########################################### # 04/09/2007 - vitis AT genoscope.cns.fr # Description of chr.agp file ########################################### Field1 : chromosome name Field2 : Start position on the chromosome Filed3 : End position on the chromosome Field4 : Type of sequence (S=scaffold, N=gap) Field5 : Name of sequence - SCAFxxxx : scaffold xxxx - GAP_IS : estimated gap between scaffolds in ultracontigs - GAP_UC : gap between two mapped ultracontigs (10Kb) - GAP_UN : gap between 2 random ultracontigs, or between ultracontigs and scaffold, not mapped (1kb) Field6 : Start position on scaffold Field7 : End position on scaffold Field8 : scaffold's strand (on the chromosome) Field9 : scaffold's length