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RNA-Seq analysis

Acinetobacter baumannii ATCC 17978 (Chang et al, 2014, BMC Genomics 15:815) : RNAseq Projects

Mapping Overview

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17978 bwa Version: 0.7.4-r385 RNAseq solexa

Total read number	4193239	100 %	Reads quality
Nb of unmapped reads	57664	1.38 %
Nb of reads mapped at least once	4135575	98.62 %
Nb of reads mapped on rRNA	33605	0.80 %
Nb of reliable reads	4056303	96.73 %
Nb of reads kept on chromosome ABYAL ABYAL	4033584	96.19 %
Nb of reads kept on plasmid p2ABYAL p2ABYAL	15294	0.36 %
Nb of reads kept on plasmid p1ABYAL p1ABYAL	7425	0.18 %
Total read count on genomic objects (except rRNA) for Organism	4050176	100 %
Total read count on genomic objects (except rRNA) into chromosome ABYAL ABYAL	4027184	99.43 %
Total read count on genomic objects (except rRNA) into plasmid p2ABYAL p2ABYAL	15766	0.39 %
Total read count on genomic objects (except rRNA) into plasmid p1ABYAL p1ABYAL	7226	0.18 %
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IPM-2 m bwa Version: 0.7.4-r385 RNAseq solexa

Total read number	5997691	100 %	Reads quality
Nb of unmapped reads	58586	0.98 %
Nb of reads mapped at least once	5939105	99.02 %
Nb of reads mapped on rRNA	61567	1.03 %
Nb of reliable reads	5836534	97.31 %
Nb of reads kept on chromosome ABYAL ABYAL	5785742	96.47 %
Nb of reads kept on plasmid p2ABYAL p2ABYAL	31658	0.53 %
Nb of reads kept on plasmid p1ABYAL p1ABYAL	19134	0.32 %
Total read count on genomic objects (except rRNA) for Organism	5866882	100 %
Total read count on genomic objects (except rRNA) into chromosome ABYAL ABYAL	5816841	99.15 %
Total read count on genomic objects (except rRNA) into plasmid p2ABYAL p2ABYAL	33176	0.57 %
Total read count on genomic objects (except rRNA) into plasmid p1ABYAL p1ABYAL	16865	0.29 %
Download global wig file	Download

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IPM-8 m bwa Version: 0.7.4-r385 RNAseq solexa

Total read number	5966965	100 %	Reads quality
Nb of unmapped reads	47748	0.80 %
Nb of reads mapped at least once	5919217	99.20 %
Nb of reads mapped on rRNA	62780	1.05 %
Nb of reliable reads	5799806	97.20 %
Nb of reads kept on chromosome ABYAL ABYAL	5767519	96.66 %
Nb of reads kept on plasmid p2ABYAL p2ABYAL	20789	0.35 %
Nb of reads kept on plasmid p1ABYAL p1ABYAL	11498	0.19 %
Total read count on genomic objects (except rRNA) for Organism	5870903	100 %
Total read count on genomic objects (except rRNA) into chromosome ABYAL ABYAL	5838764	99.45 %
Total read count on genomic objects (except rRNA) into plasmid p2ABYAL p2ABYAL	21326	0.36 %
Total read count on genomic objects (except rRNA) into plasmid p1ABYAL p1ABYAL	10813	0.18 %
Download global wig file	Download