Experimental Data - MicroScope - Web Interface System & Specialized Databases for (re)Annotation and Analysis of Microbial Genomes

Variant profiling

SYMPA : Evolution Project - SNPs/Indels

Mapping Overview

Raw Read Count

Analysis

IGV

1. Choose an Analysis Type

Analysis: Comparative Parallelism Graphical

Focus on:

Clones grouped by lineage
Clones grouped by timepoint
Lineages

2. Manage your Analysis Query

Reference sequence:

Find mutational events:

Present in:	Absent from:
(Select at least one)

ALL selected clones

Score parameters:

Score			Score
HQ Reads			HQ Reads

With these restrictions:

Events Type :

Where ?

Technology :

N/A

Genome Position from

to bp

Mut Length ≥

Displayed characteristics:

Nucleotide change +

3. Submit your Query

CBM1491-212A16 Tp 16
CBM1152-212B8 Tp 8
CBM1195-212B9 Tp 9
CBM1231-212B10 Tp 10
CBM1279-212B11 Tp 11
CBM1316-212B12 Tp 12
CBM1371-212B13 Tp 13
CBM1407-212B14 Tp 14
CBM1456-212B15 Tp 15
CBM1492-212B16 Tp 16
CBM418-212B1 Tp 1
CBM463-212B2 Tp 2
CBM510-212B3 Tp 3
CBM555-212B4 Tp 4
CBM592-212B5 Tp 5
CBM638-212B6 Tp 6
CBM686-212B7 Tp 7
CBM1493-212C16 Tp 16
CBM593-212C5 Tp 5
CBM639-212C6 Tp 6
CBM2180-212D16 Tp 16
CBM1380_212E7 Tp 7
CBM1465-212E8 Tp 8
CBM1721-212E12 Tp 12
CBM1805-212E13 Tp 13
CBM2181-212E16 Tp 16
CBM749-212E4 Tp 4
CBM2182-212F16 Tp 16
CBM1154-349G8 Tp 8
CBM1197-349G9 Tp 9
CBM1233-349G10 Tp 10
CBM1281-349G11 Tp 11
CBM1318-349G12 Tp 12
CBM1373-349G13 Tp 13
CBM1409-349G14 Tp 14
CBM1458-349G15 Tp 15
CBM1494-349G16 Tp 16
CBM420-349G1 Tp 1
CBM465-349G2 Tp 2
CBM512-349G3 Tp 3
CBM557-349G4 Tp 4
CBM594-349G5 Tp 5
CBM640-349G6 Tp 6
CBM688-349G7 Tp 7
CBM1495-349H16 Tp 16
CBM641-349H6 Tp 6
CBM689-349H7 Tp 7
CBM1496-349I16 Tp 16
CBM422-349I1 Tp 1
CBM467-349I2 Tp 2
CBM2183-349J16 Tp 16
CBM1125_349K4 Tp 4
CBM1207_349K5 Tp 5
CBM1291_349K6 Tp 6
CBM1383_349K7_v2 Tp 7
CBM1468-349K8 Tp 8
CBM1527_349K9 Tp 9
CBM1612_349K10 Tp 10
CBM1660_349K11 Tp 11
CBM1724_349K12 Tp 12
CBM1808_349K13 Tp 13
CBM2024_349K14 Tp 14
CBM2126_349K15 Tp 15
CBM2184-349K16 Tp 16
CBM475_349K1 Tp 1
CBM567_349K2 Tp 2
CBM650_349K3 Tp 3
CBM2185-349L16 Tp 16
CBM1157-356M8 Tp 8
CBM1236_356M10 Tp 10
CBM1321-356M12 Tp 12
CBM1412_356M14 Tp 14
CBM1497-356M16 Tp 16
CBM468_356M2 Tp 2
CBM560-356M4 Tp 4
CBM643_356M6 Tp 6
CBM1498-356N16 Tp 16
CBM2186-356P16 Tp 16
CBM2187-356R16 Tp 16
CBM1752-356S16 Tp 16
CBM130-356T16 Tp 16

CBM1491-212A16 Tp 16
CBM1152-212B8 Tp 8
CBM1195-212B9 Tp 9
CBM1231-212B10 Tp 10
CBM1279-212B11 Tp 11
CBM1316-212B12 Tp 12
CBM1371-212B13 Tp 13
CBM1407-212B14 Tp 14
CBM1456-212B15 Tp 15
CBM1492-212B16 Tp 16
CBM418-212B1 Tp 1
CBM463-212B2 Tp 2
CBM510-212B3 Tp 3
CBM555-212B4 Tp 4
CBM592-212B5 Tp 5
CBM638-212B6 Tp 6
CBM686-212B7 Tp 7
CBM1493-212C16 Tp 16
CBM593-212C5 Tp 5
CBM639-212C6 Tp 6
CBM2180-212D16 Tp 16
CBM1380_212E7 Tp 7
CBM1465-212E8 Tp 8
CBM1721-212E12 Tp 12
CBM1805-212E13 Tp 13
CBM2181-212E16 Tp 16
CBM749-212E4 Tp 4
CBM2182-212F16 Tp 16
CBM1154-349G8 Tp 8
CBM1197-349G9 Tp 9
CBM1233-349G10 Tp 10
CBM1281-349G11 Tp 11
CBM1318-349G12 Tp 12
CBM1373-349G13 Tp 13
CBM1409-349G14 Tp 14
CBM1458-349G15 Tp 15
CBM1494-349G16 Tp 16
CBM420-349G1 Tp 1
CBM465-349G2 Tp 2
CBM512-349G3 Tp 3
CBM557-349G4 Tp 4
CBM594-349G5 Tp 5
CBM640-349G6 Tp 6
CBM688-349G7 Tp 7
CBM1495-349H16 Tp 16
CBM641-349H6 Tp 6
CBM689-349H7 Tp 7
CBM1496-349I16 Tp 16
CBM422-349I1 Tp 1
CBM467-349I2 Tp 2
CBM2183-349J16 Tp 16
CBM1125_349K4 Tp 4
CBM1207_349K5 Tp 5
CBM1291_349K6 Tp 6
CBM1383_349K7_v2 Tp 7
CBM1468-349K8 Tp 8
CBM1527_349K9 Tp 9
CBM1612_349K10 Tp 10
CBM1660_349K11 Tp 11
CBM1724_349K12 Tp 12
CBM1808_349K13 Tp 13
CBM2024_349K14 Tp 14
CBM2126_349K15 Tp 15
CBM2184-349K16 Tp 16
CBM475_349K1 Tp 1
CBM567_349K2 Tp 2
CBM650_349K3 Tp 3
CBM2185-349L16 Tp 16
CBM1157-356M8 Tp 8
CBM1236_356M10 Tp 10
CBM1321-356M12 Tp 12
CBM1412_356M14 Tp 14
CBM1497-356M16 Tp 16
CBM468_356M2 Tp 2
CBM560-356M4 Tp 4
CBM643_356M6 Tp 6
CBM1498-356N16 Tp 16
CBM2186-356P16 Tp 16
CBM2187-356R16 Tp 16
CBM1752-356S16 Tp 16
CBM130-356T16 Tp 16

Mutation Type
Nuc. Change Effect
Codon Change
AA Change
AA Change Effect
Numerical Score
Fractional Score
Sequencing Technology
Read Type
Evidence