MaGe - MicroScope - Web Interface System & Specialized Databases for (re)Annotation and Analysis of Microbial Genomes

Genome Browser interface provides an user-friendly way to visualize and explore a replicon content (cartographic map of the genome), together with the similarity results (synteny maps) obtained with other bacterial genomes available in our PkGDB database (i.e, (re)annotation of bacterial genomes or complete proteome downloaded from the RefSeq/WGS sections). Artemis tool can be launched at this level to examine more precisely the nucleotidic/proteic sequences (a useful interface to correct translational start codon positions if necessary). For genomic objects drawn in part of the chromosome visualized in the cartographic map, additional information is listed in a table.

Label	Type	Gene	Begin	End	Length	Frame	Product	Matrix	Evidence	AMIGene Status	Mutation	GC Content	GC3 Content	CAI	Mw (Da)	pI
EC55989_5066	CDS	thrL	203	268	66	+2	thr operon leader peptide		automatic/finished	no	no	0.5152	0.6364	0.63	2138.39	11.00
EC55989_0002	CDS	thrA	349	2811	2463	+1	fused aspartate kinase/homoserine dehydrogenase 1	1	automatic/finished	no	no	0.5319	0.5786	0.46	89047.54	5.51
EC55989_0003	CDS	thrB	2813	3745	933	+2	homoserine kinase	1	automatic/finished	no	no	0.5584	0.6109	0.44	33608.25	5.45
EC55989_0004	CDS	thrC	3746	5032	1287	+2	threonine synthase	1	automatic/finished	no	no	0.5322	0.5991	0.52	47081.98	5.24
EC55989_0005	CDS		5246	5542	297	+2	conserved exported protein of unknown function	3	automatic/finished	no	no	0.5421	0.4747	0.48	11306.34	10.16
EC55989_0006	CDS	yaaA	5695	6471	777	-2	peroxide stress resistance protein YaaA	1	automatic/finished	no	no	0.4916	0.5907	0.46	29642.78	6.41
EC55989_0007	CDS	yaaJ	6541	7971	1431	-2	putative transporter YaaJ	1	automatic/finished	no	no	0.5304	0.5828	0.43	51630.74	8.93
EC55989_0008	CDS		8087	8371	285	+2	conserved hypothetical protein	3	validated/finished	no	no	0.5053	0.4947	0.30	10763.70	10.70
EC55989_0009	CDS	talB	8250	9203	954	+3	transaldolase B	1	automatic/finished	no	no	0.5126	0.5535	0.70	35247.93	5.11
EC55989_0010	CDS	mog	9318	9905	588	+3	molybdopterin adenylyltransferase	3	automatic/finished	no	no	0.5391	0.5510	0.47	21163.53	5.02
EC55989_0011	CDS	satP	9940	10506	567	-2	acetate/succinate:H(+) symporter	2	automatic/finished	no	no	0.5309	0.6402	0.67	20070.03	8.07
EC55989_0012	CDS	yaaW	10655	11368	714	-1	putative enzyme-specific chaperone YaaW	1	automatic/finished	no	no	0.5112	0.5756	0.39	26663.73	9.25
EC55989_0013	CDS		11394	11798	405	-3	conserved exported protein of unknown function	1	automatic/finished	no	no	0.4765	0.5556	0.49	14509.00	7.86
EC55989_0014	CDS	dnaK	12175	14091	1917	+1	chaperone protein DnaK	2	automatic/finished	no	no	0.5128	0.5290	0.81	69112.10	4.83
EC55989_misc_RNA_1	misc_RNA	tpke11	14092	14180	89	+1	tpke11		validated/finished	no	no
EC55989_0015	CDS	dnaJ	14180	15310	1131	+2	chaperone protein DnaJ	2	automatic/finished	no	no	0.5491	0.5570	0.64	41042.62	8.02
EC55989_misc_RNA_2	misc_RNA	sokC	15615	15669	55	+1	SokC		validated/finished	no	no
EC55989_0016	CDS	nhaA	16152	17318	1167	+3	Na(+):H(+) antiporter NhaA	1	automatic/finished	no	no	0.5141	0.5527	0.43	41321.86	9.28
EC55989_0017	CDS	nhaR	17378	18283	906	+2	DNA-binding transcriptional activator NhaR	3	automatic/finished	no	no	0.4757	0.4934	0.43	34255.10	5.65
EC55989_0018	CDS		18322	19281	960	-2	conserved hypothetical protein; putative exported protein	3	validated/finished	no	no	0.3656	0.3281	0.30	35925.00	4.98
EC55989_0019	CDS		19294	20463	1170	-2	conserved hypothetical protein	3	validated/finished	no	no	0.3983	0.3436	0.34	43990.54	5.33

Sequence

Label

Type

Gene

Begin

End

Length

Frame

Product

Matrix

Evidence

AMIGene Status

Mutation

GC Content

GC3 Content

CAI

Mw (Da)

History

EC55989_5066

CDS

thrL

203

268

thr operon leader peptide

automatic/finished

0.5152

0.6364

0.63

2138.39

11.00

EC55989_0002

CDS

thrA

349

2811

2463

fused aspartate kinase/homoserine dehydrogenase 1

automatic/finished

0.5319

0.5786

0.46

89047.54

5.51

EC55989_0003

CDS

thrB

2813

3745

933

homoserine kinase

automatic/finished

0.5584

0.6109

0.44

33608.25

5.45

EC55989_0004

CDS

thrC

3746

5032

1287

threonine synthase

automatic/finished

0.5322

0.5991

0.52

47081.98

5.24

EC55989_0005

CDS

5246

5542

297

conserved exported protein of unknown function

automatic/finished

0.5421

0.4747

0.48

11306.34

10.16

EC55989_0006

CDS

yaaA

5695

6471

777

-2

peroxide stress resistance protein YaaA

automatic/finished

0.4916

0.5907

0.46

29642.78

6.41

EC55989_0007

CDS

yaaJ

6541

7971

1431

-2

putative transporter YaaJ

automatic/finished

0.5304

0.5828

0.43

51630.74

8.93

EC55989_0008

CDS

8087

8371

285

conserved hypothetical protein

validated/finished

0.5053

0.4947

0.30

10763.70

10.70

EC55989_0009

CDS

talB

8250

9203

954

transaldolase B

automatic/finished

0.5126

0.5535

0.70

35247.93

5.11

EC55989_0010

CDS

mog

9318

9905

588

molybdopterin adenylyltransferase

automatic/finished

0.5391

0.5510

0.47

21163.53

5.02

EC55989_0011

CDS

satP

9940

10506

567

-2

acetate/succinate:H(+) symporter

automatic/finished

0.5309

0.6402

0.67

20070.03

8.07

EC55989_0012

CDS

yaaW

10655

11368

714

-1

putative enzyme-specific chaperone YaaW

automatic/finished

0.5112

0.5756

0.39

26663.73

9.25

EC55989_0013

CDS

11394

11798

405

-3

conserved exported protein of unknown function

automatic/finished

0.4765

0.5556

0.49

14509.00

7.86

EC55989_0014

CDS

dnaK

12175

14091

1917

chaperone protein DnaK

automatic/finished

0.5128

0.5290

0.81

69112.10

4.83

EC55989_misc_RNA_1

misc_RNA

tpke11

14092

14180

tpke11

validated/finished

EC55989_0015

CDS

dnaJ

14180

15310

1131

chaperone protein DnaJ

automatic/finished

0.5491

0.5570

0.64

41042.62

8.02

EC55989_misc_RNA_2

misc_RNA

sokC

15615

15669

SokC

validated/finished

EC55989_0016

CDS

nhaA

16152

17318

1167

Na(+):H(+) antiporter NhaA

automatic/finished

0.5141

0.5527

0.43

41321.86

9.28

EC55989_0017

CDS

nhaR

17378

18283

906

DNA-binding transcriptional activator NhaR

automatic/finished

0.4757

0.4934

0.43

34255.10

5.65

EC55989_0018

CDS

18322

19281

960

-2

conserved hypothetical protein; putative exported protein

validated/finished

0.3656

0.3281

0.30

35925.00

4.98

EC55989_0019

CDS

19294

20463

1170

-2

conserved hypothetical protein

validated/finished

0.3983

0.3436

0.34

43990.54

5.33

Sequence	Id	Begin	End	Comments
	RPTR1430387	5563	5690	27 repeats

Sequence

Begin

End

Comments

RPTR1430387

5563

5690

27 repeats

Escherichia coli 55989 - chromosome EC55.2 Public

(sequence length : 5154862 bases)