Experimental Data - MicroScope - Web Interface System & Specialized Databases for (re)Annotation and Analysis of Microbial Genomes

Variant profiling

SYMPA : Evolution Project - SNPs/Indels

Mapping Overview

Raw Read Count

Analysis

IGV

CBM1491-212A16 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	18625178	100 %	Reads quality
Nb of unmapped reads	8857643	47.56 %
Nb of reads mapped at least once	9767535	52.44 %
Nb of reliable reads	9438411	50.68 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	5599683	30.07 %
Nb of reads kept on plasmid RSp NC_003296	3100194	16.65 %
Nb of reads kept on plasmid pRALTA_ pRALTA	738534	3.97 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size
Download global wig file	Download

CBM1152-212B8 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	8916117	100 %	Reads quality
Nb of unmapped reads	2194559	24.61 %
Nb of reads mapped at least once	6721558	75.39 %
Nb of reliable reads	6439172	72.22 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	3818890	42.83 %
Nb of reads kept on plasmid RSp NC_003296	2181263	24.46 %
Nb of reads kept on plasmid pRALTA_ pRALTA	439019	4.92 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size
Download global wig file	Download

CBM1195-212B9 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	24722476	100 %	Reads quality
Nb of unmapped reads	922224	3.73 %
Nb of reads mapped at least once	23800252	96.27 %
Nb of reliable reads	22985822	92.98 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	12815769	51.84 %
Nb of reads kept on plasmid RSp NC_003296	8173275	33.06 %
Nb of reads kept on plasmid pRALTA_ pRALTA	1996778	8.08 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	157,391
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CBM1231-212B10 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	14787307	100 %	Reads quality
Nb of unmapped reads	112035	0.76 %
Nb of reads mapped at least once	14675272	99.24 %
Nb of reliable reads	9343020	63.18 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	5400993	36.52 %
Nb of reads kept on plasmid RSp NC_003296	3230628	21.85 %
Nb of reads kept on plasmid pRALTA_ pRALTA	711399	4.81 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	158,462
Download global wig file	Download

CBM1279-212B11 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	26832018	100 %	Reads quality
Nb of unmapped reads	939581	3.50 %
Nb of reads mapped at least once	25892437	96.50 %
Nb of reliable reads	25018532	93.24 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	13979419	52.1 %
Nb of reads kept on plasmid RSp NC_003296	8999960	33.54 %
Nb of reads kept on plasmid pRALTA_ pRALTA	2039153	7.6 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	155,387
Download global wig file	Download

CBM1316-212B12 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	34450094	100 %	Reads quality
Nb of unmapped reads	1250405	3.63 %
Nb of reads mapped at least once	33199689	96.37 %
Nb of reliable reads	32120504	93.24 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	18038640	52.36 %
Nb of reads kept on plasmid RSp NC_003296	11569686	33.58 %
Nb of reads kept on plasmid pRALTA_ pRALTA	2512178	7.29 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	183,405
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CBM1371-212B13 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	34639812	100 %	Reads quality
Nb of unmapped reads	2023283	5.84 %
Nb of reads mapped at least once	32616529	94.16 %
Nb of reliable reads	30861505	89.09 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	16789467	48.47 %
Nb of reads kept on plasmid RSp NC_003296	10735015	30.99 %
Nb of reads kept on plasmid pRALTA_ pRALTA	3337023	9.63 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	156,389
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CBM1407-212B14 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	27155616	100 %	Reads quality
Nb of unmapped reads	961465	3.54 %
Nb of reads mapped at least once	26194151	96.46 %
Nb of reliable reads	25388937	93.49 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	14544710	53.56 %
Nb of reads kept on plasmid RSp NC_003296	9079325	33.43 %
Nb of reads kept on plasmid pRALTA_ pRALTA	1764902	6.5 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	182,409
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CBM1456-212B15 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	32907606	100 %	Reads quality
Nb of unmapped reads	1180262	3.59 %
Nb of reads mapped at least once	31727344	96.41 %
Nb of reliable reads	30673373	93.21 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	17310898	52.6 %
Nb of reads kept on plasmid RSp NC_003296	10968395	33.33 %
Nb of reads kept on plasmid pRALTA_ pRALTA	2394080	7.28 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	162,370
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CBM1492-212B16 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	18211589	100 %	Reads quality
Nb of unmapped reads	7549644	41.46 %
Nb of reads mapped at least once	10661945	58.54 %
Nb of reliable reads	10202664	56.02 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	5896835	32.38 %
Nb of reads kept on plasmid RSp NC_003296	3447487	18.93 %
Nb of reads kept on plasmid pRALTA_ pRALTA	858342	4.71 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size
Download global wig file	Download

CBM418-212B1 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	21100728	100 %	Reads quality
Nb of unmapped reads	905748	4.29 %
Nb of reads mapped at least once	20194980	95.71 %
Nb of reliable reads	19430356	92.08 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	11118597	52.69 %
Nb of reads kept on plasmid RSp NC_003296	6557033	31.07 %
Nb of reads kept on plasmid pRALTA_ pRALTA	1754726	8.32 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	136,264
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CBM463-212B2 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	22938674	100 %	Reads quality
Nb of unmapped reads	895763	3.91 %
Nb of reads mapped at least once	22042911	96.09 %
Nb of reliable reads	21276336	92.75 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	12175523	53.08 %
Nb of reads kept on plasmid RSp NC_003296	7235912	31.54 %
Nb of reads kept on plasmid pRALTA_ pRALTA	1864901	8.13 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	138,313
Download global wig file	Download

CBM510-212B3 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	33949894	100 %	Reads quality
Nb of unmapped reads	1284191	3.78 %
Nb of reads mapped at least once	32665703	96.22 %
Nb of reliable reads	31543606	92.91 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	18658889	54.96 %
Nb of reads kept on plasmid RSp NC_003296	10733270	31.62 %
Nb of reads kept on plasmid pRALTA_ pRALTA	2151447	6.34 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	155,377
Download global wig file	Download

CBM555-212B4 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	31646856	100 %	Reads quality
Nb of unmapped reads	1246551	3.94 %
Nb of reads mapped at least once	30400305	96.06 %
Nb of reliable reads	29292161	92.56 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	16747774	52.92 %
Nb of reads kept on plasmid RSp NC_003296	10360521	32.74 %
Nb of reads kept on plasmid pRALTA_ pRALTA	2183866	6.9 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	136,390
Download global wig file	Download

CBM592-212B5 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	32515086	100 %	Reads quality
Nb of unmapped reads	1113439	3.42 %
Nb of reads mapped at least once	31401647	96.58 %
Nb of reliable reads	30460297	93.68 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	17936995	55.17 %
Nb of reads kept on plasmid RSp NC_003296	10470367	32.2 %
Nb of reads kept on plasmid pRALTA_ pRALTA	2052935	6.31 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	145,393
Download global wig file	Download

CBM638-212B6 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	27180986	100 %	Reads quality
Nb of unmapped reads	1181677	4.35 %
Nb of reads mapped at least once	25999309	95.65 %
Nb of reliable reads	25070393	92.24 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	14471521	53.24 %
Nb of reads kept on plasmid RSp NC_003296	8328175	30.64 %
Nb of reads kept on plasmid pRALTA_ pRALTA	2270697	8.35 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	156,354
Download global wig file	Download

CBM686-212B7 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	34863306	100 %	Reads quality
Nb of unmapped reads	1957307	5.61 %
Nb of reads mapped at least once	32905999	94.39 %
Nb of reliable reads	31085045	89.16 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	17596071	50.47 %
Nb of reads kept on plasmid RSp NC_003296	10075347	28.9 %
Nb of reads kept on plasmid pRALTA_ pRALTA	3413627	9.79 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	188,426
Download global wig file	Download

CBM1493-212C16 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	18580271	100 %	Reads quality
Nb of unmapped reads	7940452	42.74 %
Nb of reads mapped at least once	10639819	57.26 %
Nb of reliable reads	10193972	54.86 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	6018635	32.39 %
Nb of reads kept on plasmid RSp NC_003296	3386307	18.23 %
Nb of reads kept on plasmid pRALTA_ pRALTA	789030	4.25 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size
Download global wig file	Download

CBM593-212C5 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	30657908	100 %	Reads quality
Nb of unmapped reads	1586333	5.17 %
Nb of reads mapped at least once	29071575	94.83 %
Nb of reliable reads	27653619	90.20 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	15446146	50.38 %
Nb of reads kept on plasmid RSp NC_003296	9280927	30.27 %
Nb of reads kept on plasmid pRALTA_ pRALTA	2926546	9.55 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	173,340
Download global wig file	Download

CBM639-212C6 SSAHA2 version 2.5.1 evolutionPE solexa


Total read number	29622988	100 %	Reads quality
Nb of unmapped reads	552361	1.86 %
Nb of reads mapped at least once	29070627	98.14 %
Nb of reads mapped on rRNA	121198	0.41 %
Nb of reliable reads	27159041	91.68 %
Nb of pair mapped reads	8102808	27.35 %
Nb of properly pair mapped reads	18347670	61.94 %
Nb of unproperly pair mapped reads	1170621	3.95 %
Nb of reads kept on chromosome RSc NC_003295	15151570	51.15 %
Nb of reads kept on plasmid RSp NC_003296	9664860	32.63 %
Nb of reads kept on plasmid pRALTA_ pRALTA	2342611	7.91 %
Total read count on genomic objects (except rRNA) for Organism	27098663	100 %
Total read count on genomic objects (except rRNA) into chromosome RSc NC_003295	15207618	56.12 %
Total read count on genomic objects (except rRNA) into plasmid RSp NC_003296	9736376	35.93 %
Total read count on genomic objects (except rRNA) into plasmid pRALTA_ pRALTA	2154669	7.95 %
Insert Size	200,308
Download global wig file	Download

CBM1154-349G8 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	5648369	100 %	Reads quality
Nb of unmapped reads	39867	0.71 %
Nb of reads mapped at least once	5608502	99.29 %
Nb of reliable reads	5348183	94.69 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	3116274	55.17 %
Nb of reads kept on plasmid RSp NC_003296	1897586	33.6 %
Nb of reads kept on plasmid pRALTA_ pRALTA	334323	5.92 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size
Download global wig file	Download

CBM1197-349G9 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	27523450	100 %	Reads quality
Nb of unmapped reads	1340212	4.87 %
Nb of reads mapped at least once	26183238	95.13 %
Nb of reliable reads	25230366	91.67 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	14915712	54.19 %
Nb of reads kept on plasmid RSp NC_003296	9358244	34 %
Nb of reads kept on plasmid pRALTA_ pRALTA	956410	3.47 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	160,317
Download global wig file	Download

CBM1233-349G10 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	18718254	100 %	Reads quality
Nb of unmapped reads	814605	4.35 %
Nb of reads mapped at least once	17903649	95.65 %
Nb of reliable reads	17074733	91.22 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	9340220	49.9 %
Nb of reads kept on plasmid RSp NC_003296	6257002	33.43 %
Nb of reads kept on plasmid pRALTA_ pRALTA	1477511	7.89 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	185,462
Download global wig file	Download

CBM1281-349G11 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	22893318	100 %	Reads quality
Nb of unmapped reads	966662	4.22 %
Nb of reads mapped at least once	21926656	95.78 %
Nb of reliable reads	20945040	91.49 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	11485671	50.17 %
Nb of reads kept on plasmid RSp NC_003296	7548832	32.97 %
Nb of reads kept on plasmid pRALTA_ pRALTA	1910537	8.35 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	170,453
Download global wig file	Download

CBM1318-349G12 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	18190300	100 %	Reads quality
Nb of unmapped reads	722575	3.97 %
Nb of reads mapped at least once	17467725	96.03 %
Nb of reliable reads	16673756	91.66 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	9198453	50.57 %
Nb of reads kept on plasmid RSp NC_003296	6069112	33.36 %
Nb of reads kept on plasmid pRALTA_ pRALTA	1406191	7.73 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	196,585
Download global wig file	Download

CBM1373-349G13 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	16649554	100 %	Reads quality
Nb of unmapped reads	653595	3.93 %
Nb of reads mapped at least once	15995959	96.07 %
Nb of reliable reads	15286332	91.81 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	8352102	50.16 %
Nb of reads kept on plasmid RSp NC_003296	5695550	34.21 %
Nb of reads kept on plasmid pRALTA_ pRALTA	1238680	7.44 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	201,558
Download global wig file	Download

CBM1409-349G14 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	14622614	100 %	Reads quality
Nb of unmapped reads	563491	3.85 %
Nb of reads mapped at least once	14059123	96.15 %
Nb of reliable reads	13455301	92.02 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	7242957	49.53 %
Nb of reads kept on plasmid RSp NC_003296	4981442	34.07 %
Nb of reads kept on plasmid pRALTA_ pRALTA	1230902	8.42 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	220,511
Download global wig file	Download

CBM1458-349G15 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	33036972	100 %	Reads quality
Nb of unmapped reads	1605929	4.86 %
Nb of reads mapped at least once	31431043	95.14 %
Nb of reliable reads	29949016	90.65 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	16672148	50.47 %
Nb of reads kept on plasmid RSp NC_003296	10460946	31.66 %
Nb of reads kept on plasmid pRALTA_ pRALTA	2815922	8.52 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	190,345
Download global wig file	Download

CBM1494-349G16 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	17767157	100 %	Reads quality
Nb of unmapped reads	8011308	45.09 %
Nb of reads mapped at least once	9755849	54.91 %
Nb of reliable reads	9430791	53.08 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	5459022	30.73 %
Nb of reads kept on plasmid RSp NC_003296	3281616	18.47 %
Nb of reads kept on plasmid pRALTA_ pRALTA	690153	3.88 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size
Download global wig file	Download

CBM420-349G1 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	21144300	100 %	Reads quality
Nb of unmapped reads	894633	4.23 %
Nb of reads mapped at least once	20249667	95.77 %
Nb of reliable reads	19311334	91.33 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	10973992	51.9 %
Nb of reads kept on plasmid RSp NC_003296	6552333	30.99 %
Nb of reads kept on plasmid pRALTA_ pRALTA	1785009	8.44 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	208,520
Download global wig file	Download

CBM465-349G2 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	19116498	100 %	Reads quality
Nb of unmapped reads	757279	3.96 %
Nb of reads mapped at least once	18359219	96.04 %
Nb of reliable reads	17587199	92.00 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	9581682	50.12 %
Nb of reads kept on plasmid RSp NC_003296	6372819	33.34 %
Nb of reads kept on plasmid pRALTA_ pRALTA	1632698	8.54 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	158,399
Download global wig file	Download

CBM512-349G3 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	19906394	100 %	Reads quality
Nb of unmapped reads	672944	3.38 %
Nb of reads mapped at least once	19233450	96.62 %
Nb of reliable reads	18510652	92.99 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	10130466	50.89 %
Nb of reads kept on plasmid RSp NC_003296	6893169	34.63 %
Nb of reads kept on plasmid pRALTA_ pRALTA	1487017	7.47 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	173,444
Download global wig file	Download

CBM557-349G4 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	16987042	100 %	Reads quality
Nb of unmapped reads	586042	3.45 %
Nb of reads mapped at least once	16401000	96.55 %
Nb of reliable reads	15769176	92.83 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	8635607	50.84 %
Nb of reads kept on plasmid RSp NC_003296	5730466	33.73 %
Nb of reads kept on plasmid pRALTA_ pRALTA	1403103	8.26 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	179,470
Download global wig file	Download

CBM594-349G5 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	17406814	100 %	Reads quality
Nb of unmapped reads	676449	3.89 %
Nb of reads mapped at least once	16730365	96.11 %
Nb of reliable reads	16017479	92.02 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	8752601	50.28 %
Nb of reads kept on plasmid RSp NC_003296	5812835	33.39 %
Nb of reads kept on plasmid pRALTA_ pRALTA	1452043	8.34 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	196,465
Download global wig file	Download

CBM640-349G6 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	20329202	100 %	Reads quality
Nb of unmapped reads	775219	3.81 %
Nb of reads mapped at least once	19553983	96.19 %
Nb of reliable reads	18742481	92.19 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	10376365	51.04 %
Nb of reads kept on plasmid RSp NC_003296	6657664	32.75 %
Nb of reads kept on plasmid pRALTA_ pRALTA	1708452	8.4 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	214,424
Download global wig file	Download

CBM688-349G7 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	9791094	100 %	Reads quality
Nb of unmapped reads	43932	0.45 %
Nb of reads mapped at least once	9747162	99.55 %
Nb of reliable reads	7914691	80.84 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	4332032	44.24 %
Nb of reads kept on plasmid RSp NC_003296	2932899	29.95 %
Nb of reads kept on plasmid pRALTA_ pRALTA	649760	6.64 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	176,427
Download global wig file	Download

CBM1495-349H16 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	18404048	100 %	Reads quality
Nb of unmapped reads	8388566	45.58 %
Nb of reads mapped at least once	10015482	54.42 %
Nb of reliable reads	9646956	52.42 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	5536208	30.08 %
Nb of reads kept on plasmid RSp NC_003296	3350682	18.21 %
Nb of reads kept on plasmid pRALTA_ pRALTA	760066	4.13 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size
Download global wig file	Download

CBM641-349H6 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	16923991	100 %	Reads quality
Nb of unmapped reads	102576	0.61 %
Nb of reads mapped at least once	16821415	99.39 %
Nb of reliable reads	10498573	62.03 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	6061940	35.82 %
Nb of reads kept on plasmid RSp NC_003296	3303726	19.52 %
Nb of reads kept on plasmid pRALTA_ pRALTA	1132907	6.69 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	179,312
Download global wig file	Download

CBM689-349H7 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	11274615	100 %	Reads quality
Nb of unmapped reads	87622	0.78 %
Nb of reads mapped at least once	11186993	99.22 %
Nb of reliable reads	6842509	60.69 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	3881083	34.42 %
Nb of reads kept on plasmid RSp NC_003296	2246370	19.92 %
Nb of reads kept on plasmid pRALTA_ pRALTA	715056	6.34 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	150,327
Download global wig file	Download

CBM1496-349I16 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	28351281	100 %	Reads quality
Nb of unmapped reads	17242738	60.82 %
Nb of reads mapped at least once	11108543	39.18 %
Nb of reliable reads	10762742	37.96 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	6302842	22.23 %
Nb of reads kept on plasmid RSp NC_003296	3619970	12.77 %
Nb of reads kept on plasmid pRALTA_ pRALTA	839930	2.96 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size
Download global wig file	Download

CBM422-349I1 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	18617147	100 %	Reads quality
Nb of unmapped reads	126158	0.68 %
Nb of reads mapped at least once	18490989	99.32 %
Nb of reliable reads	11698737	62.84 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	6869745	36.9 %
Nb of reads kept on plasmid RSp NC_003296	3803418	20.43 %
Nb of reads kept on plasmid pRALTA_ pRALTA	1025574	5.51 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	152,355
Download global wig file	Download

CBM467-349I2 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	12524966	100 %	Reads quality
Nb of unmapped reads	84901	0.68 %
Nb of reads mapped at least once	12440065	99.32 %
Nb of reliable reads	7805012	62.32 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	4268634	34.08 %
Nb of reads kept on plasmid RSp NC_003296	2637638	21.06 %
Nb of reads kept on plasmid pRALTA_ pRALTA	898740	7.18 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	185,413
Download global wig file	Download

CBM1157-356M8 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	8595141	100 %	Reads quality
Nb of unmapped reads	1808758	21.04 %
Nb of reads mapped at least once	6786383	78.96 %
Nb of reliable reads	6505391	75.69 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	3792387	44.12 %
Nb of reads kept on plasmid RSp NC_003296	2325457	27.06 %
Nb of reads kept on plasmid pRALTA_ pRALTA	387547	4.51 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size
Download global wig file	Download

CBM1236_356M10 SSAHA2 version 2.5.1 evolutionPE solexa


Total read number	17686512	100 %	Reads quality
Nb of unmapped reads	140512	0.79 %
Nb of reads mapped at least once	17546000	99.21 %
Nb of reads mapped on rRNA	9023	0.05 %
Nb of reliable reads	16914180	95.63 %
Nb of pair mapped reads	21794868	123.23 %
Nb of properly pair mapped reads	28307688	160.05 %
Nb of unproperly pair mapped reads	1996470	11.29 %
Nb of reads kept on chromosome RSc NC_003295	9902123	55.99 %
Nb of reads kept on plasmid RSp NC_003296	6242774	35.3 %
Nb of reads kept on plasmid pRALTA_ pRALTA	769283	4.35 %
Total read count on genomic objects (except rRNA) for Organism	17948976	100 %
Total read count on genomic objects (except rRNA) into chromosome RSc NC_003295	10571832	58.9 %
Total read count on genomic objects (except rRNA) into plasmid RSp NC_003296	6612453	36.84 %
Total read count on genomic objects (except rRNA) into plasmid pRALTA_ pRALTA	764691	4.26 %
Insert Size	300,427
Download global wig file	Download

CBM1321-356M12 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	19252488	100 %	Reads quality
Nb of unmapped reads	737856	3.83 %
Nb of reads mapped at least once	18514632	96.17 %
Nb of reliable reads	17750240	92.20 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	9133605	47.44 %
Nb of reads kept on plasmid RSp NC_003296	6780180	35.22 %
Nb of reads kept on plasmid pRALTA_ pRALTA	1836455	9.54 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	133,302
Download global wig file	Download

CBM1412_356M14 SSAHA2 version 2.5.1 evolutionPE solexa


Total read number	22008230	100 %	Reads quality
Nb of unmapped reads	177033	0.80 %
Nb of reads mapped at least once	21831197	99.20 %
Nb of reads mapped on rRNA	70677	0.32 %
Nb of reliable reads	20820308	94.60 %
Nb of pair mapped reads	26237214	119.22 %
Nb of properly pair mapped reads	35384802	160.78 %
Nb of unproperly pair mapped reads	2249208	10.22 %
Nb of reads kept on chromosome RSc NC_003295	11657210	52.97 %
Nb of reads kept on plasmid RSp NC_003296	7601217	34.54 %
Nb of reads kept on plasmid pRALTA_ pRALTA	1561881	7.1 %
Total read count on genomic objects (except rRNA) for Organism	21930865	100 %
Total read count on genomic objects (except rRNA) into chromosome RSc NC_003295	12386309	56.48 %
Total read count on genomic objects (except rRNA) into plasmid RSp NC_003296	8024602	36.59 %
Total read count on genomic objects (except rRNA) into plasmid pRALTA_ pRALTA	1519954	6.93 %
Insert Size	300,427
Download global wig file	Download

CBM1497-356M16 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	10053744	100 %	Reads quality
Nb of unmapped reads	36828	0.37 %
Nb of reads mapped at least once	10016916	99.63 %
Nb of reliable reads	9673052	96.21 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	5466756	54.38 %
Nb of reads kept on plasmid RSp NC_003296	3478163	34.6 %
Nb of reads kept on plasmid pRALTA_ pRALTA	728133	7.24 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size
Download global wig file	Download

CBM468_356M2 SSAHA2 version 2.5.1 evolutionPE solexa


Total read number	16898476	100 %	Reads quality
Nb of unmapped reads	157101	0.93 %
Nb of reads mapped at least once	16741375	99.07 %
Nb of reads mapped on rRNA	58356	0.35 %
Nb of reliable reads	15961690	94.46 %
Nb of pair mapped reads	21322104	126.18 %
Nb of properly pair mapped reads	25905510	153.30 %
Nb of unproperly pair mapped reads	1687743	9.99 %
Nb of reads kept on chromosome RSc NC_003295	8796433	52.05 %
Nb of reads kept on plasmid RSp NC_003296	5921774	35.04 %
Nb of reads kept on plasmid pRALTA_ pRALTA	1243483	7.36 %
Total read count on genomic objects (except rRNA) for Organism	16801130	100 %
Total read count on genomic objects (except rRNA) into chromosome RSc NC_003295	9342962	55.61 %
Total read count on genomic objects (except rRNA) into plasmid RSp NC_003296	6248965	37.19 %
Total read count on genomic objects (except rRNA) into plasmid pRALTA_ pRALTA	1209203	7.2 %
Insert Size	300,422
Download global wig file	Download

CBM560-356M4 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	20037846	100 %	Reads quality
Nb of unmapped reads	730469	3.65 %
Nb of reads mapped at least once	19307377	96.35 %
Nb of reliable reads	18540077	92.53 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	10317893	51.49 %
Nb of reads kept on plasmid RSp NC_003296	6455959	32.22 %
Nb of reads kept on plasmid pRALTA_ pRALTA	1766225	8.81 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	124,311
Download global wig file	Download

CBM643_356M6 SSAHA2 version 2.5.1 evolutionPE solexa


Total read number	16108552	100 %	Reads quality
Nb of unmapped reads	151347	0.94 %
Nb of reads mapped at least once	15957205	99.06 %
Nb of reads mapped on rRNA	43608	0.27 %
Nb of reliable reads	15242008	94.62 %
Nb of pair mapped reads	19058700	118.31 %
Nb of properly pair mapped reads	25999716	161.40 %
Nb of unproperly pair mapped reads	1741275	10.81 %
Nb of reads kept on chromosome RSc NC_003295	8646540	53.68 %
Nb of reads kept on plasmid RSp NC_003296	5516586	34.25 %
Nb of reads kept on plasmid pRALTA_ pRALTA	1078882	6.7 %
Total read count on genomic objects (except rRNA) for Organism	16072999	100 %
Total read count on genomic objects (except rRNA) into chromosome RSc NC_003295	9192596	57.19 %
Total read count on genomic objects (except rRNA) into plasmid RSp NC_003296	5827292	36.26 %
Total read count on genomic objects (except rRNA) into plasmid pRALTA_ pRALTA	1053111	6.55 %
Insert Size	300,435
Download global wig file	Download

CBM1498-356N16 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	16805105	100 %	Reads quality
Nb of unmapped reads	7423565	44.17 %
Nb of reads mapped at least once	9381540	55.83 %
Nb of reliable reads	9099263	54.15 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	5517685	32.83 %
Nb of reads kept on plasmid RSp NC_003296	3012633	17.93 %
Nb of reads kept on plasmid pRALTA_ pRALTA	568945	3.39 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size
Download global wig file	Download

CBM2180-212D16 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	15253143	100 %	Reads quality
Nb of unmapped reads	78160	0.51 %
Nb of reads mapped at least once	15174983	99.49 %
Nb of reliable reads	12100460	79.33 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	6816004	44.69 %
Nb of reads kept on plasmid RSp NC_003296	4250611	27.87 %
Nb of reads kept on plasmid pRALTA_ pRALTA	1033845	6.78 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	168,377
Download global wig file	Download

CBM2182-212F16 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	29215600	100 %	Reads quality
Nb of unmapped reads	1061134	3.63 %
Nb of reads mapped at least once	28154466	96.37 %
Nb of reliable reads	27010456	92.45 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	15582941	53.34 %
Nb of reads kept on plasmid RSp NC_003296	9170263	31.39 %
Nb of reads kept on plasmid pRALTA_ pRALTA	2257252	7.73 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	178,457
Download global wig file	Download

CBM2183-349J16 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	14163484	100 %	Reads quality
Nb of unmapped reads	528350	3.73 %
Nb of reads mapped at least once	13635134	96.27 %
Nb of reliable reads	13160311	92.92 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	7731157	54.59 %
Nb of reads kept on plasmid RSp NC_003296	4307053	30.41 %
Nb of reads kept on plasmid pRALTA_ pRALTA	1122101	7.92 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	126,359
Download global wig file	Download

CBM1125_349K4 SSAHA2 version 2.5.1 evolutionPE solexa


Total read number	14200300	100 %	Reads quality
Nb of unmapped reads	163448	1.15 %
Nb of reads mapped at least once	14036852	98.85 %
Nb of reads mapped on rRNA	45887	0.32 %
Nb of reliable reads	13446424	94.69 %
Nb of pair mapped reads	16877022	118.85 %
Nb of properly pair mapped reads	22816650	160.68 %
Nb of unproperly pair mapped reads	2667069	18.78 %
Nb of reads kept on chromosome RSc NC_003295	7797737	54.91 %
Nb of reads kept on plasmid RSp NC_003296	4740773	33.39 %
Nb of reads kept on plasmid pRALTA_ pRALTA	907914	6.39 %
Total read count on genomic objects (except rRNA) for Organism	14176077	100 %
Total read count on genomic objects (except rRNA) into chromosome RSc NC_003295	8283516	58.43 %
Total read count on genomic objects (except rRNA) into plasmid RSp NC_003296	5005483	35.31 %
Total read count on genomic objects (except rRNA) into plasmid pRALTA_ pRALTA	887078	6.26 %
Insert Size	300,430
Download global wig file	Download

CBM1207_349K5 SSAHA2 version 2.5.1 evolutionPE solexa


Total read number	16521556	100 %	Reads quality
Nb of unmapped reads	226315	1.37 %
Nb of reads mapped at least once	16295241	98.63 %
Nb of reads mapped on rRNA	15587	0.09 %
Nb of reliable reads	15680896	94.91 %
Nb of pair mapped reads	20303220	122.89 %
Nb of properly pair mapped reads	25938966	157.00 %
Nb of unproperly pair mapped reads	2380869	14.41 %
Nb of reads kept on chromosome RSc NC_003295	9292205	56.24 %
Nb of reads kept on plasmid RSp NC_003296	5604595	33.92 %
Nb of reads kept on plasmid pRALTA_ pRALTA	784096	4.75 %
Total read count on genomic objects (except rRNA) for Organism	16618016	100 %
Total read count on genomic objects (except rRNA) into chromosome RSc NC_003295	9907670	59.62 %
Total read count on genomic objects (except rRNA) into plasmid RSp NC_003296	5934440	35.71 %
Total read count on genomic objects (except rRNA) into plasmid pRALTA_ pRALTA	775906	4.67 %
Insert Size	300,425
Download global wig file	Download

CBM1291_349K6 SSAHA2 version 2.5.1 evolutionPE solexa


Total read number	13649526	100 %	Reads quality
Nb of unmapped reads	117560	0.86 %
Nb of reads mapped at least once	13531966	99.14 %
Nb of reads mapped on rRNA	8519	0.06 %
Nb of reliable reads	13054158	95.64 %
Nb of pair mapped reads	16408860	120.22 %
Nb of properly pair mapped reads	22279674	163.23 %
Nb of unproperly pair mapped reads	1504635	11.02 %
Nb of reads kept on chromosome RSc NC_003295	7845126	57.48 %
Nb of reads kept on plasmid RSp NC_003296	4627798	33.9 %
Nb of reads kept on plasmid pRALTA_ pRALTA	581234	4.26 %
Total read count on genomic objects (except rRNA) for Organism	13854707	100 %
Total read count on genomic objects (except rRNA) into chromosome RSc NC_003295	8372960	60.43 %
Total read count on genomic objects (except rRNA) into plasmid RSp NC_003296	4904512	35.4 %
Total read count on genomic objects (except rRNA) into plasmid pRALTA_ pRALTA	577235	4.17 %
Insert Size	300,430
Download global wig file	Download

CBM1383_349K7_v2 SSAHA2 version 2.5.1 evolutionPE solexa


Total read number	610216	100 %	Reads quality
Nb of unmapped reads	25543	4.19 %
Nb of reads mapped at least once	584673	95.81 %
Nb of reads mapped on rRNA	2019	0.33 %
Nb of reliable reads	558918	91.59 %
Nb of pair mapped reads	470832	77.16 %
Nb of properly pair mapped reads	1150758	188.58 %
Nb of unproperly pair mapped reads	143670	23.54 %
Nb of reads kept on chromosome RSc NC_003295	325383	53.32 %
Nb of reads kept on plasmid RSp NC_003296	192605	31.56 %
Nb of reads kept on plasmid pRALTA_ pRALTA	40930	6.71 %
Total read count on genomic objects (except rRNA) for Organism	588985	100 %
Total read count on genomic objects (except rRNA) into chromosome RSc NC_003295	345848	58.72 %
Total read count on genomic objects (except rRNA) into plasmid RSp NC_003296	203154	34.49 %
Total read count on genomic objects (except rRNA) into plasmid pRALTA_ pRALTA	39983	6.79 %
Insert Size	300,502
Download global wig file	Download

CBM1468-349K8 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	10593324	100 %	Reads quality
Nb of unmapped reads	37051	0.35 %
Nb of reads mapped at least once	10556273	99.65 %
Nb of reliable reads	10190143	96.19 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	5959559	56.26 %
Nb of reads kept on plasmid RSp NC_003296	3444180	32.51 %
Nb of reads kept on plasmid pRALTA_ pRALTA	786404	7.42 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size
Download global wig file	Download

CBM1527_349K9 SSAHA2 version 2.5.1 evolutionPE solexa


Total read number	18800156	100 %	Reads quality
Nb of unmapped reads	154202	0.82 %
Nb of reads mapped at least once	18645954	99.18 %
Nb of reads mapped on rRNA	2690	0.01 %
Nb of reliable reads	18174950	96.67 %
Nb of pair mapped reads	21944028	116.72 %
Nb of properly pair mapped reads	31959144	169.99 %
Nb of unproperly pair mapped reads	2038722	10.84 %
Nb of reads kept on chromosome RSc NC_003295	10995747	58.49 %
Nb of reads kept on plasmid RSp NC_003296	6639302	35.32 %
Nb of reads kept on plasmid pRALTA_ pRALTA	539901	2.87 %
Total read count on genomic objects (except rRNA) for Organism	19353844	100 %
Total read count on genomic objects (except rRNA) into chromosome RSc NC_003295	11765455	60.79 %
Total read count on genomic objects (except rRNA) into plasmid RSp NC_003296	7045157	36.4 %
Total read count on genomic objects (except rRNA) into plasmid pRALTA_ pRALTA	543232	2.81 %
Insert Size	300,433
Download global wig file	Download

CBM1612_349K10 SSAHA2 version 2.5.1 evolutionPE solexa


Total read number	17338392	100 %	Reads quality
Nb of unmapped reads	137239	0.79 %
Nb of reads mapped at least once	17201153	99.21 %
Nb of reads mapped on rRNA	6952	0.04 %
Nb of reliable reads	16646958	96.01 %
Nb of pair mapped reads	23478330	135.41 %
Nb of properly pair mapped reads	25920042	149.50 %
Nb of unproperly pair mapped reads	1591947	9.18 %
Nb of reads kept on chromosome RSc NC_003295	10065764	58.05 %
Nb of reads kept on plasmid RSp NC_003296	5906012	34.06 %
Nb of reads kept on plasmid pRALTA_ pRALTA	675182	3.89 %
Total read count on genomic objects (except rRNA) for Organism	17697815	100 %
Total read count on genomic objects (except rRNA) into chromosome RSc NC_003295	10759863	60.8 %
Total read count on genomic objects (except rRNA) into plasmid RSp NC_003296	6264248	35.4 %
Total read count on genomic objects (except rRNA) into plasmid pRALTA_ pRALTA	673704	3.81 %
Insert Size	300,412
Download global wig file	Download

CBM1660_349K11 SSAHA2 version 2.5.1 evolutionPE solexa


Total read number	12136972	100 %	Reads quality
Nb of unmapped reads	77323	0.64 %
Nb of reads mapped at least once	12059649	99.36 %
Nb of reads mapped on rRNA	6767	0.06 %
Nb of reliable reads	11640001	95.91 %
Nb of pair mapped reads	16645632	137.15 %
Nb of properly pair mapped reads	17897646	147.46 %
Nb of unproperly pair mapped reads	1099320	9.06 %
Nb of reads kept on chromosome RSc NC_003295	6950248	57.27 %
Nb of reads kept on plasmid RSp NC_003296	4192264	34.54 %
Nb of reads kept on plasmid pRALTA_ pRALTA	497489	4.1 %
Total read count on genomic objects (except rRNA) for Organism	12358956	100 %
Total read count on genomic objects (except rRNA) into chromosome RSc NC_003295	7421174	60.05 %
Total read count on genomic objects (except rRNA) into plasmid RSp NC_003296	4442771	35.95 %
Total read count on genomic objects (except rRNA) into plasmid pRALTA_ pRALTA	495011	4.01 %
Insert Size	300,406
Download global wig file	Download

CBM1724_349K12 SSAHA2 version 2.5.1 evolutionPE solexa


Total read number	9465402	100 %	Reads quality
Nb of unmapped reads	84206	0.89 %
Nb of reads mapped at least once	9381196	99.11 %
Nb of reads mapped on rRNA	32763	0.35 %
Nb of reliable reads	8977573	94.85 %
Nb of pair mapped reads	12714186	134.32 %
Nb of properly pair mapped reads	13866072	146.49 %
Nb of unproperly pair mapped reads	850221	8.98 %
Nb of reads kept on chromosome RSc NC_003295	5152888	54.44 %
Nb of reads kept on plasmid RSp NC_003296	3226416	34.09 %
Nb of reads kept on plasmid pRALTA_ pRALTA	598269	6.32 %
Total read count on genomic objects (except rRNA) for Organism	9459882	100 %
Total read count on genomic objects (except rRNA) into chromosome RSc NC_003295	5471952	57.84 %
Total read count on genomic objects (except rRNA) into plasmid RSp NC_003296	3403834	35.98 %
Total read count on genomic objects (except rRNA) into plasmid pRALTA_ pRALTA	584096	6.17 %
Insert Size	300,410
Download global wig file	Download

CBM1808_349K13 SSAHA2 version 2.5.1 evolutionPE solexa


Total read number	15770550	100 %	Reads quality
Nb of unmapped reads	132003	0.84 %
Nb of reads mapped at least once	15638547	99.16 %
Nb of reads mapped on rRNA	1223	0.01 %
Nb of reliable reads	15323144	97.16 %
Nb of pair mapped reads	19662036	124.68 %
Nb of properly pair mapped reads	25787388	163.52 %
Nb of unproperly pair mapped reads	1724076	10.93 %
Nb of reads kept on chromosome RSc NC_003295	9344276	59.25 %
Nb of reads kept on plasmid RSp NC_003296	5638809	35.76 %
Nb of reads kept on plasmid pRALTA_ pRALTA	340059	2.16 %
Total read count on genomic objects (except rRNA) for Organism	16331196	100 %
Total read count on genomic objects (except rRNA) into chromosome RSc NC_003295	10003631	61.25 %
Total read count on genomic objects (except rRNA) into plasmid RSp NC_003296	5983579	36.64 %
Total read count on genomic objects (except rRNA) into plasmid pRALTA_ pRALTA	343986	2.11 %
Insert Size	300,421
Download global wig file	Download

CBM2024_349K14 SSAHA2 version 2.5.1 evolutionPE solexa


Total read number	14082340	100 %	Reads quality
Nb of unmapped reads	101324	0.72 %
Nb of reads mapped at least once	13981016	99.28 %
Nb of reads mapped on rRNA	969	0.01 %
Nb of reliable reads	13652727	96.95 %
Nb of pair mapped reads	18289374	129.87 %
Nb of properly pair mapped reads	22262400	158.09 %
Nb of unproperly pair mapped reads	1363173	9.68 %
Nb of reads kept on chromosome RSc NC_003295	8344566	59.26 %
Nb of reads kept on plasmid RSp NC_003296	4954130	35.18 %
Nb of reads kept on plasmid pRALTA_ pRALTA	354031	2.51 %
Total read count on genomic objects (except rRNA) for Organism	14547160	100 %
Total read count on genomic objects (except rRNA) into chromosome RSc NC_003295	8930480	61.39 %
Total read count on genomic objects (except rRNA) into plasmid RSp NC_003296	5258140	36.15 %
Total read count on genomic objects (except rRNA) into plasmid pRALTA_ pRALTA	358540	2.46 %
Insert Size	300,416
Download global wig file	Download

CBM2126_349K15 SSAHA2 version 2.5.1 evolutionPE solexa


Total read number	16656910	100 %	Reads quality
Nb of unmapped reads	104229	0.63 %
Nb of reads mapped at least once	16552681	99.37 %
Nb of reads mapped on rRNA	4237	0.03 %
Nb of reliable reads	16026659	96.22 %
Nb of pair mapped reads	21807912	130.92 %
Nb of properly pair mapped reads	25761894	154.66 %
Nb of unproperly pair mapped reads	1654425	9.93 %
Nb of reads kept on chromosome RSc NC_003295	9735933	58.45 %
Nb of reads kept on plasmid RSp NC_003296	5659986	33.98 %
Nb of reads kept on plasmid pRALTA_ pRALTA	630740	3.79 %
Total read count on genomic objects (except rRNA) for Organism	17035192	100 %
Total read count on genomic objects (except rRNA) into chromosome RSc NC_003295	10399951	61.05 %
Total read count on genomic objects (except rRNA) into plasmid RSp NC_003296	6002760	35.24 %
Total read count on genomic objects (except rRNA) into plasmid pRALTA_ pRALTA	632481	3.71 %
Insert Size	300,417
Download global wig file	Download

CBM2184-349K16 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	20954272	100 %	Reads quality
Nb of unmapped reads	704567	3.36 %
Nb of reads mapped at least once	20249705	96.64 %
Nb of reliable reads	19487978	93.00 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	10953699	52.27 %
Nb of reads kept on plasmid RSp NC_003296	6790925	32.41 %
Nb of reads kept on plasmid pRALTA_ pRALTA	1743354	8.32 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	181,453
Download global wig file	Download

CBM475_349K1 SSAHA2 version 2.5.1 evolutionPE solexa


Total read number	7330988	100 %	Reads quality
Nb of unmapped reads	51733	0.71 %
Nb of reads mapped at least once	7279255	99.29 %
Nb of reads mapped on rRNA	23861	0.33 %
Nb of reliable reads	6942492	94.70 %
Nb of pair mapped reads	9179592	125.22 %
Nb of properly pair mapped reads	11387772	155.34 %
Nb of unproperly pair mapped reads	717525	9.79 %
Nb of reads kept on chromosome RSc NC_003295	4062665	55.42 %
Nb of reads kept on plasmid RSp NC_003296	2356294	32.14 %
Nb of reads kept on plasmid pRALTA_ pRALTA	523533	7.14 %
Total read count on genomic objects (except rRNA) for Organism	7320474	100 %
Total read count on genomic objects (except rRNA) into chromosome RSc NC_003295	4319794	59.01 %
Total read count on genomic objects (except rRNA) into plasmid RSp NC_003296	2490341	34.02 %
Total read count on genomic objects (except rRNA) into plasmid pRALTA_ pRALTA	510339	6.97 %
Insert Size	300,423
Download global wig file	Download

CBM567_349K2 SSAHA2 version 2.5.1 evolutionPE solexa


Total read number	11992706	100 %	Reads quality
Nb of unmapped reads	114139	0.95 %
Nb of reads mapped at least once	11878567	99.05 %
Nb of reads mapped on rRNA	10206	0.09 %
Nb of reliable reads	11332729	94.50 %
Nb of pair mapped reads	14089308	117.48 %
Nb of properly pair mapped reads	19434822	162.06 %
Nb of unproperly pair mapped reads	1272558	10.61 %
Nb of reads kept on chromosome RSc NC_003295	6756741	56.34 %
Nb of reads kept on plasmid RSp NC_003296	3873781	32.3 %
Nb of reads kept on plasmid pRALTA_ pRALTA	702207	5.86 %
Total read count on genomic objects (except rRNA) for Organism	12002169	100 %
Total read count on genomic objects (except rRNA) into chromosome RSc NC_003295	7206566	60.04 %
Total read count on genomic objects (except rRNA) into plasmid RSp NC_003296	4101805	34.18 %
Total read count on genomic objects (except rRNA) into plasmid pRALTA_ pRALTA	693798	5.78 %
Insert Size	300,432
Download global wig file	Download

CBM650_349K3 SSAHA2 version 2.5.1 evolutionPE solexa


Total read number	18796074	100 %	Reads quality
Nb of unmapped reads	134103	0.71 %
Nb of reads mapped at least once	18661971	99.29 %
Nb of reads mapped on rRNA	55962	0.30 %
Nb of reliable reads	17804856	94.73 %
Nb of pair mapped reads	22789110	121.24 %
Nb of properly pair mapped reads	29940774	159.29 %
Nb of unproperly pair mapped reads	1869354	9.95 %
Nb of reads kept on chromosome RSc NC_003295	10478044	55.75 %
Nb of reads kept on plasmid RSp NC_003296	6028968	32.08 %
Nb of reads kept on plasmid pRALTA_ pRALTA	1297844	6.9 %
Total read count on genomic objects (except rRNA) for Organism	18780870	100 %
Total read count on genomic objects (except rRNA) into chromosome RSc NC_003295	11145344	59.34 %
Total read count on genomic objects (except rRNA) into plasmid RSp NC_003296	6370146	33.92 %
Total read count on genomic objects (except rRNA) into plasmid pRALTA_ pRALTA	1265380	6.74 %
Insert Size	300,428
Download global wig file	Download

CBM2185-349L16 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	10696618	100 %	Reads quality
Nb of unmapped reads	48098	0.45 %
Nb of reads mapped at least once	10648520	99.55 %
Nb of reliable reads	8592991	80.33 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	5010103	46.84 %
Nb of reads kept on plasmid RSp NC_003296	2836068	26.51 %
Nb of reads kept on plasmid pRALTA_ pRALTA	746820	6.98 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	169,419
Download global wig file	Download

CBM1752-356S16 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	23717843	100 %	Reads quality
Nb of unmapped reads	13205231	55.68 %
Nb of reads mapped at least once	10512612	44.32 %
Nb of reliable reads	10237974	43.17 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	6210164	26.18 %
Nb of reads kept on plasmid RSp NC_003296	3405632	14.36 %
Nb of reads kept on plasmid pRALTA_ pRALTA	622178	2.62 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	0
Download global wig file	Download

CBM1380_212E7 SSAHA2 version 2.5.1 evolutionPE solexa


Total read number	16716570	100 %	Reads quality
Nb of unmapped reads	122833	0.73 %
Nb of reads mapped at least once	16593737	99.27 %
Nb of reads mapped on rRNA	2625	0.02 %
Nb of reliable reads	16144444	96.58 %
Nb of pair mapped reads	21130494	126.40 %
Nb of properly pair mapped reads	26772390	160.15 %
Nb of unproperly pair mapped reads	1719261	10.28 %
Nb of reads kept on chromosome RSc NC_003295	10132161	60.61 %
Nb of reads kept on plasmid RSp NC_003296	5513007	32.98 %
Nb of reads kept on plasmid pRALTA_ pRALTA	499276	2.99 %
Total read count on genomic objects (except rRNA) for Organism	17189237	100 %
Total read count on genomic objects (except rRNA) into chromosome RSc NC_003295	10835175	63.03 %
Total read count on genomic objects (except rRNA) into plasmid RSp NC_003296	5851582	34.04 %
Total read count on genomic objects (except rRNA) into plasmid pRALTA_ pRALTA	502480	2.92 %
Insert Size	300,421
Download global wig file	Download

CBM1465-212E8 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	28111839	100 %	Reads quality
Nb of unmapped reads	16997615	60.46 %
Nb of reads mapped at least once	11114224	39.54 %
Nb of reliable reads	10781617	38.35 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	6473068	23.03 %
Nb of reads kept on plasmid RSp NC_003296	3488579	12.41 %
Nb of reads kept on plasmid pRALTA_ pRALTA	819970	2.92 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size
Download global wig file	Download

CBM1721-212E12 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of pair mapped reads
Total read number	284600	100 %	Reads quality
Nb of unmapped reads	3810	1.34 %
Nb of reads mapped at least once	280790	98.66 %
Nb of reads mapped on rRNA	383	0.13 %
Nb of reliable reads	271257	95.31 %
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	167378	58.81 %
Nb of reads kept on plasmid RSp NC_003296	89195	31.34 %
Nb of reads kept on plasmid pRALTA_ pRALTA	14684	5.16 %
Total read count on genomic objects (except rRNA) for Organism	325461	100 %
Total read count on genomic objects (except rRNA) into chromosome RSc NC_003295	202627	62.26 %
Total read count on genomic objects (except rRNA) into plasmid RSp NC_003296	105709	32.48 %
Total read count on genomic objects (except rRNA) into plasmid pRALTA_ pRALTA	17125	5.26 %

Insert Size	600,778
Download global wig file	Download

CBM1805-212E13 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of pair mapped reads
Total read number	671654	100 %	Reads quality
Nb of unmapped reads	19279	2.87 %
Nb of reads mapped at least once	652375	97.13 %
Nb of reads mapped on rRNA	2303	0.34 %
Nb of reliable reads	628293	93.54 %
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	380399	56.64 %
Nb of reads kept on plasmid RSp NC_003296	204085	30.39 %
Nb of reads kept on plasmid pRALTA_ pRALTA	43809	6.52 %
Total read count on genomic objects (except rRNA) for Organism	751807	100 %
Total read count on genomic objects (except rRNA) into chromosome RSc NC_003295	459813	61.16 %
Total read count on genomic objects (except rRNA) into plasmid RSp NC_003296	241834	32.17 %
Total read count on genomic objects (except rRNA) into plasmid pRALTA_ pRALTA	50160	6.67 %

Insert Size	600,841
Download global wig file	Download

CBM2181-212E16 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	27628618	100 %	Reads quality
Nb of unmapped reads	973992	3.53 %
Nb of reads mapped at least once	26654626	96.47 %
Nb of reliable reads	25617322	92.72 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	15088791	54.61 %
Nb of reads kept on plasmid RSp NC_003296	8373672	30.31 %
Nb of reads kept on plasmid pRALTA_ pRALTA	2154859	7.8 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	159,421
Download global wig file	Download

CBM749-212E4 SSAHA2 version 2.5.1 evolution solexa

Total read number	32429312	100 %	Reads quality
Nb of unmapped reads	392612	1.21 %
Nb of reads mapped at least once	32036700	98.79 %
Nb of reads mapped on rRNA	104952	0.32 %
Nb of reliable reads	30665029	94.56 %
Nb of reads kept on chromosome RSc NC_003295	18474430	56.97 %
Nb of reads kept on plasmid RSp NC_003296	10151543	31.3 %
Nb of reads kept on plasmid pRALTA_ pRALTA	2039056	6.29 %
Total read count on genomic objects (except rRNA) for Organism	32371555	100 %
Total read count on genomic objects (except rRNA) into chromosome RSc NC_003295	19649931	60.7 %
Total read count on genomic objects (except rRNA) into plasmid RSp NC_003296	10731407	33.15 %
Total read count on genomic objects (except rRNA) into plasmid pRALTA_ pRALTA	1990217	6.15 %
Download global wig file	Download

CBM2186-356P16 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	21289964	100 %	Reads quality
Nb of unmapped reads	682666	3.21 %
Nb of reads mapped at least once	20607298	96.79 %
Nb of reliable reads	19894333	93.44 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	11741917	55.15 %
Nb of reads kept on plasmid RSp NC_003296	6737689	31.65 %
Nb of reads kept on plasmid pRALTA_ pRALTA	1414727	6.65 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	162,371
Download global wig file	Download

CBM130-356T16 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	27093036	100 %	Reads quality
Nb of unmapped reads	907004	3.35 %
Nb of reads mapped at least once	26186032	96.65 %
Nb of reliable reads	25207292	93.04 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	14960598	55.22 %
Nb of reads kept on plasmid RSp NC_003296	8296193	30.62 %
Nb of reads kept on plasmid pRALTA_ pRALTA	1950501	7.2 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	156,405
Download global wig file	Download

CBM2187-356R16 SSAHA2 version 2.5.1 evolutionPE solexa

Nb of reads mapped on rRNA
Total read number	20009470	100 %	Reads quality
Nb of unmapped reads	602257	3.01 %
Nb of reads mapped at least once	19407213	96.99 %
Nb of reliable reads	18830922	94.11 %
Nb of pair mapped reads
Nb of properly pair mapped reads
Nb of unproperly pair mapped reads
Nb of reads kept on chromosome RSc NC_003295	11141298	55.68 %
Nb of reads kept on plasmid RSp NC_003296	6350570	31.74 %
Nb of reads kept on plasmid pRALTA_ pRALTA	1339054	6.69 %
Total read count on genomic objects (except rRNA) for Organism	NAN	100 %

Insert Size	147,449
Download global wig file	Download