MaGe - MicroScope - Web Interface System & Specialized Databases for (re)Annotation and Analysis of Microbial Genomes

Genome Browser interface provides an user-friendly way to visualize and explore a replicon content (cartographic map of the genome), together with the similarity results (synteny maps) obtained with other bacterial genomes available in our PkGDB database (i.e, (re)annotation of bacterial genomes or complete proteome downloaded from the RefSeq/WGS sections). Artemis tool can be launched at this level to examine more precisely the nucleotidic/proteic sequences (a useful interface to correct translational start codon positions if necessary). For genomic objects drawn in part of the chromosome visualized in the cartographic map, additional information is listed in a table.

Label	Type	Gene	Begin	End	Length	Frame	Product	Matrix	Evidence	AMIGene Status	Mutation	GC Content	GC3 Content	CAI	Mw (Da)	pI
BN1095v2_10001	CDS	dnaA	1	1320	1320	+1	Chromosomal replication initiator protein	1	automatic/finished	no	no	0.3000	0.1727	0.62	50252.62	6.70
BN1095v2_10002	CDS	dnaN	1562	2668	1107	+2	DNA polymerase III subunit beta	1	automatic/finished	no	no	0.2593	0.1111	0.67	41578.25	4.88
BN1095v2_10003	CDS		2805	3011	207	+3	Putative RNA-binding mediating protein	3	automatic/finished	no	no	0.2657	0.1014	0.76	7601.56	5.34
BN1095v2_10004	CDS	recF	3028	4143	1116	+1	DNA replication and repair protein RecF	1	automatic/finished	no	no	0.2563	0.1452	0.63	42882.45	9.16
BN1095v2_10005	CDS	gyrB	4144	6045	1902	+1	DNA gyrase subunit B	1	automatic/finished	no	no	0.3260	0.1530	0.70	71113.03	5.75
BN1095v2_10006	CDS	gyrA	6065	8491	2427	+2	DNA gyrase subunit A	1	automatic/finished	no	no	0.3103	0.1446	0.68	91091.30	6.47
BN1095v2_10007	CDS		8560	8856	297	+1	Conserved hypothetical protein	3	automatic/finished	no	no	0.2626	0.1313	0.74	11214.24	4.82
BN1095v2_10008	CDS		8856	9116	261	+3	Conserved hypothetical protein	1	automatic/finished	no	no	0.2759	0.1724	0.62	9588.83	9.48
BN1095v2_10009	CDS	rsbV	9128	9445	318	+2	Anti-anti-sigma factor	3	automatic/finished	no	no	0.2516	0.1509	0.73	11894.33	6.13
BN1095v2_10010	CDS	rsbW	9449	9856	408	+2	Serine-protein kinase RsbW	3	automatic/finished	no	no	0.2770	0.1324	0.70	14835.25	4.41
BN1095v2_10011	CDS	sigB	9856	10629	774	+1	RNA polymerase sigma-B factor (Sigma-37)	3	automatic/finished	no	no	0.2778	0.1822	0.65	30031.17	5.85
BN1095v2_20001	CDS		10892	11773	882	-2	Putative diaminopimelate epimerase, PhzF family	1	automatic/finished	no	no	0.3005	0.1531	0.70	32667.78	5.00
BN1095v2_20002	CDS		11760	12512	753	-1	Transcriptional regulator, TrmB family	2	automatic/finished	no	no	0.2311	0.1554	0.64	28554.88	7.83
BN1095v2_20003	CDS	trxA	12779	13096	318	+2	Thioredoxin	3	automatic/finished	no	no	0.2893	0.2170	0.71	12006.54	4.81
BN1095v2_20004	CDS		13303	14577	1275	-3	Putative pyridoxal phosphate-dependent transferase	2	automatic/finished	no	no	0.2988	0.1718	0.64	47779.32	8.36
BN1095v2_20005	CDS		15463	16299	837	+1	Transcription antiterminator, PTS operon regulator	1	automatic/finished	no	no	0.2700	0.1935	0.57	32236.66	5.20
BN1095v2_20006	CDS		16651	18228	1578	+1	PTS system, glucose-like IIBC component	3	automatic/finished	no	no	0.3251	0.1863	0.68	57375.45	8.74
BN1095v2_20007	CDS	malY	18221	19405	1185	+2	Bifunctional protein: cystathionine beta-lyase / repressor	1	automatic/finished	no	no	0.2954	0.2380	0.56	46176.30	5.48
BN1095v2_20008	CDS		19423	20022	600	+1	Putative phosphosugar isomerase	3	automatic/finished	no	no	0.3217	0.1550	0.69	21150.28	5.72

Sequence

Label

Type

Gene

Begin

End

Length

Frame

Product

Matrix

Evidence

AMIGene Status

Mutation

GC Content

GC3 Content

CAI

Mw (Da)

History

BN1095v2_10001

CDS

dnaA

1320

Chromosomal replication initiator protein

automatic/finished

0.3000

0.1727

0.62

50252.62

6.70

BN1095v2_10002

CDS

dnaN

1562

2668

1107

DNA polymerase III subunit beta

automatic/finished

0.2593

0.1111

0.67

41578.25

4.88

BN1095v2_10003

CDS

2805

3011

207

Putative RNA-binding mediating protein

automatic/finished

0.2657

0.1014

0.76

7601.56

5.34

BN1095v2_10004

CDS

recF

3028

4143

1116

DNA replication and repair protein RecF

automatic/finished

0.2563

0.1452

0.63

42882.45

9.16

BN1095v2_10005

CDS

gyrB

4144

6045

1902

DNA gyrase subunit B

automatic/finished

0.3260

0.1530

0.70

71113.03

5.75

BN1095v2_10006

CDS

gyrA

6065

8491

2427

DNA gyrase subunit A

automatic/finished

0.3103

0.1446

0.68

91091.30

6.47

BN1095v2_10007

CDS

8560

8856

297

Conserved hypothetical protein

automatic/finished

0.2626

0.1313

0.74

11214.24

4.82

BN1095v2_10008

CDS

8856

9116

261

Conserved hypothetical protein

automatic/finished

0.2759

0.1724

0.62

9588.83

9.48

BN1095v2_10009

CDS

rsbV

9128

9445

318

Anti-anti-sigma factor

automatic/finished

0.2516

0.1509

0.73

11894.33

6.13

BN1095v2_10010

CDS

rsbW

9449

9856

408

Serine-protein kinase RsbW

automatic/finished

0.2770

0.1324

0.70

14835.25

4.41

BN1095v2_10011

CDS

sigB

9856

10629

774

RNA polymerase sigma-B factor (Sigma-37)

automatic/finished

0.2778

0.1822

0.65

30031.17

5.85

BN1095v2_20001

CDS

10892

11773

882

-2

Putative diaminopimelate epimerase, PhzF family

automatic/finished

0.3005

0.1531

0.70

32667.78

5.00

BN1095v2_20002

CDS

11760

12512

753

-1

Transcriptional regulator, TrmB family

automatic/finished

0.2311

0.1554

0.64

28554.88

7.83

BN1095v2_20003

CDS

trxA

12779

13096

318

Thioredoxin

automatic/finished

0.2893

0.2170

0.71

12006.54

4.81

BN1095v2_20004

CDS

13303

14577

1275

-3

Putative pyridoxal phosphate-dependent transferase

automatic/finished

0.2988

0.1718

0.64

47779.32

8.36

BN1095v2_20005

CDS

15463

16299

837

Transcription antiterminator, PTS operon regulator

automatic/finished

0.2700

0.1935

0.57

32236.66

5.20

BN1095v2_20006

CDS

16651

18228

1578

PTS system, glucose-like IIBC component

automatic/finished

0.3251

0.1863

0.68

57375.45

8.74

BN1095v2_20007

CDS

malY

18221

19405

1185

Bifunctional protein: cystathionine beta-lyase / repressor

automatic/finished

0.2954

0.2380

0.56

46176.30

5.48

BN1095v2_20008

CDS

19423

20022

600

Putative phosphosugar isomerase

automatic/finished

0.3217

0.1550

0.69

21150.28

5.72

Sequence	Id	Begin	End	Comments
	RPTR1296321	10606	10700	1 repeats
	RPTR1296322	16273	16608	2 repeats

Sequence

Begin

End

Comments

RPTR1296321

10606

10700

1 repeats

RPTR1296322

16273

16608

2 repeats

Clostridium difficile MID11 7032989 - chromosome BN1095.2 Public

(sequence length : 4492700 bases)