -->Thesaurus internal resources

Bibliography Links: [ Barbe04 ] [ Vallenet06 ] [ LeFevre07 ] [ deBerardin08 ]


RepliconTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)
Acinetobacter 1342833319703,598,621
Genes without a physical map position:5

Pathways:200
Enzymatic Reactions:988
Transport Reactions:131
Polypeptides:3372
Protein Complexes:90
Enzymes:913
Transporters:137
Compounds:767
Transcription Units:2274
tRNAs:76

Taxonomic domain: Bacteria

Unification Links: Ncbi-Taxonomy-Db:202950

This database is Copyright & copy, 2004 Genoscope on behalf of CNS. All Rights Reserved.


References

Barbe04: Barbe V, Vallenet D, Fonknechten N, Kreimeyer A, Oztas S, Labarre L, Cruveiller S, Robert C, Duprat S, Wincker P, Ornston LN, Weissenbach J, Marliere P, Cohen GN, Medigue C (2004). "Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium." Nucleic Acids Res 32(19);5766-79. PMID: 15514110

deBerardin08: de Berardinis V, Vallenet D, Castelli V, Besnard M, Pinet A, Cruaud C, Samair S, Lechaplais C, Gyapay G, Richez C, Durot M, Kreimeyer A, Le Fevre F, Schachter V, Pezo V, Doring V, Scarpelli C, Medigue C, Cohen GN, Marliere P, Salanoubat M, Weissenbach J (2008). "A complete collection of single-gene deletion mutants of Acinetobacter baylyi ADP1." Mol Syst Biol 4;174. PMID: 18319726

LeFevre07: LeFevre F, Smidtas S, Schachter V (2007). "Cyclone: java-based querying and computing with Pathway/Genome databases." Bioinformatics 23(10);1299-300. PMID: 17392333

Vallenet06: Vallenet D, Labarre L, Rouy Z, Barbe V, Bocs S, Cruveiller S, Lajus A, Pascal G, Scarpelli C, Medigue C (2006). "MaGe: a microbial genome annotation system supported by synteny results." Nucleic Acids Res 34(1);53-65. PMID: 16407324


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Please cite the following article in publications resulting from the use of this database:
Page generated by SRI International Pathway Tools version 11.5 on Tue Mar 16, 2010.
Page modified by Nemostudio
The gene dispensability/essentiality data from the A. baylyi ADP1 knockout collection (de Berardinis et al., in preparation) and the experimental growth phenotyping data are provided by Metabolic Thesaurus team
Project Description Cyclone MicroCyc