Oikopleura Genome Browser

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Search using a sequence name, gene name, locus, or other landmark. The wildcard character * is allowed


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scaffold_1:122054..142053
region of scaffold_1 from 122054 to 142053
scaffold_2:85052..105051
region of scaffold_2 from 85052 to 105051
Q9BQR3
matches with Q9BQR3 human protein

Assembly v3 summary (download)


Number
N50 length (bp)
Size (bp)
Reads
-
-
-
Contigs
5,945
24,827
66,532,959
Scaffolds
1,260
395,225
70,471,451



Oikopleura dioica

Oikopleura dioica genome Oikopleura dioica


Annotation v1 summary (download)

Annotated coding regions
29,572
Annotated Trancript Segments
29,572
Average number of coding exons per coding region
3.48
Average number of UTR exons per coding region
n.a.
Average coding region size (bp)
1,006
Average CDS size (bp)
805
Average exon size (bp)
231



Conditions for use


The purpose of the release of the preliminary data for the Oikopleura dioica genome sequencing project is to enable the scientific community to use this information for studying individual genes and their biological effects. Genoscope and collaborators plan to publish the genome sequence and its annotation in a peer-reviewed journal in a timely fashion. Permission should be obtained from Genoscope before publishing analyses on the chromosome or the genome scale.