CDSs classified by EGGNOG in COG category J
Acinetobacter baylyi ADP1 - chromosome ACIAD.1
J: INFORMATION STORAGE AND PROCESSING -> Translation, ribosomal structure and biogenesis
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OG ID | OG function | Label | Gene | Product | COG | PFAM short name | KO |
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3NK51 | Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) | ACIAD0013 | tyrS | tyrosyl-tRNA synthetase | COG0162 | tRNA-synt_1b | K01866 |
3NIHR | amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) | ACIAD0022 | ileS | isoleucyl-tRNA synthetase | COG0060 | Anticodon_1, tRNA-synt_1, zf-FPG_IleRS | K01870 |
3NNMM | May reduce aminoacrylate peracid to aminoacrylate. Required to remove a toxic intermediate produce by the pyrimidine nitrogen degradation | ACIAD0029 | rutC | putative 3-aminoacrylate deaminase RutC (Pyrimidine utilization protein C) | COG0251 | Ribonuc_L-PSP | K09021 |
3NJQV | Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates | ACIAD0050 | rph | ribonuclease PH (RNase PH), tRNA nucleotidyltransferase | COG0689 | RNase_PH, RNase_PH_C | K00989 |
3NNHV | Endoribonuclease L-PSP | ACIAD0117 | conserved hypothetical protein; putative endoribonuclease L-PSP | Ribonuc_L-PSP | |||
3NK37 | Arginyl-tRNA synthetase | ACIAD0164 | argS | arginyl-tRNA synthetase | COG0018 | Arg_tRNA_synt_N, DALR_1, tRNA-synt_1d | K01887 |
3NSRJ | MafB19-like deaminase | ACIAD0204 | putative cytidine and deoxycytidylate deaminase zinc-binding like protein | dCMP_cyt_deam_1 | |||
3NKGI | Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Catalyzes the conversion of L-threonine, HCO(3)(-) CO(2) and ATP to give threonylcarbamoyl-AMP (TC-AMP) as the acyladenylate intermediate, with the release of diphosphate | ACIAD0208 | putative ribosome maturation factor (dsRNA-binding protein) (RimN) | COG0009 | Sua5_yciO_yrdC | K07566 | |
3NKDT | Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions | ACIAD0211 | def | peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase, binds Zn(II)) | COG0242 | Pep_deformylase | K01462 |
3NNI5 | Endoribonuclease L-PSP | ACIAD0222 | putative RidA family protein | Ribonuc_L-PSP | |||
3NK6Q | Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5- dihydroxy-2-cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon | ACIAD0272 | putative glutamyl t-RNA synthetase | tRNA-synt_1c | K01894 | ||
3NIQ7 | This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis | ACIAD0299 | tufB | protein chain elongation factor EF-Tu, possible GTP-binding factor (duplicate of tufA) | GTP_EFTU, GTP_EFTU_D2, GTP_EFTU_D3 | ||
3NJ44 | Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors | ACIAD0302 | rplK | 50S ribosomal protein L11 | Ribosomal_L11, Ribosomal_L11_N | ||
3NIPW | Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release | ACIAD0304 | rplA | 50S ribosomal protein L1 | COG0081 | Ribosomal_L1 | K02863 |
3NIS4 | Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors | ACIAD0305 | rplJ | 50S ribosomal protein L10 | COG0244 | Ribosomal_L10 | K02864 |
3NNIS | Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation | ACIAD0306 | rplL | 50S ribosomal protein L7/L12 | COG0222 | Ribosomal_L12, Ribosomal_L12_N | K02935 |
3NKH2 | Specifically methylates the ribose of guanosine 2251 in 23S rRNA | ACIAD0357 | putative tRNA/rRNA methyltransferase | COG0566 | SpoU_methylase, SpoU_sub_bind | K03218 | |
3NKI1 | One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex | ACIAD0369 | infB | protein chain initiation factor IF-2 | COG0532 | GTP_EFTU, IF-2, IF2_N, IF2_assoc | K02519 |
3NN3B | One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA | ACIAD0370 | rbfA | ribosome-binding factor A | COG0858 | RBFA | K02834 |
3NNXP | Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome | ACIAD0401 | rpsO | 30S ribosomal protein S15 | COG0184 | Ribosomal_S15 | K02956 |
3NIGW | Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction | ACIAD0402 | pnp | polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) | COG1185 | KH_1, PNPase, RNase_PH, RNase_PH_C, S1 | K00962 |
3NPDX | Ribosomal protein L31 | ACIAD0425 | rpmE2 | 50S ribosomal protein L31 type B | COG0254 | Ribosomal_L31 | K02909 |
3NJRE | Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs | ACIAD0438 | rne | ribonuclease E (RNase E): endoribonuclease for rRNA processing and mRNA degradation | COG1530 | RNase_E_G, S1 | K08300 |
3NJU3 | Responsible for synthesis of pseudouridine from uracil | ACIAD0442 | rluC | 23S rRNA pseudouridylate synthase | COG0564 | PseudoU_synth_2, S4 | K06179 |
3NPBC | One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex | ACIAD0472 | infA | protein chain initiation factor IF-1 | COG0361 | eIF-1a | K02518 |
3NJS9 | Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs | ACIAD0474 | truA | tRNA-pseudouridine synthase I | COG0101 | PseudoU_synth_1 | K06173 |
3NJPT | Asparaginase | ACIAD0476 | putative L-asparaginase I (AnsA) | COG0252 | Asparaginase | K01424 | |
3NPRW | Belongs to the bacterial ribosomal protein bL33 family | ACIAD0501 | rpmG | 50S ribosomal protein L33 | Ribosomal_L33 | ||
3NNZ1 | Belongs to the bacterial ribosomal protein bL28 family | ACIAD0502 | rpmB | 50S ribosomal protein L28 | Ribosomal_L28 | ||
3NJI9 | Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs | ACIAD0557 | rlmN | 23S rRNA adenosine methyltransferase | COG0820 | Radical_SAM | K06941 |
3NKTF | histidyl-tRNA synthetase | ACIAD0562 | hisS | histidyl-tRNA synthetase | COG0124 | HGTP_anticodon, tRNA-synt_His | K01892 |
3NKA4 | Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) | ACIAD0591 | queA | S-adenosylmethionine:tRNA ribosyltransferase-isomerase (Queuosine biosynthesis protein ) | COG0809 | Queuosine_synth | K07568 |
3NMGU | Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus | ACIAD0603 | conserved hypothetical protein | ||||
3NJ1X | Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) | ACIAD0609 | aspS | aspartyl-tRNA synthetase | COG0173 | GAD, tRNA-synt_2, tRNA_anti-codon | K01876 |
3NNGT | Sigma 54 modulation protein / S30EA ribosomal protein | ACIAD0658 | putative sigma(54) modulation protein RpoX | COG1544 | Ribosomal_S30AE | K05808 | |
3NJ9H | Specifically methylates the guanosine in position 1516 of 16S rRNA | ACIAD0679 | conserved hypothetical protein; putative methyltransferase | COG0500 | SAM_MT | K15984 | |
3NIIK | Specifically methylates the guanine in position 1207 of 16S rRNA in the 30S particle | ACIAD0701 | rsmC | ribosomal RNA small subunit methyltransferase C (rRNA (guanine-N(2)-)-methyltransferase) (16S rRNA m2G1207 methyltransferase) | COG2813 | MTS, MTS_N | K00564 |
3NIT3 | Responsible for synthesis of pseudouridine from uracil | ACIAD0715 | putative dual specificity pseudouridine synthase for 23S rRNA and tRNAphe modification (RluA-like) | COG0564 | PseudoU_synth_2 | K06177 | |
3NIRS | Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation | ACIAD0768 | metG | methionyl-tRNA synthetase | COG0143 | tRNA-synt_1g, tRNA_bind | K01874 |
3NJJ4 | Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS | ACIAD0782 | proS | prolyl-tRNA synthetase | COG0442 | HGTP_anticodon, tRNA-synt_2b, tRNA_edit | K01881 |
3NIRM | Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) | ACIAD0822 | gatB | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B | COG0064 | GatB_N, GatB_Yqey | K02434 |
3NIMZ | Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) | ACIAD0823 | gatA | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A | COG0154 | Amidase | K02433 |
3NJ6P | Ribonuclease E/G family | ACIAD0830 | cafA | ribonuclease G, endoribonuclease G (cytoplasmic axial filament protein ) | COG1530 | RNase_E_G, S1 | K08301 |
3NJKN | Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U16 in tRNAs | ACIAD0837 | dusC | tRNA-dihydrouridine synthase C | COG0042 | Dus | K05541 |
3NIUW | Belongs to the pseudouridine synthase RsuA family | ACIAD0861 | putative ribosomal large subunit pseudouridine synthase B (Pseudouridylate synthase) (Uracil hydrolyase) | COG1187 | PseudoU_synth_2, S4 | K06178 | |
3NM1N | Acetyltransferases including N-acetylases of ribosomal proteins | ACIAD0864 | putative acetyltransferase | Acetyltransf_3 | |||
3NJAG | Belongs to the SUA5 family | ACIAD0865 | putative translation factor | Sua5_yciO_yrdC | |||
3NPDH | Belongs to the bacterial ribosomal protein bL32 family | ACIAD0869 | rpmF | 50S ribosomal protein L32 | Ribosomal_L32p | ||
3NN2Z | Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit | ACIAD0881 | rpsL | 30S ribosomal protein S12 | Ribosom_S12_S23 | ||
3NM4A | One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA | ACIAD0883 | rpsG | 30S ribosomal protein S7 | Ribosomal_S7 | ||
3NIEG | Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome | ACIAD0884 | fusA | protein chain elongation factor EF-G, GTP-binding | COG0480 | EFG_C, EFG_II, EFG_IV, GTP_EFTU, GTP_EFTU_D2 | K02355 |
3NIQ7 | This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis | ACIAD0885 | tufA | protein chain elongation factor EF-Tu (duplicate of tufB) | COG0050 | GTP_EFTU, GTP_EFTU_D2, GTP_EFTU_D3 | K02358 |
3NSQ3 | Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions | ACIAD1039 | def2 | peptide deformylase 2 | COG0242 | Pep_deformylase | K01462 |
3NJ38 | Belongs to the class-II aminoacyl-tRNA synthetase family | ACIAD1069 | lysS | lysyl-tRNA synthetase | COG1190 | tRNA-synt_2, tRNA_anti-codon | K04567 |
3NK7T | Specifically methylates the guanine in position 966 of 16S rRNA in the assembled 30S particle | ACIAD1100 | putative methyltransferase | COG0742 | Cons_hypoth95 | K08316 | |
3NJF6 | Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA | ACIAD1113 | rlmH | Ribosomal RNA large subunit methyltransferase H | COG1576 | SPOUT_MTase | K00783 |
3NJ80 | Pseudouridine synthase | ACIAD1203 | rluA | dual specificity pseudouridine synthase for 23S rRNA and tRNAphe modification | COG0564 | PseudoU_synth_2 | K06177 |
3NJVQ | Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 | ACIAD1221 | trmU | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase | COG0482 | tRNA_Me_trans | K00566 |
3NIN9 | Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain | ACIAD1253 | alaS | alanyl-tRNA synthetase | COG0013 | DHHA1, tRNA-synt_2c, tRNA_SAD | K01872 |
3NKZ8 | Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA | ACIAD1268 | putative N-6 Adenine-specific DNA methylase | COG1092, COG0116 | Methyltrans_SAM, THUMP, UPF0020 | K12297 | |
1RS1C | GNAT family acetyltransferase | ACIAD1279 | cphA | Cyanophycin synthetase | COG1181 | Mur_ligase_C, Mur_ligase_M, RimK | K03802 |
3NJ1J | Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA | ACIAD1302 | trmB | tRNA(guanine-7)methyltransferase | COG0220 | Methyltransf_4 | K03439 |
3NIY4 | DEAD-box RNA helicase involved in RNA degradation. Has RNA-dependent ATPase activity and unwinds double-stranded RNA | ACIAD1314 | rhlB | ATP-dependent RNA helicase (DEAD box) | COG0513 | DEAD, Helicase_C | K03732 |
3NPA3 | Belongs to the bacterial ribosomal protein bS21 family | ACIAD1331 | rpsU | 30S ribosomal protein S21 | Ribosomal_S21 | ||
3NIP5 | Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 | ACIAD1371 | rimO | Ribosomal protein S12 methylthiotransferases | COG0621 | Radical_SAM, UPF0004 | K14441 |
3NK5V | Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another | ACIAD1373 | frr | ribosome releasing factor | COG0233 | RRF | K02838 |
3NN87 | Belongs to the HSP15 family | ACIAD1386 | hslR | heat shock protein 15 | COG1188 | S4 | K04762 |
3NNXB | Binds directly to 16S ribosomal RNA | ACIAD1389 | rpsT | 30S ribosomal protein S20 | COG0268 | Ribosomal_S20p | K02968 |
3NKQW | Belongs to the class-I aminoacyl-tRNA synthetase family | ACIAD1481 | cysS | cysteinyl-tRNA synthetase | COG0215 | DALR_2, tRNA-synt_1e | K01883 |
3NKR8 | Nodulation protein S (NodS) | ACIAD1557 | putative methyltransferase | NodS | |||
3NQQ9 | Amidase | ACIAD1618 | amdA | amidase | COG0154 | Amidase | K01426 |
3NJW0 | Dual-specificity methyltransferase that catalyzes the formation of 5-methyluridine at position 54 (m5U54) in all tRNAs, and that of position 341 (m5U341) in tmRNA (transfer-mRNA) | ACIAD1645 | trmA | tRNA (uracil-5-)-methyltransferase | COG2265 | tRNA_U5-meth_tr | K00557 |
3NK4U | tRNA synthetases class I (E and Q), anti-codon binding domain | ACIAD1920 | glnS | glutaminyl-tRNA synthetase | COG0008 | tRNA-synt_1c, tRNA-synt_1c_C | K01886 |
3NM3S | PELOTA RNA binding domain | ACIAD1960 | stiP | Cysteine protease StiP | PELOTA_1, PRTase_1 | ||
3NMYH | ATP-grasp in the biosynthetic pathway with Ter operon | ACIAD1963 | conserved hypothetical protein | ATPgrasp_Ter | |||
3NIW2 | Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue | ACIAD2029 | putative adenine-specific methylase | COG2890 | MTS | K07320 | |
3NJ4G | ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner | ACIAD2071 | putative GTP-binding protein | COG0012 | MMR_HSR1, YchF-GTPase_C | K06942 | |
3NKAE | Asparaginase | ACIAD2088 | aspQ | glutaminase-asparaginase | COG0252 | Asparaginase | K05597 |
3NJAD | Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA | ACIAD2090 | TrmJ | tRNA (cytidine/uridine-2'-O-)-methyltransferase | COG0565 | SpoU_methylase | K15396 |
3NSP0 | Siderophore biosynthesis protein domain | ACIAD2117 | putative siderophore biosynthese protein (bfnL) | Acetyltransf_8 | |||
3NJZR | Involved in peptide bond synthesis. Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by augmenting the peptidyl transferase activity of the ribosome. Modification of Lys-34 is required for alleviation | ACIAD2206 | efp | elongation factor P | COG0231 | EFP, EFP_N, Elong-fact-P_C | K02356 |
3NPGX | Binds the 23S rRNA | ACIAD2210 | rpmE | 50S ribosomal protein L31 | COG0254 | Ribosomal_L31 | K02909 |
3NJR4 | Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome | ACIAD2268 | tsf | protein chain elongation factor EF-Ts | COG0264 | EF_TS | K02357 |
3NIVD | Belongs to the universal ribosomal protein uS2 family | ACIAD2269 | rpsB | 30S ribosomal protein S2 | COG0052 | Ribosomal_S2 | K02967 |
3NIW8 | Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit | ACIAD2284 | putative ribosomal RNA small subunit methyltransferase E (rsmE) | COG1385 | Methyltrans_RNA | K09761 | |
3NK6J | Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate | ACIAD2288 | cca | Multifunctional protein [Includes: CCA-adding enzyme ; 2'-nucleotidase ; 2',3'-cyclic phosphodiesterase ; Phosphatase] | COG0617 | PolyA_pol, PolyA_pol_RNAbd | K00974 |
3NJ9N | HRDC domain | ACIAD2310 | rnd | ribonuclease D, processes tRNA | COG0349 | DNA_pol_A_exo1, HRDC | K03684 |
3NM5D | thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence | ACIAD2347 | rpsA | 30S ribosomal protein S1 | COG0539 | S1 | K02945 |
3NN6N | Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) | ACIAD2350 | putative deaminase | MafB19-deam | |||
3NJAY | Specifically methylates the N7 position of guanine in position 527 of 16S rRNA | ACIAD2368 | gidB | glucose-inhibited division protein B (methyltransferase) | COG0357 | GidB | K03501 |
3NJ0U | COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits (eIF-2Bgamma eIF-2Bepsilon) | ACIAD2369 | putative nucleotidyl transferase | COG1208 | NTP_transferase | K00992 | |
3NK0S | RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs | ACIAD2373 | hfq | host factor I for bacteriophage Q beta replication, a growth-related protein | COG1923 | Hfq | K03666 |
3NK7C | RNA pseudouridylate synthase | ACIAD2377 | putative pseudouridylate synthase | COG0564 | PseudoU_synth_2 | K06177 | |
3NJ1F | Belongs to the pseudouridine synthase RsuA family | ACIAD2380 | rsuA | 16S rRNA pseudouridylate 516 synthase | COG1187 | PseudoU_synth_2, S4 | K06183 |
3NKB7 | Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif | ACIAD2417 | hemK | methyl transferase | COG2890 | Methyltransf_31 | K02493 |
3NJCS | Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA | ACIAD2418 | prfA | peptide chain release factor 1 | COG0216 | PCRF, RF-1 | K02835 |
3NN4A | Binds together with S18 to 16S ribosomal RNA | ACIAD2430 | rpsF | 30S ribosomal protein S6 | COG0360 | Ribosomal_S6 | K02990 |
3NPB6 | Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit | ACIAD2431 | rpsR | 30S ribosomal protein S18 | COG0238 | Ribosomal_S18 | K02963 |
3NKTG | Binds to the 23S rRNA | ACIAD2432 | rplI | 50S ribosomal protein L9 | COG0359 | Ribosomal_L9_C, Ribosomal_L9_N | K02939 |
3NIXE | Methylates ribosomal protein L11 | ACIAD2443 | prmA | methylation of 50S ribosomal subunit protein L11 (ribosomal protein L11 methyltransferase) | COG2264 | PrmA | K02687 |
3NIZ0 | Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines | ACIAD2557 | dusB | tRNA-dihydrouridine synthase B | COG0042 | Dus | K05540 |
3NJAF | tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) | ACIAD2576 | conserved hypothetical protein; putative tRNA hydroxylase | COG4445 | MiaE | K06169 | |
3NJNF | Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism | ACIAD2581 | rnc | ribonuclease III, ds RNA | COG0571 | Ribonucleas_3_3, dsrm | K03685 |
3NSMG | SpoU rRNA Methylase family | ACIAD2626 | putative tRNA/rRNA methyltransferase | COG0566 | SpoU_methylase | K03437 | |
3NJ3Z | tRNA synthetases class II (D, K and N) | ACIAD2666 | putative lysyl-tRNA synthetase (Lysine--tRNA ligase)(PoxA) | COG2269 | tRNA-synt_2 | K04568 | |
3NJJX | Siderophore biosynthesis protein domain | ACIAD2767 | fbsK | putative siderophore biosynthesis protein; putative acetyltransferase | Acetyltransf_8 | ||
3NJ2H | Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit | ACIAD2854 | ftsJ | cell division protein (filamentous temperature sensitivity, 23S rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent) | COG0293 | FtsJ | K02427 |
3NT6Q | CRS1_YhbY | ACIAD2855 | putative RNA-binding protein | COG1534 | CRS1_YhbY | K07574 | |
3NIKH | Belongs to the class-I aminoacyl-tRNA synthetase family | ACIAD2871 | trpS | tryptophanyl-tRNA synthetase | COG0180 | tRNA-synt_1b | K01867 |
3NJP8 | Responsible for synthesis of pseudouridine from uracil | ACIAD2897 | rluD | ribosomal large subunit pseudouridine synthase D (Pseudouridylate synthase) (Uracil hydrolyase) | COG0564 | PseudoU_synth_2, S4 | K06180 |
3NNWM | This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance | ACIAD2908 | rplY | 50S ribosomal protein L25 | COG1825 | Ribosomal_L25p | K02897 |
3NIT4 | The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis | ACIAD2909 | pth | peptidyl-tRNA hydrolase | COG0193 | Pept_tRNA_hydro | K01056 |
3NJB1 | Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide | ACIAD2933 | putative tRNA/rRNA methyltransferase | COG0219 | SpoU_methylase | K03216 | |
3NJIM | Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) | ACIAD2935 | serS | seryl-tRNA synthetase ; also charges selenocystein tRNA with serine | COG0172 | Seryl_tRNA_N, tRNA-synt_2b | K01875 |
3NNY1 | Belongs to the bacterial ribosomal protein bL27 family | ACIAD2938 | rpmA | 50S ribosomal protein L27 | COG0211 | Ribosomal_L27 | K02899 |
3NNGD | This protein binds to 23S rRNA in the presence of protein L20 | ACIAD2939 | rplU | 50S ribosomal protein L21 | COG0261 | Ribosomal_L21p | K02888 |
3NISD | amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner | ACIAD2950 | valS | valyl-tRNA synthetase | COG0525 | Anticodon_1, Val_tRNA-synt_C, tRNA-synt_1 | K01873 |
3NJCM | Methyltransferase domain | ACIAD2995 | putative methyltransferase | Methyltransf_32 | |||
3NPVS | ribosome binding | ACIAD2999 | conserved hypothetical protein | ||||
3NK8E | Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits | ACIAD3009 | ksgA | S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase, kasugamycin resistance | COG0030 | RrnaAD | K02528 |
3NJCQ | This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly | ACIAD3012 | rplM | 50S ribosomal protein L13 | Ribosomal_L13 | ||
3NN52 | Belongs to the universal ribosomal protein uS9 family | ACIAD3013 | rpsI | 30S ribosomal protein S9 | COG0103 | Ribosomal_S9 | K02996 |
3NK31 | Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily | ACIAD3041 | pheT | phenylalanyl-tRNA synthetase, beta subunit | COG0072 | B3_4, B5, FDX-ACB, tRNA_bind | K01890 |
3NJCI | Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily | ACIAD3042 | pheS | phenylalanyl-tRNA synthetase, alpha-subunit | COG0016 | Phe_tRNA-synt_N, tRNA-synt_2d | K01889 |
3NNG8 | Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit | ACIAD3046 | rplT | 50S ribosomal protein L20, also posttranslational autoregulator | COG0292 | Ribosomal_L20 | K02887 |
3NPCF | Belongs to the bacterial ribosomal protein bL35 family | ACIAD3047 | rpmI | 50S ribosomal protein L35 | Ribosomal_L35p | ||
3NISA | IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins | ACIAD3054 | infC | protein chain initiation factor IF-3 | COG0290 | IF3_C, IF3_N | K02520 |
3NIJ5 | Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) | ACIAD3055 | thrS | threonyl-tRNA synthetase | COG0441 | HGTP_anticodon, TGS, tRNA-synt_2b, tRNA_SAD | K01868 |
3NJ8X | Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control | ACIAD3063 | pcnB | poly(A) polymerase I (PAP) | COG0617 | PolyA_pol, PolyA_pol_RNAbd, PolyA_pol_arg_C | K00970 |
3NJ5F | Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA | ACIAD3069 | rumA | 23S rRNA (Uracil-5-)-methyltransferase(23S rRNA(M- 5-U1939)-methyltransferase) | COG2265 | TRAM, tRNA_U5-meth_tr | K03215 |
3NN48 | Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation | ACIAD3076 | conserved hypothetical protein | COG0799 | RsfS | K09710 | |
3NTA6 | Endoribonuclease L-PSP | ACIAD3083 | conserved hypothetical protein | Ribonuc_L-PSP | |||
3NKCC | Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs | ACIAD3085 | dusA | tRNA-dihydrouridine synthase A | COG0042 | Dus | K05539 |
3NR9Y | YjgF/chorismate_mutase-like, putative endoribonuclease | ACIAD3089 | ridA | imine deaminase | YjgF_endoribonc | ||
3NJ7Y | Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP | ACIAD3095 | prfC | peptide chain release factor 3 | COG0480 | GTP_EFTU, GTP_EFTU_D2, RF3_C | K02837 |
3NJJI | Belongs to the class-I aminoacyl-tRNA synthetase family | ACIAD3106 | leuS | leucyl-tRNA synthetase | COG0495 | Anticodon_1, tRNA-synt_1, tRNA-synt_1_2 | K01869 |
3NJNV | Belongs to the RNase T2 family | ACIAD3156 | conserved hypothetical protein | Ribonuclease_T2 | K01166 | ||
3NK7G | Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine | ACIAD3158 | putative tRNA-i(6)A37 modification enzyme (MiaB) | COG0621 | Radical_SAM, TRAM, UPF0004 | K06168 | |
3NMDH | Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA | ACIAD3160 | putative metalloprotease ybeY-like | COG0319 | UPF0054 | K07042 | |
3NJ9W | 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs | ACIAD3179 | rnr | exoribonuclease R | COG0557 | OB_RNB, RNB, S1 | K12573 |
3NN8W | Ribosomal protein L17 | ACIAD3193 | rplQ | 50S ribosomal protein L17 | COG0203 | Ribosomal_L17 | K02879 |
3NJVB | One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit | ACIAD3195 | rpsD | 30S ribosomal protein S4 | COG0522 | Ribosomal_S4, S4 | K02986 |
3NN3C | Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome | ACIAD3196 | rpsK | 30S ribosomal protein S11 | Ribosomal_S11 | ||
3NNKC | Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits | ACIAD3197 | rpsM | 30S ribosomal protein S13 | COG0099 | Ribosomal_S13 | K02952 |
3NQ70 | Belongs to the bacterial ribosomal protein bL36 family | ACIAD3198 | rpmJ | 50S ribosomal protein L36 | Ribosomal_L36 | ||
3NN66 | binds to the 23S rRNA | ACIAD3200 | rplO | 50S ribosomal protein L15 | COG0200 | Ribosomal_L27A | K02876 |
3NPR9 | Ribosomal protein L30 | ACIAD3201 | rpmD | 50S ribosomal protein L30 | COG1841 | Ribosomal_L30 | K02907 |
3NJBV | Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body | ACIAD3202 | rpsE | 30S ribosomal protein S5 | Ribosomal_S5, Ribosomal_S5_C | ||
3NNGJ | This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance | ACIAD3203 | rplR | 50S ribosomal protein L18 | COG0256 | Ribosomal_L18p | K02881 |
3NIFW | This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center | ACIAD3204 | rplF | 50S ribosomal protein L6 | COG0097 | Ribosomal_L6 | K02933 |
3NN47 | One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit | ACIAD3205 | rpsH | 30S ribosomal protein S8 | COG0096 | Ribosomal_S8 | K02994 |
3NNIJ | Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site | ACIAD3206 | rpsN | 30S ribosomal protein S14 | COG0199 | Ribosomal_S14 | K02954 |
3NIKY | This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits | ACIAD3207 | rplE | 50S ribosomal protein L5 | COG0094 | Ribosomal_L5, Ribosomal_L5_C | K02931 |
3NP82 | One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit | ACIAD3208 | rplX | 50S ribosomal protein L24 | COG0198 | KOW, ribosomal_L24 | K02895 |
3NN4P | Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome | ACIAD3209 | rplN | 50S ribosomal protein L14 | COG0093 | Ribosomal_L14 | K02874 |
3NNW9 | One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA | ACIAD3210 | rpsQ | 30S ribosomal protein S17 | COG0186 | Ribosomal_S17 | K02961 |
3NPA8 | Belongs to the universal ribosomal protein uL29 family | ACIAD3211 | rpmC | 50S ribosomal protein L29 | COG0255 | Ribosomal_L29 | K02904 |
3NN5W | Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs | ACIAD3212 | rplP | 50S ribosomal protein L16 | COG0197 | Ribosomal_L16 | K02878 |
3NK5Y | Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation | ACIAD3213 | rpsC | 30S ribosomal protein S3 | COG0092 | KH_2, Ribosomal_S3_C | K02982 |
3NNGH | The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome | ACIAD3214 | rplV | 50S ribosomal protein L22 | COG0091 | Ribosomal_L22 | K02890 |
3NNXA | Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA | ACIAD3215 | rpsS | 30S ribosomal protein S19 | Ribosomal_S19 | ||
3NK9Q | One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity | ACIAD3216 | rplB | 50S ribosomal protein L2 | COG0090 | Ribosomal_L2, Ribosomal_L2_C | K02886 |
3NNHP | One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome | ACIAD3217 | rplW | 50S ribosomal protein L23 | COG0089 | Ribosomal_L23 | K02892 |
3NK1G | Forms part of the polypeptide exit tunnel | ACIAD3218 | rplD | 50S ribosomal protein L4, regulates expression of S10 operon | COG0088 | Ribosomal_L4 | K02926 |
3NJ2J | One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit | ACIAD3219 | rplC | 50S ribosomal protein L3 | COG0087 | Ribosomal_L3 | K02906 |
3NNK0 | Involved in the binding of tRNA to the ribosomes | ACIAD3220 | rpsJ | 30S ribosomal protein S10 | COG0051 | Ribosomal_S10 | K02946 |
3NIRE | glycyl-tRNA synthetase, alpha subunit | ACIAD3268 | glyQ | glycyl-tRNA synthetase, alpha chain | COG0752 | tRNA-synt_2e | K01878 |
3NIHP | Glycyl-tRNA synthetase beta subunit | ACIAD3269 | glyS | glycyl-tRNA synthetase, beta chain | COG0751 | DALR_1, tRNA_synt_2f | K01879 |
3NJN4 | Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs | ACIAD3307 | truB | tRNA pseudouridine 55 synthase | COG0130 | TruB-C_2, TruB_C_2, TruB_N | K03177 |
3NN51 | This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site | ACIAD3310 | rplS | 50S ribosomal protein L19 | COG0335 | Ribosomal_L19 | K02884 |
3NJ5E | Belongs to the RNA methyltransferase TrmD family | ACIAD3311 | trmD | tRNA (guanine-1-)-methyltransferase. | COG0336 | tRNA_m1G_MT | K00554 |
3NJ2R | An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes | ACIAD3312 | rimM | 16S rRNA processing protein | COG0806 | PRC, RimM | K02860 |
3NNWP | Belongs to the bacterial ribosomal protein bS16 family | ACIAD3313 | rpsP | 30S ribosomal protein S16 | COG0228 | Ribosomal_S16 | K02959 |
3NN5J | Endoribonuclease L-PSP | ACIAD3327 | putative 2-iminobutanoate/2-iminopropanoate deaminase (RidA like) | Ribonuc_L-PSP | |||
3NIS5 | Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA | ACIAD3368 | mraW | Ribosomal RNA small subunit methyltransferase H | COG0275 | Methyltransf_5 | K03438 |
3NKI0 | Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) | ACIAD3371 | gltX | glutamyl-tRNA synthetase | COG0008 | tRNA-synt_1c | K01885 |
3NJIX | Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit | ACIAD3478 | conserved hypothetical protein | Methyltrans_RNA | |||
3NN62 | Endoribonuclease L-PSP | ACIAD3493 | conserved hypothetical protein | Ribonuc_L-PSP | |||
3NIHM | Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA | ACIAD3498 | prfB | peptide chain release factor 2 | COG1186 | PCRF, RF-1 | K02836 |
3NNXE | Sigma 54 modulation protein / S30EA ribosomal protein | ACIAD3535 | conserved hypothetical protein | Ribosomal_S30AE | |||
3NN49 | rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality | ACIAD3563 | dtd | D-tyrosyl tRNA(tyr) deacylase | COG1490 | Tyr_Deacylase | K07560 |
3NJJR | Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus | ACIAD3637 | fmt | methionyl-tRNA formyltransferase | COG0223 | Formyl_trans_C, Formyl_trans_N | K00604 |
3NJ2I | Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA | ACIAD3638 | sun | 16S rRNA m5C967 SAM-dependent methyltransferase | COG0144 | Methyltr_RsmB-F, NusB | K03500 |
3NJ32 | Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 | ACIAD3680 | trmE | GTPase involved in tRNA modification and in thiophene and furan oxidation | COG0486 | MMR_HSR1, MnmE_helical, TrmE_N | K03650 |
3NN9R | RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme | ACIAD3683 | rnpA | RNase P, protein C5 component, processes tRNA, 4.5S RNA | COG0594 | Ribonuclease_P | K03536 |
3NPR1 | Belongs to the bacterial ribosomal protein bL34 family | ACIAD3684 | rpmH | 50S ribosomal protein L34 | Ribosomal_L34 |