Blastocystis Genome Browser

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About the project

The Blastocystis hominis genome was sequenced using a Whole Genome Shotgun strategy, with a base coverage equal to 12.4X.

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scaffold_1
scaffold_1
scaffold_1:932793..952792
region of scaffold_1 from 932,793 to 952,792
GSBLHT00000947001
region of Genoscope annotation with identifier GSBLHT00009626001
A1CW29
matches with A1CW29 Neosartorya fischeri protein from Uniprot




Blastocystis hominis at LMGE (UMR 6023)

Blastocystis hominis Photo of <i>Blastocystis hominis</i>)
Blastocystis hominis - Image from Wikipedia

Assembly summary (download)


Number
N50 length
Size
Reads
305,557
-
-
Contigs ( &ge 2kb)
157
297kb
18.7Mb
Scaffolds
54
901kb
18.8Mb


Annotation summary (download)

Annotated gene models
6,020
Average gene size (bp)
1,299
Average coding exon size (bp)
280
Average intron size (bp)
50.5
Average peptide size (aa)
358