NaS assemblies
Statistics of NaS reads assemblies produced using Celera assembler
| Acinetobacter baylyi ADP1 | Escherichia coli K-12 substr. MG1655 | Saccharomyces cerevisae W303 |
NaS Reads input coverage | 13X (minimal coverage) | 43X (optimal coverage) | 14X (minimal coverage) | 30X (optimal coverage) | 13X of >10kb reads |
# contig | 1 | 1 | 1 | 1 | 121 |
Assembly size(pb) | 3 621 348 | 3 632 197 | 4 650 875 | 4 654 321 | 12 766 451 |
Assembly GC(%) | 40.44% | 40.44% | 50.79% | 50.79% | 38.5% |
Reference GC(%) | 40.43% | 50.79% | 38.21% |
N50 size(bp) | 3 621 348 | 3 632 197 | 4 650 875 | 4 654 321 | 154 851 |
L50 | 1 | 1 | 1 | 1 | 23 |
N90 size(pb) | 3 621 348 | 3 632 197 | 4 650 875 | 4 654 321 | 48 531 |
L90 | 1 | 1 | 1 | 1 | 81 |
NA50 | 2 570 691 | 2 569 185 | 3 507 126 | 3 507 873 | 138 660 |
# misassemblies | 2 | 2 | 2 | 2 | 79 |
# misassemblies contig | 1 | 1 | 1 | 1 | 46 |
# local misassemblies | 4 | 3 | 3 | 3 | 11 |
Genome fraction(%) | 99.997% | 100% | 100.0% | 100.0% | 94.34% |
Duplication ratio | 1.007 | 1.009 | 1.002 | 1.003 | 1.103 |
# mismatches per 100 kbp | 3.11 | 1.97 | 3.21 | 0.97 | 42.36 |
# indels per 100kbp | 0.14 | 0.14 | 1.57 | 0.97 | 9.66 |
# Genes | 3416 | 3416 | 4517 | 4517 | |
Assemblies were performed using Celera assembler, and redundant contigs were eliminated from the raw output. Metrics were computed using Quast
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