Loading
Data ...
RNA-Seq analysis
Neisseria meningitidis 8013 (Heidrich et al, 2017, Nucleic Acids Research 45: 6147) : RNAseq Projects
| Mapping Overview | Raw Read Count | Analysis | IGV |
ID-001738_OD=0.5
bwa Version: 0.7.4-r385 dir mRNAseq solexa
| Total read number | 1709935 | 100 % |
Reads quality
|
|---|---|---|---|
| Nb of unmapped reads | 826436 | 48.33 % | |
| Nb of reads mapped at least once | 883499 | 51.67 % | |
| Nb of reads mapped on rRNA | 206950 | 12.10 % | |
| Nb of reliable reads | 577116 | 33.75 % | |
| Nb of reads kept on chromosome NMN | 577116 | 33.75 % | |
| Total read count on genomic objects (except rRNA) for Organism | 493330 | 100 % | |
| Total read count on genomic objects (except rRNA) into chromosome NMN | 493330 | 100 % | |
| Download forward / reverse wig file | Download | ||
ID-001739_OD=0.5_AND_TEX treatment
bwa Version: 0.7.4-r385 dir mRNAseq solexa
| Total read number | 1120646 | 100 % |
Reads quality
|
|---|---|---|---|
| Nb of unmapped reads | 262520 | 23.43 % | |
| Nb of reads mapped at least once | 858126 | 76.57 % | |
| Nb of reads mapped on rRNA | 309538 | 27.62 % | |
| Nb of reliable reads | 501746 | 44.77 % | |
| Nb of reads kept on chromosome NMN | 501746 | 44.77 % | |
| Total read count on genomic objects (except rRNA) for Organism | 264760 | 100 % | |
| Total read count on genomic objects (except rRNA) into chromosome NMN | 264760 | 100 % | |
| Download forward / reverse wig file | Download | ||
ID-001741_OD=1.5_AND_TEX_treatment
bwa Version: 0.7.4-r385 dir mRNAseq solexa
| Total read number | 1283042 | 100 % |
Reads quality
|
|---|---|---|---|
| Nb of unmapped reads | 411102 | 32.04 % | |
| Nb of reads mapped at least once | 871940 | 67.96 % | |
| Nb of reads mapped on rRNA | 226110 | 17.62 % | |
| Nb of reliable reads | 611466 | 47.66 % | |
| Nb of reads kept on chromosome NMN | 611466 | 47.66 % | |
| Total read count on genomic objects (except rRNA) for Organism | 413018 | 100 % | |
| Total read count on genomic objects (except rRNA) into chromosome NMN | 413018 | 100 % | |
| Download forward / reverse wig file | Download | ||
ID-001740_OD=1.5
bwa Version: 0.7.4-r385 dir mRNAseq solexa
| Total read number | 1045829 | 100 % |
Reads quality
|
|---|---|---|---|
| Nb of unmapped reads | 422541 | 40.40 % | |
| Nb of reads mapped at least once | 623288 | 59.60 % | |
| Nb of reads mapped on rRNA | 93059 | 8.90 % | |
| Nb of reliable reads | 499791 | 47.79 % | |
| Nb of reads kept on chromosome NMN | 499791 | 47.79 % | |
| Total read count on genomic objects (except rRNA) for Organism | 445730 | 100 % | |
| Total read count on genomic objects (except rRNA) into chromosome NMN | 445730 | 100 % | |
| Download forward / reverse wig file | Download | ||
