This directory contains the position of the Ty1, Ty2, Ty3, Ty4 and Ty5 transposons in the reference genome and in contigs. Each transposon sequence was extracted from the reference genome and mapped to the assemblies using the Last aligner. Then, we extracted 1 kb left and right from the position we detected and mapped these flanking region to the reference genome using Nucmer. The columns FlankingLeft and FlankingRight indicate whether the flanking sequence situated left or right of the element has mapped on the reference.