BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 6ed71c2f0df7e0ee7ee1f4f910d71351.SwissProt.fasta
20 sequences; 10,033 total letters
Query= ACIAD3638
Length=435
Score E
Sequences producing significant alignments: (Bits) Value
Q88RR3 Ribosomal RNA small subunit methyltransferase B [Pseudomon... 335 1e-114
Q9I7A9 Ribosomal RNA small subunit methyltransferase B [Pseudomon... 333 4e-114
Q88B41 Ribosomal RNA small subunit methyltransferase B [Pseudomon... 317 2e-107
B2VK95 Ribosomal RNA small subunit methyltransferase B [Erwinia t... 306 1e-103
Q2NQQ2 Ribosomal RNA small subunit methyltransferase B [Sodalis g... 304 7e-103
A8GKG7 Ribosomal RNA small subunit methyltransferase B [Serratia ... 300 3e-101
B4F1L5 Ribosomal RNA small subunit methyltransferase B [Proteus m... 297 4e-100
Q6D000 Ribosomal RNA small subunit methyltransferase B [Pectobact... 296 9e-100
A9R925 Ribosomal RNA small subunit methyltransferase B [Yersinia ... 296 1e-99
C6DFR7 Ribosomal RNA small subunit methyltransferase B [Pectobact... 296 1e-99
P36929 Ribosomal RNA small subunit methyltransferase B [Escherich... 283 8e-95
P45679 Probable ribosomal RNA small subunit methyltransferase B [... 267 2e-88
P94464 Probable ribosomal RNA small subunit methyltransferase B [... 180 5e-55
Q5SK01 Ribosomal RNA small subunit methyltransferase B [Thermus t... 102 6e-27
Q9TYV5 26S rRNA (cytosine-C(5))-methyltransferase nsun-1 [Caenorh... 89.0 6e-22
P46087 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase ... 88.6 9e-22
Q922K7 Probable 28S rRNA (cytosine-C(5))-methyltransferase [Mus m... 88.2 1e-21
O57712 tRNA (cytosine(72)-C(5))-methyltransferase [Pyrococcus hor... 85.9 2e-21
Q9FG73 25S rRNA (cytosine-C(5))-methyltransferase NOP2A [Arabidop... 85.5 8e-21
Q8VYM6 26S rRNA (cytosine-C(5))-methyltransferase NOP2B [Arabidop... 82.8 6e-20
>Q88RR3 Ribosomal RNA small subunit methyltransferase B [Pseudomonas
putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB
11950 / KT2440)]
Length=436
Score = 335 bits (858), Expect = 1e-114
Identities = 193/434 (44%), Positives = 250/434 (58%), Gaps = 12/434 (3%)
Query 11 LNLRAQVVATLLKVQQGQ-SLSGILHQQLNDIPERDRALFHELVLGTLRQWYALKSITLP 69
+N R L V G+ SL+ L QL+ + ERDR L +L GT R L +
Sbjct 1 MNPRLAAARALAAVLSGKASLNSSLPAQLDKVDERDRGLTQDLAFGTARWQPRLDLLAAQ 60
Query 70 LLTKPLN--NETVETCLYLGLYQVLCTRIPAHAAISETVTATKQLGFHALSGIVNAILRR 127
LL KP + V+ L +GLYQ+ TRIPAHAAI ETV +L G++NA+LRR
Sbjct 61 LLQKPFKAADADVQALLLVGLYQLFYTRIPAHAAIGETVGCADKLKKPWAKGLLNAVLRR 120
Query 128 ATRETESFKNSLQQ------AHGLPSWMYKRLKKDWPAQLNELCQQLKYSAPLTLRINQR 181
A RE E +++ AH P W+ K LK WP Q +C P+ LR+N+R
Sbjct 121 AQREGEELLAGMERDPVVRTAH--PRWLQKALKAFWPEQWEAICAANNAHPPMILRVNRR 178
Query 182 HIGRDAYLIKLEAQDIQARACHISEAGIVIEQSVQITQLPGFEQGWFSVQDEHAQLCATL 241
H RDAYL L I A AC S GIV+ ++ + LPGF +GW SVQDE AQL A L
Sbjct 179 HHSRDAYLALLAEAGIGASACQYSRDGIVLAEACDVRGLPGFAEGWVSVQDEAAQLSADL 238
Query 242 LPDLTDRVILDACAAPGGKTAHLLEKFTP-AHLIALDQDASRLVRVSENLKRLKLDQHHL 300
L + +LDAC APGGKT HLLE A+++A+D +A RL RV ENL RL+LD +
Sbjct 239 LELAPGQRVLDACCAPGGKTCHLLEAEAGLANMVAIDLEAKRLTRVRENLDRLQLDAELI 298
Query 301 EILAADATTWQSSQALDCIVLDAPCSATGVMRRHPDIRLLRQSTDIVQTVDLQKQILQHL 360
A D +W + I+LDAPCSATGV+RRHPDI++ RQ+ DI LQ ++L L
Sbjct 299 ACDARDTASWWDGKPFQRILLDAPCSATGVIRRHPDIKMTRQADDIPALATLQGELLDAL 358
Query 361 WTQLKVGGTLLYITCSILKIENEQQMIEFFAEHPDAKEIKIEADWGIEQIHGRQLLPVSG 420
W L+VGG LLY TCS L EN + + F A P A+E+ + + G+ Q HGRQLL G
Sbjct 359 WPTLEVGGMLLYATCSTLPTENTEVIKAFLARTPGARELDLATEAGLRQPHGRQLLAQEG 418
Query 421 QGDGFYYCRIEKVA 434
DGFYY ++ K+A
Sbjct 419 GHDGFYYAKLIKIA 432
>Q9I7A9 Ribosomal RNA small subunit methyltransferase B [Pseudomonas
aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116
/ JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=434
Score = 333 bits (854), Expect = 4e-114
Identities = 194/435 (45%), Positives = 253/435 (58%), Gaps = 14/435 (3%)
Query 11 LNLRAQVVATLLKVQQGQ-SLSGILHQQLNDIPERDRALFHELVLGTLRQWYALKSITLP 69
+N R L V G+ SLSG L QL+ + RDR L EL G R L+++
Sbjct 1 MNPRLAACQALAAVLAGRASLSGALPPQLDKVAPRDRGLTQELAFGAARWQPRLQALAAR 60
Query 70 LLTKPLN--NETVETCLYLGLYQVLCTRIPAHAAISETVTATKQLGFHALSGIVNAILRR 127
LL KP + + L +GLYQ+L TRIP HAAI ETV +L G++NA+LRR
Sbjct 61 LLQKPFKAADTDIHALLLIGLYQLLYTRIPPHAAIGETVGCADKLKKGWAKGVLNAVLRR 120
Query 128 ATRETESFKNSLQQAH----GLPSWMYKRLKKDWPAQLNELCQQLKYSAPLTLRINQRHI 183
A RE E+ + + G P W+ K LK+ WP QL+ LC P+TLR+N+RH
Sbjct 121 AQREGETLLAEVDRDPSARLGHPRWLLKALKQAWPEQLDALCAANNAHPPMTLRVNRRHG 180
Query 184 GRDAYLIKLEAQDIQARACHISEAGIVIEQSVQITQLPGFEQGWFSVQDEHAQLCATLLP 243
RDAYL +L I+ARAC S GI + + +LPGF +G SVQDE AQL A L
Sbjct 181 ERDAYLAELAEAGIKARACDYSRDGIQLAAPRDVRELPGFAEGRVSVQDEAAQLAAEQLE 240
Query 244 DLTDRVILDACAAPGGKTAHLLEKFTP-AHLIALDQDASRLVRVSENLKRLKLDQHHLEI 302
+ +LDAC APGGKT HLLE A ++A+D + SRLVRV ENL+RL L +
Sbjct 241 SAPGQRVLDACCAPGGKTCHLLETQPELAEVVAVDLEESRLVRVRENLQRLGLQA---SL 297
Query 303 LAADATT---WQSSQALDCIVLDAPCSATGVMRRHPDIRLLRQSTDIVQTVDLQKQILQH 359
+AADA W + I+LDAPCSATGV+RRHPDI+L R+ DI LQ ++L
Sbjct 298 VAADARATGEWWDGKPFQRILLDAPCSATGVIRRHPDIKLARKPEDIAALAHLQGELLDA 357
Query 360 LWTQLKVGGTLLYITCSILKIENEQQMIEFFAEHPDAKEIKIEADWGIEQIHGRQLLPVS 419
LW L+VGG LLY TCS++ EN + F A P A+E+ + WG++Q HGRQLLP
Sbjct 358 LWPTLEVGGVLLYATCSVMPAENSDSIAAFLARTPGARELDLPGPWGMKQPHGRQLLPQV 417
Query 420 GQGDGFYYCRIEKVA 434
DGFYY ++ K++
Sbjct 418 EGHDGFYYAKLIKIS 432
>Q88B41 Ribosomal RNA small subunit methyltransferase B [Pseudomonas
syringae pv. tomato (strain ATCC BAA-871 / DC3000)]
Length=448
Score = 317 bits (811), Expect = 2e-107
Identities = 193/442 (44%), Positives = 252/442 (57%), Gaps = 23/442 (5%)
Query 11 LNLRAQVVATLLKVQQGQ-SLSGILHQQLNDIPERDRALFHELVLGTLRQWYALKSITLP 69
+N R L V G+ SL+ L QL+ + RDR L +L GT R L ++
Sbjct 1 MNPRLAAAKALAAVLSGKASLNSSLPTQLDKVELRDRGLTQDLAFGTARWQPRLSALAAK 60
Query 70 LLTKPLN--NETVETCLYLGLYQVLCTRIPAHAAISETVTATKQLGFHALSGIVNAILRR 127
LL KP + VE L +GLYQ+ +RIPAHAAI ETV +L G++NA+LR
Sbjct 61 LLQKPFKAADADVEALLLVGLYQLFYSRIPAHAAIGETVGCADKLKKPWAKGLLNAVLRN 120
Query 128 ATRETESFKNSLQQ------AHGLPSWMYKRLKKDWPAQLNELCQQLKYSAPLTLRINQR 181
A R+ E+ L+ AH P W+ K LK WP Q +C P+ LR+N+R
Sbjct 121 AQRDGEALLIELEHDPVVRTAH--PRWLQKALKAAWPEQWEAICAANNAHPPMILRVNRR 178
Query 182 HIGRDAYLIKLEAQDIQARACHISEAGIVIEQSVQITQLPGFEQGWFSVQDEHAQLCATL 241
H RD YL L+ ++A AC S+ GIV+ + + LPGF +GW SVQDE AQL A L
Sbjct 179 HQRRDQYLELLKTAGLEASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQDEAAQLAADL 238
Query 242 LPDLTDRVILDACAAPGGKTAHLLE-KFTPAHLIALDQDASRLVRVSENLKRLKLDQHHL 300
L + +LDAC APGGKT HLLE + + ++A+D +A RLVRV ENL+RL LD
Sbjct 239 LELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLERLGLD---A 295
Query 301 EILAADA---TTWQSSQALDCIVLDAPCSATGVMRRHPDIRLLRQSTDIVQTVDLQKQIL 357
E++AADA W + I+LDAPCSATGV+RRHPDI+L RQ DI LQ ++L
Sbjct 296 ELIAADARETAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQLDDIAALATLQGELL 355
Query 358 QHLWTQLKVGGTLLYITCSILKIENEQQMIEFFAEHPDAKEIKI-----EADWGIEQIHG 412
LW L+VGG L+Y TCS L EN + F A A+E+ I + GI+Q HG
Sbjct 356 DALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSGARELDIAGQAGQPPAGIKQPHG 415
Query 413 RQLLPVSGQGDGFYYCRIEKVA 434
RQLL G DGFYY ++ K+A
Sbjct 416 RQLLAQQGGHDGFYYAKLIKIA 437
>B2VK95 Ribosomal RNA small subunit methyltransferase B [Erwinia
tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 /
NCPPB 4357 / Et1/99)]
Length=429
Score = 306 bits (784), Expect = 1e-103
Identities = 180/430 (42%), Positives = 244/430 (57%), Gaps = 16/430 (4%)
Query 12 NLRAQVVATLLKV-QQGQSLSGILHQQLNDIPERDRALFHELVLGTLRQWYALKSITLPL 70
NLR T+ KV +QGQSLS +L + ++D AL EL G LR L+ + L
Sbjct 6 NLRCIAAQTIEKVVEQGQSLSNVLPAAQKSVGDKDAALLQELCYGVLRTLPQLEWVIGRL 65
Query 71 LTKPLNNE--TVETCLYLGLYQVLCTRIPAHAAISETVTATKQLGFHALSGIVNAILRRA 128
+++P+ + V + +GLYQ++ TRIPAHAA++ETV L L G++N +LR+
Sbjct 66 MSRPMTGKQRAVHFLIMVGLYQLMFTRIPAHAALAETVEGAVALKRPQLKGLINGVLRQF 125
Query 129 TRETESFKNSLQ---QAHGLPSWMYKRLKKDWPAQLNELCQQLKYSAPLTLRINQRHIGR 185
R+ + + Q + P W+ +RLK+ WPAQ ++ P+ LR+N++H R
Sbjct 126 QRQQDELMQQMNDGDQQYLHPKWLLERLKRAWPAQWKQIVDANNQRPPMWLRVNRQHHSR 185
Query 186 DAYLIKLEAQDIQARACHISEAGIVIEQSVQITQLPGFEQGWFSVQDEHAQLCATLLPDL 245
DA+L LE QA A + +E + QLPGF+QGW +VQD AQ C LL
Sbjct 186 DAWLTLLEESGKQAFAHPQHGDALRLESPCAVGQLPGFDQGWITVQDVSAQGCVALLAPR 245
Query 246 TDRVILDACAAPGGKTAHLLEKFTPAHLIALDQDASRLVRVSENLKRLKLDQHHLEILAA 305
ILD CAAPGGKT H+LE A ++A+D DA RL RVSENL+RL + E+
Sbjct 246 DGEQILDLCAAPGGKTTHILEAAPQAKVMAVDVDAQRLARVSENLQRLTMQA---EVKQG 302
Query 306 DATT---WQSSQALDCIVLDAPCSATGVMRRHPDIRLLRQSTDIVQTVDLQKQILQHLWT 362
D T W D I+LDAPCSATGV+RRHPDI+ LR+ DI + LQ+QIL +W
Sbjct 303 DGRTPAAWCGDTQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQQQILDAVWP 362
Query 363 QLKVGGTLLYITCSILKIENEQQMIEFFAEHPDAKEIKIEADWGIEQIHGRQLLPVSGQG 422
LK GGTLLY TCS+L EN Q+ +F H DA I + G G Q+ P + G
Sbjct 363 HLKPGGTLLYATCSVLPEENHVQIGQFLQRHADATLI----ETGDLTQPGIQVFPQADGG 418
Query 423 DGFYYCRIEK 432
DGFYY ++ K
Sbjct 419 DGFYYAKLVK 428
>Q2NQQ2 Ribosomal RNA small subunit methyltransferase B [Sodalis
glossinidius (strain morsitans)]
Length=433
Score = 304 bits (779), Expect = 7e-103
Identities = 182/435 (42%), Positives = 244/435 (56%), Gaps = 20/435 (5%)
Query 9 TELNLR---AQVVATLLKVQQGQSLSGILHQQLNDIPERDRALFHELVLGTLRQWYALKS 65
T NLR A+ VA +L QGQSL +L + E+DRAL EL G +R L+
Sbjct 3 THYNLRVIAARAVAQVL--DQGQSLGALLPPLQAPLSEKDRALLQELCFGIMRVLPQLEW 60
Query 66 ITLPLLTKPLNNET--VETCLYLGLYQVLCTRIPAHAAISETVTATKQLGFHALSGIVNA 123
+ L+ KPL + V L +GLYQ+ TRIP HAA++ETV + G++N
Sbjct 61 LLRQLMAKPLTGKQRPVHYLLMVGLYQLTYTRIPPHAALAETVEGAVAMKRPQFKGLING 120
Query 124 ILRRATRETESFKNSLQQA---HGLPSWMYKRLKKDWPAQLNELCQQLKYSAPLTLRINQ 180
+LR+ R+ + ++ H PSW+ KR+ WPAQ ++ P+ LR+N+
Sbjct 121 VLRQFQRQQPALLADAERQDIRHLHPSWLQKRILAAWPAQYAQIIDANNQRPPMWLRVNR 180
Query 181 RHIGRDAYLIKLEAQDIQARACHISEAGIVIEQSVQITQLPGFEQGWFSVQDEHAQLCAT 240
H RDAYL L DI A A I +E + +LPGF++GW +VQD AQ CA
Sbjct 181 LHHSRDAYLALLAGTDIAAVAHSQLPDAIRLEMPCNVGRLPGFDRGWVTVQDASAQGCAL 240
Query 241 LLPDLTDRVILDACAAPGGKTAHLLEKFTPAHLIALDQDASRLVRVSENLKRLKLDQHHL 300
LL ILD CAAPGGKT H+LE A ++A+D D R R+ +NL+RL +
Sbjct 241 LLAPQNSETILDLCAAPGGKTTHILEIAPAARVMAVDVDGQRAARIHDNLQRLGM---QA 297
Query 301 EILAADATT---WQSSQALDCIVLDAPCSATGVMRRHPDIRLLRQSTDIVQTVDLQKQIL 357
E++ D T W+S D I+LDAPCSATGV+RRHPDI+ LR+ DI + +LQ+QIL
Sbjct 298 EVVIGDGRTPDAWRSGMLFDRILLDAPCSATGVIRRHPDIKWLRRDGDIAELAELQRQIL 357
Query 358 QHLWTQLKVGGTLLYITCSILKIENEQQMIEFFAEHPDAKEIKIEADWGIEQIHGRQLLP 417
W LK+GGTLLY TCSIL EN Q+ F A+HPDA + + G G Q LP
Sbjct 358 CAAWRVLKLGGTLLYATCSILPEENRGQIAAFLADHPDA----LLQETGDAAAPGLQCLP 413
Query 418 VSGQGDGFYYCRIEK 432
V GDGF+Y ++ K
Sbjct 414 VPTSGDGFFYAKMIK 428
>A8GKG7 Ribosomal RNA small subunit methyltransferase B [Serratia
proteamaculans (strain 568)]
Length=429
Score = 300 bits (768), Expect = 3e-101
Identities = 177/433 (41%), Positives = 244/433 (56%), Gaps = 20/433 (5%)
Query 12 NLRAQVVATLLKV-QQGQSLSGILHQQLNDIPERDRALFHELVLGTLRQWYALKSITLPL 70
NLR+ + +V QGQSLS +L I ++DRAL EL GTLR L+ L
Sbjct 6 NLRSIAAIAIGQVLDQGQSLSTVLPSLQKTISDKDRALLQELCFGTLRVLPQLEWCIQQL 65
Query 71 LTKPLNNE--TVETCLYLGLYQVLCTRIPAHAAISETVTATKQLGFHALSGIVNAILRRA 128
+ KP+ + T+ L +GLYQ+L TRIPAHA ++ETV L L G++N +LR+
Sbjct 66 MAKPMTGKQRTLHYLLMVGLYQLLYTRIPAHAVLAETVEGAVALKRPQLKGLINGVLRQF 125
Query 129 TRETESF-----KNSLQQAHGLPSWMYKRLKKDWPAQLNELCQQLKYSAPLTLRINQRHI 183
R+ E N + H PSW+ KR+++ +PAQ ++ P+ LR+N+ H
Sbjct 126 QRQQEELLQRAANNDSRYLH--PSWLLKRIQQAYPAQWEQIIDANNQKPPMWLRVNRLHH 183
Query 184 GRDAYLIKLEAQDIQARACHISEAGIVIEQSVQITQLPGFEQGWFSVQDEHAQLCATLLP 243
R+ YL +E I A + + +T LPGF GW +VQD AQ C LL
Sbjct 184 TREDYLQLMEQAGIAAEPHAEYRDAVRLLAPCAVTDLPGFADGWVTVQDASAQGCVDLLD 243
Query 244 DLTDRVILDACAAPGGKTAHLLEKFTPAHLIALDQDASRLVRVSENLKRLKLDQHHLEIL 303
ILD CAAPGGKT H+LE AH++A+D D RL RV ENL+RL+L H E+
Sbjct 244 PQDGEQILDLCAAPGGKTTHILEAAPKAHVMAVDIDEQRLKRVKENLQRLRL---HAEVK 300
Query 304 AADATT---WQSSQALDCIVLDAPCSATGVMRRHPDIRLLRQSTDIVQTVDLQKQILQHL 360
D T W + D I+LDAPCSATGV+RRHPDI+ LR+ +DI + LQ +I++ +
Sbjct 301 QGDGRTPQQWCGDKQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAALQAEIIEAI 360
Query 361 WTQLKVGGTLLYITCSILKIENEQQMIEFFAEHPDAKEIKIEADWGIEQIHGRQLLPVSG 420
W LK GG ++Y TCSIL EN +Q+ F H DA+ + + G +Q GRQ LP
Sbjct 361 WPHLKSGGVMVYATCSILPAENAEQVSAFLQRHADARLV----ETGNQQQPGRQNLPHPE 416
Query 421 QGDGFYYCRIEKV 433
GDGF+Y ++ K+
Sbjct 417 DGDGFFYAKLIKM 429
>B4F1L5 Ribosomal RNA small subunit methyltransferase B [Proteus
mirabilis (strain HI4320)]
Length=422
Score = 297 bits (760), Expect = 4e-100
Identities = 178/434 (41%), Positives = 243/434 (56%), Gaps = 25/434 (6%)
Query 9 TELNLRAQVVATLLKV-QQGQSLSGILHQQLNDIPERDRALFHELVLGTLRQWYALKSIT 67
T NLR+ + +V QG SLS ++ + +I ++D+AL EL GTLR L+ I
Sbjct 3 TSYNLRSIAAKAIAQVLDQGLSLSSVIPELQKNISDKDKALLQELCFGTLRTLPQLEWII 62
Query 68 LPLLTKPLNNET--VETCLYLGLYQVLCTRIPAHAAISETVTATKQLGFHALSGIVNAIL 125
L+ KPL + + + +GLYQ+L TR+PAHAA++ETV L L G++N +L
Sbjct 63 QQLMDKPLKGKQRILHYLIMVGLYQLLYTRVPAHAALAETVNGAIALKKPQLKGLINGVL 122
Query 126 RRATRET----ESFKNSLQQAHGLPSWMYKRLKKDWPAQLNELCQQLKYSAPLTLRINQR 181
R+ R+ E F+N+ + PSW+ R+K +P + + P+ LR+NQ
Sbjct 123 RQFQRQQDVLMERFQNN-DSRYLHPSWLLTRIKNAYPELWESIIEGNNQKPPMWLRVNQI 181
Query 182 HIGRDAYLIKLEAQDIQARACHISEAGIVIEQSVQITQLPGFEQGWFSVQDEHAQLCATL 241
H R+ YL LE + I A + I +E + LPGF +GW +VQD AQ CA L
Sbjct 182 HHSREQYLALLEKEGISAFSDDHHPNAIRLETPCNVHLLPGFNEGWVTVQDRSAQRCAEL 241
Query 242 LPDLTDRVILDACAAPGGKTAHLLEKFTPAHLIALDQDASRLVRVSENLKRLKLDQHHLE 301
L + ILD CAAPGGKT H+LE AH++A+D D RL RV ENL RLKL H
Sbjct 242 LAPQNNEQILDLCAAPGGKTTHILEIAPKAHVLAIDIDEQRLARVKENLNRLKL---HAT 298
Query 302 ILAADA---TTWQSSQALDCIVLDAPCSATGVMRRHPDIRLLRQSTDIVQTVDLQKQILQ 358
+ + D W ++ D I+LDAPCSATGV+RRHPDI+ LR++ DI Q +QK+IL
Sbjct 299 VKSGDGRYPEQWCANMQFDRILLDAPCSATGVIRRHPDIKWLRRNEDIAQLAQIQKEILH 358
Query 359 HLWTQLKVGGTLLYITCSILKIENEQQMIEFFAEHPDAKEIKIEADWGIEQIHGRQLLPV 418
+W LK GGTL+Y TCSIL EN QQ+ F + DA + D + Q LP
Sbjct 359 AIWPYLKSGGTLVYATCSILPEENSQQIAAFLSSMQDA-----QCD------YQHQCLPE 407
Query 419 SGQGDGFYYCRIEK 432
GDGF+Y I K
Sbjct 408 QYSGDGFFYALINK 421
>Q6D000 Ribosomal RNA small subunit methyltransferase B [Pectobacterium
atrosepticum (strain SCRI 1043 / ATCC BAA-672)]
Length=429
Score = 296 bits (758), Expect = 9e-100
Identities = 175/429 (41%), Positives = 245/429 (57%), Gaps = 17/429 (4%)
Query 12 NLRAQVVATLLKVQQGQSLSGILHQQLNDIPERDRALFHELVLGTLRQWYALKSITLPLL 71
++ A+VV +L QGQSLS +L D+ ++DRAL EL G LR L+ L+
Sbjct 9 SIAAKVVGQVL--DQGQSLSALLPIHQRDVSDKDRALLQELCFGVLRVLPQLEWCIQQLM 66
Query 72 TKPLNNE--TVETCLYLGLYQVLCTRIPAHAAISETVTATKQLGFHALSGIVNAILRRAT 129
KPL + T+ + +G+YQ+ TRIP HAA++ETV L L G++N +LR+
Sbjct 67 AKPLTGKQRTLHYLIMVGIYQLHYTRIPPHAALAETVEGAVALKRPQLKGLINGVLRQFQ 126
Query 130 RETESF--KNSLQQAHGL-PSWMYKRLKKDWPAQLNELCQQLKYSAPLTLRINQRHIGRD 186
R+ E + + +H L PSW+ R++ +P + + P+ LR+N+ H R+
Sbjct 127 RQQEELLQREATHSSHYLHPSWLLARIEHAYPNNWRGIVEANNQRPPMWLRVNRLHHTRE 186
Query 187 AYLIKLEAQDIQARACHISEAGIVIEQSVQITQLPGFEQGWFSVQDEHAQLCATLLPDLT 246
AYL L I+A I + + QLPGF QGW +VQD AQ C L
Sbjct 187 AYLNLLMQGGIEAFPHTEYSDAIRLASPCAVDQLPGFSQGWATVQDASAQGCVYWLDPQD 246
Query 247 DRVILDACAAPGGKTAHLLEKFTPAHLIALDQDASRLVRVSENLKRLKLDQHHLEILAAD 306
ILD CAAPGGKT H+LE +H++A+D D +RL RV ENL RL++ H E+ D
Sbjct 247 GEQILDLCAAPGGKTTHILEAAPKSHVLAVDVDETRLGRVKENLLRLQM---HAEVKQGD 303
Query 307 AT---TWQSSQALDCIVLDAPCSATGVMRRHPDIRLLRQSTDIVQTVDLQKQILQHLWTQ 363
+W ++ D I+LDAPCSATGV+RRHPDI+ LR+ DI + V LQK+IL +W
Sbjct 304 GRYPDSWCEARVFDRILLDAPCSATGVIRRHPDIKWLRRDRDIEELVALQKEILDAIWPH 363
Query 364 LKVGGTLLYITCSILKIENEQQMIEFFAEHPDAKEIKIEADWGIEQIHGRQLLPVSGQGD 423
LK GGT++Y TCSIL EN QQ+ F + H DA + D G +I G Q+LP + GD
Sbjct 364 LKTGGTMVYATCSILPQENTQQVTGFLSRHADAALV----DTGTSEIPGIQILPHADSGD 419
Query 424 GFYYCRIEK 432
GF+Y ++ K
Sbjct 420 GFFYAKLVK 428
>A9R925 Ribosomal RNA small subunit methyltransferase B [Yersinia
pestis bv. Antiqua (strain Angola)]
Length=429
Score = 296 bits (757), Expect = 1e-99
Identities = 173/429 (40%), Positives = 237/429 (55%), Gaps = 14/429 (3%)
Query 12 NLRAQVVATLLKV-QQGQSLSGILHQQLNDIPERDRALFHELVLGTLRQWYALKSITLPL 70
NLR+ + +V QGQSLS +L + +I ++DRAL EL GTLR L+ L
Sbjct 6 NLRSIAAKAISQVLDQGQSLSAVLPELQKNISDKDRALLQELCFGTLRVLPQLEWCIQQL 65
Query 71 LTKPLNNE--TVETCLYLGLYQVLCTRIPAHAAISETVTATKQLGFHALSGIVNAILRRA 128
+ +P+ + + +GLYQ++ TRIP HAA++ETV L L G++N +LR+
Sbjct 66 MARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATVLKRPQLKGLINGVLRQF 125
Query 129 TRET-----ESFKNSLQQAHGLPSWMYKRLKKDWPAQLNELCQQLKYSAPLTLRINQRHI 183
R+ + N H PSW+ R+K+ +PAQ ++ P+ LR+N++H
Sbjct 126 QRQQVELLERAVNNDSHYLH--PSWLLARIKQAYPAQWQQILDANNQRPPMWLRVNRQHH 183
Query 184 GRDAYLIKLEAQDIQARACHISEAGIVIEQSVQITQLPGFEQGWFSVQDEHAQLCATLLP 243
R YL L DI A I + + + LPGFE GW +VQD AQ C LL
Sbjct 184 SRSEYLELLTQADINAEPHPIYRDAVRLITPCAVNHLPGFELGWVTVQDASAQGCVDLLD 243
Query 244 DLTDRVILDACAAPGGKTAHLLEKFTPAHLIALDQDASRLVRVSENLKRLKLDQHHLEIL 303
ILD CAAPGGKT H+LE AH++A+D D RL RV ENL+RL+L
Sbjct 244 PQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRVGD 303
Query 304 AADATTWQSSQALDCIVLDAPCSATGVMRRHPDIRLLRQSTDIVQTVDLQKQILQHLWTQ 363
TW Q D I+LDAPCSATGV+RRHPDI+ LR+ DI + LQ +I++ +W +
Sbjct 304 GRAPDTWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPK 363
Query 364 LKVGGTLLYITCSILKIENEQQMIEFFAEHPDAKEIKIEADWGIEQIHGRQLLPVSGQGD 423
LK GG L+Y TCSIL EN+QQ+ F HP+A+ + G G+Q LP GD
Sbjct 364 LKHGGVLVYATCSILPEENQQQIAAFLQRHPEAQ----LTETGTTAAPGKQNLPHPEDGD 419
Query 424 GFYYCRIEK 432
GF+Y +I K
Sbjct 420 GFFYAKIIK 428
>C6DFR7 Ribosomal RNA small subunit methyltransferase B [Pectobacterium
carotovorum subsp. carotovorum (strain PC1)]
Length=429
Score = 296 bits (757), Expect = 1e-99
Identities = 174/429 (41%), Positives = 245/429 (57%), Gaps = 17/429 (4%)
Query 12 NLRAQVVATLLKVQQGQSLSGILHQQLNDIPERDRALFHELVLGTLRQWYALKSITLPLL 71
++ A+VV +L QGQSLS +L ++ E+DRAL EL G LR L+ L+
Sbjct 9 SIAAKVVGQVL--DQGQSLSALLPVHQREVSEKDRALLQELCFGVLRVLPQLEWCIQQLM 66
Query 72 TKPLNNE--TVETCLYLGLYQVLCTRIPAHAAISETVTATKQLGFHALSGIVNAILRRAT 129
KPL + T+ + +G+YQ+ TRIP HAA++ETV L L G++N +LR+
Sbjct 67 AKPLTGKQRTLHYLIMVGIYQLHYTRIPPHAALAETVEGAVALKRPQLKGLINGVLRQFQ 126
Query 130 RETESF--KNSLQQAHGL-PSWMYKRLKKDWPAQLNELCQQLKYSAPLTLRINQRHIGRD 186
R+ E + + +H L PSW+ R++ +P + + P+ LR+N+ H R+
Sbjct 127 RQQEELIQREANHSSHYLHPSWLLARIEHAYPNHWQTIVEANNQRPPMWLRVNRLHHTRE 186
Query 187 AYLIKLEAQDIQARACHISEAGIVIEQSVQITQLPGFEQGWFSVQDEHAQLCATLLPDLT 246
AYL L + I+A I + + QLPGF QGW +VQD AQ C L
Sbjct 187 AYLNLLAQEGIEAFPHTEFTDAIRLASPCAVDQLPGFSQGWATVQDASAQGCVYWLDPQD 246
Query 247 DRVILDACAAPGGKTAHLLEKFTPAHLIALDQDASRLVRVSENLKRLKLDQHHLEILAAD 306
ILD CAAPGGKT H+LE +H++A+D D +RL RV ENL RL++ H E+ D
Sbjct 247 GEQILDLCAAPGGKTTHILEAAPQSHVLAVDIDETRLGRVKENLLRLQM---HAEVKQGD 303
Query 307 AT---TWQSSQALDCIVLDAPCSATGVMRRHPDIRLLRQSTDIVQTVDLQKQILQHLWTQ 363
+W + D I+LDAPCSATGV+RRHPDI+ LR+ DI + V LQK+I +W
Sbjct 304 GRYPDSWCEGRMFDRILLDAPCSATGVIRRHPDIKWLRRDRDIEELVALQKEIFDAIWPH 363
Query 364 LKVGGTLLYITCSILKIENEQQMIEFFAEHPDAKEIKIEADWGIEQIHGRQLLPVSGQGD 423
LKVGGT++Y TCSIL EN QQ+ +F H DA + D G ++ G Q+LP + GD
Sbjct 364 LKVGGTMVYATCSILPQENAQQVTDFLTRHADATLV----DTGTRELPGIQMLPHADGGD 419
Query 424 GFYYCRIEK 432
GF+Y ++ K
Sbjct 420 GFFYAKLVK 428
>P36929 Ribosomal RNA small subunit methyltransferase B [Escherichia
coli (strain K12)]
Length=429
Score = 283 bits (725), Expect = 8e-95
Identities = 167/427 (39%), Positives = 236/427 (55%), Gaps = 10/427 (2%)
Query 12 NLRAQVVATLLKV-QQGQSLSGILHQQLNDIPERDRALFHELVLGTLRQWYALKSITLPL 70
NLR+ + +V +QGQSLS IL + ++D+AL EL G LR L + L
Sbjct 6 NLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLINKL 65
Query 71 LTKPLNNE--TVETCLYLGLYQVLCTRIPAHAAISETVTATKQLGFHALSGIVNAILRRA 128
+ +P+ + TV + +GLYQ+L TRIP HAA++ETV + L G++N +LR+
Sbjct 66 MARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQLKGLINGVLRQF 125
Query 129 TRETESFK---NSLQQAHGLPSWMYKRLKKDWPAQLNELCQQLKYSAPLTLRINQRHIGR 185
R+ E N+ + PSW+ KRL+K +P Q + + P+ LRIN+ H R
Sbjct 126 QRQQEELLAEFNASDARYLHPSWLLKRLQKAYPEQWQSIVEANNQRPPMWLRINRTHHSR 185
Query 186 DAYLIKLEAQDIQARACHISEAGIVIEQSVQITQLPGFEQGWFSVQDEHAQLCATLLPDL 245
D++L L+ ++ + +E + LPGFE GW +VQD AQ C T L
Sbjct 186 DSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQ 245
Query 246 TDRVILDACAAPGGKTAHLLEKFTPAHLIALDQDASRLVRVSENLKRLKLDQHHLEILAA 305
ILD CAAPGGKT H+LE A ++A+D D RL RV +NLKRL + +
Sbjct 246 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGR 305
Query 306 DATTWQSSQALDCIVLDAPCSATGVMRRHPDIRLLRQSTDIVQTVDLQKQILQHLWTQLK 365
+ W Q D I+LDAPCSATGV+RRHPDI+ LR+ DI + LQ +IL +W LK
Sbjct 306 YPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLK 365
Query 366 VGGTLLYITCSILKIENEQQMIEFFAEHPDAKEIKIEADWGIEQIHGRQLLPVSGQGDGF 425
GGTL+Y TCS+L EN Q+ F DA+ + G + G+Q LP + +GDGF
Sbjct 366 TGGTLVYATCSVLPEENSLQIKAFLQRTADAE----LCETGTPEQPGKQNLPGAEEGDGF 421
Query 426 YYCRIEK 432
+Y ++ K
Sbjct 422 FYAKLIK 428
>P45679 Probable ribosomal RNA small subunit methyltransferase
B [Coxiella burnetii (strain RSA 493 / Nine Mile phase I)]
Length=430
Score = 267 bits (682), Expect = 2e-88
Identities = 164/433 (38%), Positives = 237/433 (55%), Gaps = 16/433 (4%)
Query 11 LNLRAQVVATLLKVQQGQ-SLSGILHQQLNDIPERDRALFHELVLGTLRQWYALKSITLP 69
+N RA + +V Q + SL+ +L +++++L EL GTLR ++ LK I
Sbjct 1 MNTRATTAILVNQVVQKKCSLTALLSAN-----KKNQSLIQELCYGTLRWYFKLKLIAEK 55
Query 70 LLTKPLNNETVET-CLYL-GLYQVLCTRIPAHAAISETVTATKQLGFHALSGIVNAILRR 127
LL PL ++ + CL L G YQ+ IP H +++TV A + L G++N +LRR
Sbjct 56 LLHAPLRDKDHDIFCLILTGFYQLNYLNIPTHTIVNQTVGAAEILKKPWAKGLINKLLRR 115
Query 128 ATRETESF----KNSLQQAHGLPSWMYKRLKKDWPAQLNELCQQLKYSAPLTLRINQRHI 183
E + + +++ + P W + +KK WP + P+TLR+N I
Sbjct 116 FIAEKDELLTFTEKTIEGQYAHPLWFIQHIKKAWPDHWESILIANNARPPMTLRVNLTKI 175
Query 184 GRDAYLIKLEAQDIQARACHISEAGIVIEQSVQITQLPGFEQGWFSVQDEHAQLCATLLP 243
R+ YL L+ ++I A+ A I +E+ + QLPGF +G+ +QD Q A LL
Sbjct 176 SREIYLEMLDQKNISAKPLDFLPAAIQLEKPCSVHQLPGFNEGYCYIQDAAGQFAAYLLK 235
Query 244 DLTDRVILDACAAPGGKTAHLLEKFTPAH-LIALDQDASRLVRVSENLKRLKLDQHHLEI 302
++ +LDACAAPG KT+H+LE L+A+D + RL R+ EN+ RL L Q HL+
Sbjct 236 LENNQTVLDACAAPGSKTSHILEVNPHLKTLVAIDNNKQRLNRIKENITRLGLRQEHLQC 295
Query 303 LAADATT---WQSSQALDCIVLDAPCSATGVMRRHPDIRLLRQSTDIVQTVDLQKQILQH 359
L AD + W S + D I+LDAPCSATGV+RRHPDI+LLRQ DI Q + Q+L
Sbjct 296 LLADVSQIDQWSSGELFDRILLDAPCSATGVIRRHPDIKLLRQPGDISQYHQKKLQLLNA 355
Query 360 LWTQLKVGGTLLYITCSILKIENEQQMIEFFAEHPDAKEIKIEADWGIEQIHGRQLLPVS 419
LWT LK GG LLY TCS+L ENE+ + EF + H + G++ +G Q LP
Sbjct 356 LWTVLKAGGFLLYSTCSVLPDENEKVIEEFLSTHDKVELSPTNVHGGLQLKYGVQQLPGQ 415
Query 420 GQGDGFYYCRIEK 432
DGFYY + K
Sbjct 416 DNKDGFYYSLLFK 428
>P94464 Probable ribosomal RNA small subunit methyltransferase
B [Bacillus subtilis (strain 168)]
Length=447
Score = 180 bits (457), Expect = 5e-55
Identities = 139/448 (31%), Positives = 219/448 (49%), Gaps = 34/448 (8%)
Query 12 NLRAQVVATLLKVQQGQSLSGILHQQL---NDIPERDRALFHELVLGTLRQWYALKSITL 68
++R + L+K++Q Q+ S +L + + N++ +++R L ELV GTL+ AL +
Sbjct 5 SVRDIALEALIKLEQNQAYSNLLLKSVIKSNELSDQNRGLLTELVYGTLQNKIALDYMLK 64
Query 69 PLLTKPLNNET-VETCLYLGLYQV-LCTRIPAHAAISETVTATKQLGFHALSGIVNAILR 126
P + KP + V L L LYQ+ +IP AAI E V K G ++ VN +LR
Sbjct 65 PFINKPQKVKPWVIQLLRLSLYQMEYLEKIPDRAAIHEAVEIAKIRGHKGIASFVNGVLR 124
Query 127 RATRE-------TESFKNSLQQAHGLPSWMYKRLKKDWPAQLNE-LCQQLKYSAPLTLRI 178
RE E L P W+ K + + E +C+ TLR+
Sbjct 125 SIQREGVPSFDAIEDPVRRLATETSHPEWLVKEWADAYGFEAAEKICRIHLIPPKQTLRV 184
Query 179 NQRHIGRDAYLIKLEAQDIQARACHISEAGIVIEQSVQITQLPGFEQGWFSVQDEHAQLC 238
NQ R L ++ A+ I+ ++E + + + I F+ G S+QDE + L
Sbjct 185 NQMKADRAELLDQMAAEGIEVEKGDLAEDAVKLLKGT-IAGTHFFQNGEVSIQDESSMLV 243
Query 239 ATLLPDLTDRVILDACAAPGGKTAHLLEKF-TPAHLIALDQDASRLVRVSENLKRLKLDQ 297
A L +D +LDACAAPGGK+AH+ E + +LD ++ + E RL L
Sbjct 244 ARALDPKSDETVLDACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVKLIKEAADRLGLTI 303
Query 298 HHLEILAADAT--TWQSSQALDCIVLDAPCSATGVMRRHPDIRLLRQSTDIVQTVDLQKQ 355
H E + A T+++ Q D I++DAPCS GV+RR PD++ ++ D + ++Q
Sbjct 304 IHAETMDARKAGETFENEQ-FDRILVDAPCSGFGVIRRKPDMKYTKKPDDSARLAEIQLS 362
Query 356 ILQHLWTQLKVGGTLLYITCSILKIENEQQMIEFFAEHPDAKEIKIEADWGIEQ------ 409
IL+ + +K GGTL+Y TC++ + EN++ + F EHPD E D +E+
Sbjct 363 ILREIAPLVKKGGTLVYSTCTMDRTENDEVIHAFIQEHPD-----FEPDLSLEKRLPEKV 417
Query 410 ----IHGR-QLLPVSGQGDGFYYCRIEK 432
GR Q+LP DGF+ C + K
Sbjct 418 RPFVRDGRLQILPHYFGTDGFFICSMRK 445
>Q5SK01 Ribosomal RNA small subunit methyltransferase B [Thermus
thermophilus (strain ATCC 27634 / DSM 579 / HB8)]
Length=398
Score = 102 bits (254), Expect = 6e-27
Identities = 112/424 (26%), Positives = 179/424 (42%), Gaps = 40/424 (9%)
Query 14 RAQVVATLLKVQQGQSLSGILHQQL--NDIPERDRALFHELVLGTLRQWYALKSITLPLL 71
RA VA LL+V +G +L + L + PERDRA LV G LR+ L + PLL
Sbjct 7 RALAVAVLLEVDRGGRAQLLLDRALRRSPWPERDRAYATFLVYGALRRLRLLDHLLAPLL 66
Query 72 TKPLN-NETVETCLYLGLYQVLCTRIPAHAAISETVTATKQLGFHALSGIVNAILRR-AT 129
+P V L LG + L + P HA +S V K+ + L+G+VNA+LRR A
Sbjct 67 PRPEGLPPEVRWILRLGALEWLEGK-PDHARVSPWVEEAKRR-YPGLAGLVNAVLRRLAP 124
Query 130 RETESFKNSLQQAHGLPSWMYKRLKKDWPAQLNELCQQLKYSAPLTLRINQRHIGRDAYL 189
RE LP W+ + W ++ ++ P L + AY
Sbjct 125 REAPECVRL-----SLPDWLCEA----WRGFFGDVAFAEGFNEPAPLFVT-------AY- 167
Query 190 IKLEAQDIQARACHISEAGIVIEQSVQITQLPGFEQGWFSVQDEHAQLCATLLPDLTDRV 249
+++ R + + + + L Q+ + A LL
Sbjct 168 -----REVDLRPGPVPGSYLWEGPKTDFSALG------LQPQNPASLFAAKLLEARPGER 216
Query 250 ILDACAAPGGKTAHLLEKFTPAHLIALDQDASRLVRVSENLKRLKLDQHHLEILAADATT 309
+LD C G K +L + A +++ D + R + +RL L H+ D T
Sbjct 217 VLDLCGGAGLKAFYLAAQ--GAEVVSYDLNRRRQEAGARTARRLGLWVHYR---TQDLTR 271
Query 310 WQSSQALDCIVLDAPCSATGVMRRHPDIRLLRQSTDIVQTVDLQKQILQHLWTQLKVGGT 369
+A ++LDAPC+ TG R HP++R D + LQ Q+L+ + GG
Sbjct 272 PVPERAKK-VLLDAPCTGTGTFRAHPELRYRLSPEDPARMAALQLQLLETAAQATEEGGV 330
Query 370 LLYITCSILKIENEQQMIEFFAEHPDAKEIKIEADWGIEQIHGRQLLPVSGQGDGFYYCR 429
L+Y C++ + E E + F A HP+ + ++ + + + G DGFYY +
Sbjct 331 LVYSVCTLTEEEGEGVVRAFLARHPEFRPEPVQPPFPVLARGLGVYVDPRGGLDGFYYAK 390
Query 430 IEKV 433
+ +V
Sbjct 391 LRRV 394
>Q9TYV5 26S rRNA (cytosine-C(5))-methyltransferase nsun-1 [Caenorhabditis
elegans]
Length=664
Score = 89.0 bits (219), Expect = 6e-22
Identities = 85/325 (26%), Positives = 146/325 (45%), Gaps = 25/325 (8%)
Query 133 ESFKNSLQQAHGLPSWMYKRLKKDWP--AQLNELCQQLKYSAPLTLRINQRHIGRDAYLI 190
E K L +G ++ + +P A+L E + P+T+R N + R
Sbjct 188 EVLKKDLCSQYGYNDYLMGKFMDLFPNGAELLEFLEANDNPRPVTIRANSLKVKRRDLAK 247
Query 191 KLEAQDIQAR-ACHISEAGIVIEQS-VQITQLPGFEQGWFSVQDEHAQL-CATLLPDLTD 247
L + + A ++ G+V+ S V + P + G + +Q ++ L L P D
Sbjct 248 NLINRGMNVDPAADWTKVGLVVYDSQVPVGATPEYLAGHYMIQGLNSLLPVMALAPQPGD 307
Query 248 RVILDACAAPGGKTAHLLEKFTPAH-LIALDQDASRLVRVSENLKRLKLDQHHLEILAAD 306
RV LD C+APGGKT+H+ + L A D + +R + NL RL ++ + L +
Sbjct 308 RV-LDMCSAPGGKTSHIAALMKNSGVLFANDANFTRCRAIIGNLHRLGVNNTVVCNLGGE 366
Query 307 ATTWQSSQALDCIVLDAPCSATGVMRRHPDIRLLRQSTDIVQTVDLQKQILQHLWTQLKV 366
+ D I+LDAPCS TGV+ + ++ + S D+ + +Q+Q++ L
Sbjct 367 EFSKIRPNGFDRILLDAPCSGTGVIWKDQSVKTSKDSQDVQRRHTMQRQLILSALDSLDA 426
Query 367 ----GGTLLYITCSILKIENEQQMIEFFAEHPDAKEIKIEADWGIE--------QIH--- 411
GG L+Y TCS+L ENE ++ F E + + G++ + H
Sbjct 427 NSPNGGYLVYSTCSVLVEENE-AVVNFLLERRHCELVPTGLSIGVDGYTRFRDYRFHPSL 485
Query 412 --GRQLLPVSGQGDGFYYCRIEKVA 434
++ P DGFY +I+K++
Sbjct 486 SMTKRYYPHVHNIDGFYVAKIKKLS 510
>P46087 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase
[Homo sapiens]
Length=812
Score = 88.6 bits (218), Expect = 9e-22
Identities = 83/300 (28%), Positives = 134/300 (45%), Gaps = 34/300 (11%)
Query 159 AQLNELCQQLKYSAPLTLRINQRHIGRDAYLIKLEAQDIQARACHISEAG-------IVI 211
++L E + + P+TLR N R AQ + R ++ G +V
Sbjct 295 SELVEFLEANEVPRPVTLRTNTLKTRRRDL-----AQALINRGVNLDPLGKWSKTGLVVY 349
Query 212 EQSVQITQLPGFEQGWFSVQDEHAQLCATLLPDLTDRVILDACAAPGGKTAHLLEKFTPA 271
+ SV I P + G + +Q + L L ILD C APGGKT+++ +
Sbjct 350 DSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNT 409
Query 272 HLI-ALDQDASRLVRVSENLKRLKLDQHHLEILAADATTWQSSQA-LDCIVLDAPCSATG 329
+I A D +A RL V NL RL + + I D + D ++LDAPCS TG
Sbjct 410 GVILANDANAERLKSVVGNLHRLGVT--NTIISHYDGRQFPKVVGGFDRVLLDAPCSGTG 467
Query 330 VMRRHPDIRLLRQSTDIVQTVDLQKQIL----QHLWTQLKVGGTLLYITCSILKIENEQQ 385
V+ + P ++ + DI++ LQK++L + K GG L+Y TCSI ENE
Sbjct 468 VISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVYCTCSITVEENE-W 526
Query 386 MIEFFAEHPDAKEIKIEADWGIE--------QIH-----GRQLLPVSGQGDGFYYCRIEK 432
++++ + + + + D+G E + H R+ P + DGF+ + +K
Sbjct 527 VVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLRSTRRFYPHTHNMDGFFIAKFKK 586
>Q922K7 Probable 28S rRNA (cytosine-C(5))-methyltransferase [Mus
musculus]
Length=793
Score = 88.2 bits (217), Expect = 1e-21
Identities = 90/356 (25%), Positives = 149/356 (42%), Gaps = 31/356 (9%)
Query 99 HAAISETVTATKQLGFHALSGIVNAILRRATRETESFKNSLQQAHGLPSWMYKRLKKDWP 158
H I + V + G G R + L + ++ +L + +P
Sbjct 225 HKRIQDIVGVLRDFGAQREEG------RSRAEYLSRLQKDLATYYSYGDFLLSKLMELFP 278
Query 159 -AQLNELCQQLKYSAPLTLRINQRHIGRD--AYLIKLEAQDIQARACHISEAGIVIEQSV 215
++L E + + P+TLR N R A L+ ++ +V + SV
Sbjct 279 LSELIEFLEANEVPRPITLRTNTLKTRRRDLAQLLINRGVNLDPLGKWSKSGLVVYDSSV 338
Query 216 QITQLPGFEQGWFSVQDEHAQLCATLLPDLTDRVILDACAAPGGKTAHLLEKFTPAHLI- 274
I P + G + +Q + L L ILD C APGGKT+++ + +I
Sbjct 339 PIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVIL 398
Query 275 ALDQDASRLVRVSENLKRLKLDQHHLEILAADATTWQSSQA-LDCIVLDAPCSATGVMRR 333
A D +A RL V NL RL + + I D + D ++LDAPCS TGV+ +
Sbjct 399 ANDANADRLKSVVGNLHRLGVT--NTIISHYDGRQFPKVVGGFDRVLLDAPCSGTGVISK 456
Query 334 HPDIRLLRQSTDIVQTVDLQKQIL----QHLWTQLKVGGTLLYITCSILKIENEQQMIEF 389
P ++ + DI + LQK++L + K GG L+Y TCSI ENE ++++
Sbjct 457 DPAVKTNKDEKDIQRCAHLQKELLLSAIDSVNAASKTGGYLVYCTCSITVEENE-WVVDY 515
Query 390 FAEHPDAKEIKIEADWGIE--------QIH-----GRQLLPVSGQGDGFYYCRIEK 432
+ + + + D+G E + H R+ P + DGF+ + +K
Sbjct 516 ALKKRNVRLVPTGLDFGQEGFTRFQARRFHPTLRSTRRFYPHTHNMDGFFIAKFKK 571
>O57712 tRNA (cytosine(72)-C(5))-methyltransferase [Pyrococcus
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC
100139 / OT-3)]
Length=389
Score = 85.9 bits (211), Expect = 2e-21
Identities = 66/220 (30%), Positives = 109/220 (50%), Gaps = 8/220 (4%)
Query 217 ITQLPGFEQGWFSVQDEHAQLCATLLPDLTDRVILDACAAPGGKTAHLLEKF-TPAHLIA 275
+++L FE+G+F Q + + A +L D VI+D AAPGGKT H+ + +IA
Sbjct 172 LSELKAFEKGYFYPQGLPSMVTARVLEPKEDDVIIDMAAAPGGKTTHIAQLLENKGEIIA 231
Query 276 LDQDASRLVRVSENLKRLKLDQHHLEILAADATTWQS-SQALDCIVLDAPCSATGVMRRH 334
+D+ +RL ++ EN+KRL + +++++ DA D I+LDAPC+A GV +
Sbjct 232 IDKSKNRLRKMEENIKRLGV--KNVKLVQMDARKLPDLGIKADKILLDAPCTALGVRPKL 289
Query 335 PDIRLLRQSTDIVQTVDLQKQILQHLWTQLKVGGTLLYITCSILKIENEQQMIEFFAEHP 394
+ R L+ I T Q+ + L+ GG L+Y TC++ ENE + +
Sbjct 290 WEERTLKH---IEATARYQRAFIWAAIKSLRRGGVLVYSTCTLSYEENEGNVKFMIRKGM 346
Query 395 DAKEIKI-EADWGIEQIHGRQLLPVSGQGDGFYYCRIEKV 433
+E I GI ++ P GF+ ++ KV
Sbjct 347 KLEEQSIFIGSPGIGMNKVQRFYPHKHLTQGFFIAKLRKV 386
>Q9FG73 25S rRNA (cytosine-C(5))-methyltransferase NOP2A [Arabidopsis
thaliana]
Length=682
Score = 85.5 bits (210), Expect = 8e-21
Identities = 82/324 (25%), Positives = 143/324 (44%), Gaps = 23/324 (7%)
Query 133 ESFKNSLQQAHGLPSWMYKRLKKDWP-AQLNELCQQLKYSAPLTLRINQ-RHIGRDAYLI 190
E K L +G S++ L + +P +L EL + + P ++R N + RD +
Sbjct 243 EQLKADLGSYYGYNSFLIGTLVEMFPPGELMELIEAFEKQRPTSIRTNTLKTRRRDLADV 302
Query 191 KLEAQDIQARACHISEAGIVIEQS-VQITQLPGFEQGWFSVQDEHAQLCATLLPDLTDRV 249
L S+ G+VI S V I P + G++ +Q + L L +
Sbjct 303 LLNRGVNLDPLSKWSKVGLVIYDSQVPIGATPEYLAGYYMLQGASSFLPVMALAPRENER 362
Query 250 ILDACAAPGGKTAHLLEKFTPAHLI-ALDQDASRLVRVSENLKRLKLDQHHL-EILAADA 307
I+D AAPGGKT ++ LI A + RL ++ NL R+ + + +
Sbjct 363 IVDVAAAPGGKTTYIAALMKNTGLIYANEMKVPRLKSLTANLHRMGVTNTIVCNYDGREL 422
Query 308 TTWQSSQALDCIVLDAPCSATGVMRRHPDIRLLRQSTDIVQTVDLQKQIL----QHLWTQ 363
+D ++LDAPCS TG++ + +++ + +I + LQKQ+L +
Sbjct 423 PKVLGQNTVDRVLLDAPCSGTGIISKDESVKITKTMDEIKKFAHLQKQLLLAAIDMVDAN 482
Query 364 LKVGGTLLYITCSILKIENEQQMIEFFAEHPDAKEIKIEADWGIEQI------------- 410
K GG ++Y TCSI+ ENE +I++ + D K + D+G +
Sbjct 483 SKTGGYIVYSTCSIMVTENE-AVIDYALKKRDVKLVTCGLDFGRKGFTRFREHRFQPSLD 541
Query 411 HGRQLLPVSGQGDGFYYCRIEKVA 434
R+ P DGF+ +++K++
Sbjct 542 KTRRFYPHVHNMDGFFVAKLKKMS 565
>Q8VYM6 26S rRNA (cytosine-C(5))-methyltransferase NOP2B [Arabidopsis
thaliana]
Length=671
Score = 82.8 bits (203), Expect = 6e-20
Identities = 80/321 (25%), Positives = 144/321 (45%), Gaps = 23/321 (7%)
Query 136 KNSLQQAHGLPSWMYKRLKKDWPA-QLNELCQQLKYSAPLTLRINQ-RHIGRDAYLIKLE 193
K L +G ++ L + +P +L EL + + P ++R N + RD I L
Sbjct 229 KADLSSYYGYNEFLIGTLIEMFPVVELMELIEAFEKKRPTSIRTNTLKTRRRDLADILLN 288
Query 194 AQDIQARACHISEAGIVIEQS-VQITQLPGFEQGWFSVQDEHAQLCATLLPDLTDRVILD 252
S+ G+++ S V I P + G++ +Q + L L ++D
Sbjct 289 RGVNLDPLSKWSKVGLIVYDSQVPIGATPEYLAGFYMLQSASSFLPVMALAPREKERVVD 348
Query 253 ACAAPGGKTAHLLEKFTPAHLI-ALDQDASRLVRVSENLKRLKLDQHHL-EILAADATTW 310
AAPGGKT ++ +I A + RL +S NL R+ + + + T
Sbjct 349 MAAAPGGKTTYVAALMKNTGIIYANEMKVPRLKSLSANLHRMGVTNTIVCNYDGRELTKV 408
Query 311 QSSQALDCIVLDAPCSATGVMRRHPDIRLLRQSTDIVQTVDLQKQI----LQHLWTQLKV 366
++D ++LDAPCS TGV+ + ++ + + DI + LQKQ+ + + K
Sbjct 409 LGQSSVDRVLLDAPCSGTGVISKDESVKTSKSADDIKKFAHLQKQLILGAIDLVDANSKT 468
Query 367 GGTLLYITCSILKIENEQQMIEFFAEHPDAKEIKIEADWG--------IEQIH-----GR 413
GG ++Y TCS++ ENE +I++ ++ D K + D+G + H R
Sbjct 469 GGYIVYSTCSVMIPENE-AVIDYALKNRDVKLVPCGLDFGRPGFSSFREHRFHPSLEKTR 527
Query 414 QLLPVSGQGDGFYYCRIEKVA 434
+ P DGF+ +++K++
Sbjct 528 RFYPHVHNMDGFFVAKLKKMS 548
Score = 18.9 bits (37), Expect = 7.7
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 0/25 (0%)
Query 270 PAHLIALDQDASRLVRVSENLKRLK 294
P L +L +VR+ N K LK
Sbjct 189 PPDLPSLQMRIREIVRILSNFKDLK 213
Lambda K H a alpha
0.323 0.136 0.407 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3411093
Database: 6ed71c2f0df7e0ee7ee1f4f910d71351.SwissProt.fasta
Posted date: May 12, 2024 10:27 PM
Number of letters in database: 10,033
Number of sequences in database: 20
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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