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Summary of *Acinetobacter baylyi, Strain ADP1, version 1.6
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Authors:
Maxime Durot, Genoscope
Annett Kreimeyer, Genoscope
Francois Le Fevre, Genoscope
David Vallenet, Genoscope
Summary:
AcinetoCyc is a bioinformatics database that describes the metabolism of Acinetobacter baylyi ADP1.
The long-term goal of the project is to describe the molecular catalog of the A.baylyi cell, as well
as the functions of each of its molecular parts, to facilitate a system-level understanding of A.
baylyi. AcinetoCyc is an electronic reference source for scientists working with A. baylyi or related
microorganisms
| Replicon | Total Genes | Protein Genes | RNA Genes | Pseudogenes | Size (bp) |
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| Acinetobacter 1 | 3428 | 3331 | 97 | 0 | 3,598,621 |
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| Genes without a
physical map position: | 5 |
Taxonomic domain:
Bacteria
Unification Links:
Ncbi-Taxonomy-Db:202950
This database is Copyright & copy, 2004 Genoscope on behalf of CNS. All Rights Reserved.
References
Barbe04: Barbe V, Vallenet D, Fonknechten N, Kreimeyer A, Oztas S, Labarre L, Cruveiller S, Robert C, Duprat S, Wincker P, Ornston LN, Weissenbach J, Marliere P, Cohen GN, Medigue C (2004). "Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium." Nucleic Acids Res 32(19);5766-79. PMID: 15514110
deBerardin08: de Berardinis V, Vallenet D, Castelli V, Besnard M, Pinet A, Cruaud C, Samair S, Lechaplais C, Gyapay G, Richez C, Durot M, Kreimeyer A, Le Fevre F, Schachter V, Pezo V, Doring V, Scarpelli C, Medigue C, Cohen GN, Marliere P, Salanoubat M, Weissenbach J (2008). "A complete collection of single-gene deletion mutants of Acinetobacter baylyi ADP1." Mol Syst Biol 4;174. PMID: 18319726
LeFevre07: LeFevre F, Smidtas S, Schachter V (2007). "Cyclone: java-based querying and computing with Pathway/Genome databases." Bioinformatics 23(10);1299-300. PMID: 17392333
Vallenet06: Vallenet D, Labarre L, Rouy Z, Barbe V, Bocs S, Cruveiller S, Lajus A, Pascal G, Scarpelli C, Medigue C (2006). "MaGe: a microbial genome annotation system supported by synteny results." Nucleic Acids Res 34(1);53-65. PMID: 16407324
Please cite the following article in publications resulting from the use of this database:
Page generated by SRI International Pathway Tools version 11.5 on Tue Mar 16, 2010.
Page modified by Nemostudio
The gene dispensability/essentiality data from the A. baylyi ADP1 knockout
collection (de Berardinis et al., in preparation) and the experimental growth
phenotyping data are provided by Metabolic Thesaurus team
Project Description
Cyclone
MicroCyc
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