########################################### # 08/01/2004 - tetraweb AT genoscope.cns.fr # Description of chr.agp file ########################################### Field1 : chromosome name Field2 : Start position on the chromosome Filed3 : End position on the chromosome Field4 : Type of sequence (S=scaffold, N=gap) Field5 : Name of sequence - SCAFxxxx : scaffold xxxx - CENT : centromere (gap of 500Kb) - GAP_IS : gap between scaffolds in ultracontig (1kb) - GAP_UC : gap between two mapped ultracontigs (50Kb) - GAP_UN : gap between 2 random ultracontigs, or between ultracontigs and scaffold, not mapped (2kb) Field6 : Start position on scaffold Field7 : End position on scaffold Field8 : scaffold's strand (on the chromosome) Field9 : scaffold's length