BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: d25686e84c952253d4ca883b6a391424.SwissProt.fasta
           17 sequences; 5,223 total letters



Query= ACIAD3615

Length=303
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P30864 Uncharacterized HTH-type transcriptional regulator YafC [E...  241     6e-82
P43011 Uncharacterized HTH-type transcriptional regulator HI_1364...  142     1e-43
P37641 Uncharacterized HTH-type transcriptional regulator YhjC [E...  139     1e-42
A0A0H2ZDG9 HTH-type transcriptional repressor PA14_22550 [Pseudom...  136     2e-41
P72131 HTH-type transcriptional regulator PtxR [Pseudomonas aerug...  135     4e-41
Q1R6S1 HTH-type transcriptional activator TtdR [Escherichia coli ...  124     1e-36
Q8FDH0 HTH-type transcriptional activator TtdR [Escherichia coli ...  124     1e-36
Q0TD46 HTH-type transcriptional activator TtdR [Escherichia coli ...  123     2e-36
P45463 HTH-type transcriptional activator TtdR [Escherichia coli ...  123     2e-36
P76250 HTH-type transcriptional regulator DmlR [Escherichia coli ...  122     4e-36
P52689 Probable HTH-type transcriptional regulator LtrA [Klebsiel...  122     5e-36
P67663 HTH-type transcriptional activator AaeR [Escherichia coli ...  122     5e-36
P67664 HTH-type transcriptional activator AaeR [Escherichia coli ...  122     5e-36
P67662 HTH-type transcriptional activator AaeR [Escherichia coli ...  122     5e-36
P77333 HTH-type transcriptional regulator PgrR [Escherichia coli ...  112     1e-32
Q01610 Putative transcriptional regulator [Pseudomonas aeruginosa...  94.4    1e-25
P37459 Probable HTH-type transcriptional regulator SinR [Salmonel...  84.0    7e-22


>P30864 Uncharacterized HTH-type transcriptional regulator YafC 
[Escherichia coli (strain K12)]
Length=304

 Score = 241 bits (614),  Expect = 6e-82
 Identities = 126/293 (43%), Positives = 193/293 (66%), Gaps = 1/293 (0%)

Query  1    VKSTVEELIAFITIVDTGSIVGAAEQLQQTPSGVSRSLNRLEKKLNVTLLERTTRKIKLT  60
            +K+T EEL  F+++V++GS   AAEQL Q  S VSR++ +LE KL V+LL RTTR++ LT
Sbjct  1    MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT  60

Query  61   QEGSLFLMRARTILADLSDAEEALLKSDSDTSGLIRIDSATPFVLHVLAPLMQKFMQLYP  120
            +EG  +  R ++IL +++ AE  ++++ +   GL+RID+ATP VLH L PL++ F + YP
Sbjct  61   EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP  120

Query  121  HIEIELNSNDQVIDLLQHKTDVAIRFGALHDSSLHARLICKSRLYIVASPDYLKKAGTPS  180
             + + L S++ +I+L++ K DVAIR G L DSSL AR +  S   I+ASPDY+ + G P 
Sbjct  121  EVTLSLVSSETIINLIERKVDVAIRAGTLTDSSLRARPLFNSYRKIIASPDYISRYGKPE  180

Query  181  HPQELFQHQLVGFSKPVYLNTWPLKIEDEYI-TVHPQIKASSGETVRQLTLRGHGIARLS  239
               +L QH  +GF++P  LNTWP+   D  +  V   + ++SGET++QL L G+GIA LS
Sbjct  181  TIDDLKQHICLGFTEPASLNTWPIARSDGQLHEVKYGLSSNSGETLKQLCLSGNGIACLS  240

Query  240  EYEIWQDLQAGSLIALFEDQIEIQLQHIHAVYYQQKHLPKRVRLFIDFLADEL  292
            +Y I +++  G L+ L  D++        AVYY  + +  R+R FIDFL++ +
Sbjct  241  DYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHV  293


>P43011 Uncharacterized HTH-type transcriptional regulator HI_1364 
[Haemophilus influenzae (strain ATCC 51907 / DSM 11121 
/ KW20 / Rd)]
Length=288

 Score = 142 bits (357),  Expect = 1e-43
 Identities = 85/273 (31%), Positives = 148/273 (54%), Gaps = 3/273 (1%)

Query  11   FITIVDTGSIVGAAEQLQQTPSGVSRSLNRLEKKLNVTLLERTTRKIKLTQEGSLFLMRA  70
            F  +++T S   AA+Q   + +  S+ +++LE+ L   LL+RTTRKI  T+ G ++  R 
Sbjct  10   FCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTEAGMMYYQRC  69

Query  71   RTILADLSDAEEALLKSDSDTSGLIRIDSATPFVLHVLAPLMQKFMQLYPHIEIELNSND  130
            + IL DL +A+ ++ +  S   G + I     F L  +AP +  FM  +PH+ IE+  ND
Sbjct  70   QGILLDLDEADSSITQLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPHLHIEVEFND  129

Query  131  QVIDLLQHKTDVAIRFGALHDSSLHARLICKSRLYIVASPDYLKKAGTPSHPQELFQHQL  190
            + IDLL    D+A+R G + DSSL +R I  + ++  ASP+YL+  G P  P +L  H  
Sbjct  130  KKIDLLSEGYDLALRIGYMEDSSLVSRKIGTTTVHFAASPNYLETNGIPQTPDDLEHHNG  189

Query  191  VGFSKPVYLNTW--PLKIEDEYITVHPQIKASSGETVRQLTLRGHGIARLSEYEIWQDLQ  248
            + +   +    W      + +   +  ++ ++SG  +  +   G GIA L ++ + +  +
Sbjct  190  LLYKNAMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLGIANLPKFILGRAFE  249

Query  249  AGSLIALFEDQIEIQLQHIHAVYYQQKHLPKRV  281
             G LI +  +  + +L+ IH VY  ++HLP +V
Sbjct  250  KGELIEILPEYKQQKLE-IHVVYPNRRHLPIKV  281


>P37641 Uncharacterized HTH-type transcriptional regulator YhjC 
[Escherichia coli (strain K12)]
Length=299

 Score = 139 bits (351),  Expect = 1e-42
 Identities = 91/290 (31%), Positives = 148/290 (51%), Gaps = 9/290 (3%)

Query  11   FITIVDTGSIVGAAEQLQQTPSGVSRSLNRLEKKLNVTLLERTTRKIKLTQEGSLFLMRA  70
            FI + +  S   AA+        VSR +  LE +L   LL+RTTR++KLT EG  +  RA
Sbjct  10   FIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYYQRA  69

Query  71   RTILADLSDAEEALLKSDSDTSGLIRIDSATPFVLHVLAPLMQKFMQLYPHIEIELNSND  130
            + +L++LS+ +    +  +  SG +RID        +L P + +F+ L+P IE+EL+S+D
Sbjct  70   KDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELSSHD  129

Query  131  QVIDLLQHKTDVAIRFGALHDSSLHARLICKSRLYIVASPDYLKKAGTPSHPQELFQHQL  190
            + +D+L    D  IR GAL +  + AR + K  +   ASP YL + G P  P +L  H +
Sbjct  130  RPVDILHDGFDCVIRTGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLTSHAI  189

Query  191  VGFSKPVYLNTWPLKIE------DEYITVHPQIKASSGETVRQLTLRGHGIARLSEYEIW  244
            V ++   +L   PL  E       ++      +  +S E      L G GI ++    + 
Sbjct  190  VRYTP--HLGVHPLGFEVASVNGVQWFKSGGMLTVNSSENYLTAGLAGLGIIQIPRIAVR  247

Query  245  QDLQAGSLIALFEDQIEIQLQHIHAVYYQQKHLPKRVRLFIDFLADELSQ  294
            + L+AG LI +        L  +  VY Q++ L +RV LF+ +LA  + +
Sbjct  248  EALRAGRLIEVLPGYRAEPLS-LSLVYPQRRELSRRVNLFMQWLAGVMKE  296


>A0A0H2ZDG9 HTH-type transcriptional repressor PA14_22550 [Pseudomonas 
aeruginosa (strain UCBPP-PA14)]
Length=317

 Score = 136 bits (343),  Expect = 2e-41
 Identities = 85/287 (30%), Positives = 144/287 (50%), Gaps = 5/287 (2%)

Query  8    LIAFITIVDTGSIVGAAEQLQQTPSGVSRSLNRLEKKLNVTLLERTTRKIKLTQEGSLFL  67
            +  F+ +VD GS   AA+ L    + VS+ ++ LEK L V LL RTTR + LT +GS + 
Sbjct  7    MATFVKVVDAGSFTRAADALGLPKARVSQRVSDLEKHLGVRLLNRTTRALSLTHDGSAYF  66

Query  68   MRARTILADLSDAEEALLKSDSDTSGLIRIDSATPFVLHVLAPLMQKFMQLYPHIEIELN  127
             + + +L  + + E  L    +   G +R+DS       V+AP +  F   YP I++ L+
Sbjct  67   DKCQVLLQQIDELEATLRGGTATPIGRLRVDSLITIARWVIAPRLHDFQARYPRIQLRLS  126

Query  128  SNDQVIDLLQHKTDVAIRFGALHDSSLHARLICKSRLYIVASPDYLKKAGTPSHPQELFQ  187
            S+D++ +LL+   D  IR GAL DSS+ AR +C  ++ + ASP+YL   G    P +L Q
Sbjct  127  SSDRISNLLEDGIDCTIRGGALKDSSMIARHLCDIQMGLYASPEYLASIGGVDSPNDLSQ  186

Query  188  HQLVGFSKPVYLN--TWPLKIEDEYITVH--PQIKASSGETVRQLTLRGHGIARLSEYEI  243
             + + +      N   W L+   E   V     ++    +      + G GI   + + +
Sbjct  187  FRRLSWFSGRERNPFMWELESGPERFVVQSGDGMQFDEPDVAISACMAGSGICPGAPFAV  246

Query  244  WQDLQAGSLIALFEDQIEIQLQHIHAVYYQQKHLPKRVRLFIDFLAD  290
               ++AG L+ +   Q       +H +Y   +HL  RVR F++++ +
Sbjct  247  AGFVRAGKLVPVL-PQWHFSAAPVHVIYPGSRHLSVRVRCFVNWVME  292


>P72131 HTH-type transcriptional regulator PtxR [Pseudomonas aeruginosa 
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 
14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=312

 Score = 135 bits (341),  Expect = 4e-41
 Identities = 86/293 (29%), Positives = 152/293 (52%), Gaps = 3/293 (1%)

Query  5    VEELIAFITIVDTGSIVGAAEQLQQTPSGVSRSLNRLEKKLNVTLLERTTRKIKLTQEGS  64
            +  L AF+ + +  S   AAE L  + S +S  L RLE  L + LL RTTR++ LT  G 
Sbjct  13   LNHLYAFVAVAEHNSFTAAAEALGLSKSLLSEQLRRLEADLGIQLLTRTTRRMTLTDRGE  72

Query  65   LFLMRARTILADLSDAEEALLKSDSDTSGLIRIDSATPFVLHVLAPLMQKFMQLYPHIEI  124
            L    A+ +L +L  A   +     + SG +RI +   FV   ++ +   F++ +P +++
Sbjct  73   LLFGVAQRMLGELDGALSDVRDLQGEPSGRLRITAPQDFVKWHISSVSAAFIRQFPKVQV  132

Query  125  ELNSNDQVIDLLQHKTDVAIRFGALHDSSLHARLICKSRLYIVASPDYLKKAGTPSHPQE  184
            E+ ++DQ  DL+  + D+A+R G   DS LHA  +C  +   VA+P YL        P +
Sbjct  133  EMLADDQFSDLVGQRIDLAVRIGWPRDSGLHASKLCDFQQVAVATPGYLAGLPPVLQPHD  192

Query  185  LFQHQLVGFSKPVYLNTWPLKIEDEYITVHP--QIKASSGETVRQLTLRGHGIARLSEYE  242
            L + + +G ++     TW  + + E  TV    ++ A++   V +L L G G++ L  + 
Sbjct  193  LARCEWIGHTRLSTPWTWTFERQRERATVQTRGRLLANNTLAVYRLVLDGAGVSVLPSFL  252

Query  243  IWQDLQAGSLIALFEDQIEIQLQHIHAVYYQQKHLPKRVRLFIDFLADELSQQ  295
            + +++  G L+ L      +    I+A+Y   +++P RVR FI+ L + L ++
Sbjct  253  VAREIARGRLVRLLPGW-RLPQGGIYALYPSARYMPVRVRAFIESLREHLGRE  304


>Q1R6S1 HTH-type transcriptional activator TtdR [Escherichia coli 
(strain UTI89 / UPEC)]
Length=310

 Score = 124 bits (310),  Expect = 1e-36
 Identities = 86/287 (30%), Positives = 144/287 (50%), Gaps = 5/287 (2%)

Query  6    EELIAFITIVDTGSIVGAAEQLQQTPSGVSRSLNRLEKKLNVTLLERTTRKIKLTQEGSL  65
            ++L   + IV +GS   AA  L QTP+ V++ +  LE  L  TLL R+ R + LT+ G  
Sbjct  9    KDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQR  68

Query  66   FLMRARTILADLSDAEEALLKSDSDTSGLIRIDSATPFVLHVLAPLMQKFMQLYPHIEIE  125
                A  IL       + + +  +   G+IRI  +  F    +AP + + M+ YP +++ 
Sbjct  69   CYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVH  128

Query  126  LNSNDQVIDLLQHKTDVAIRFGALHDSSLHARLICKSRLYIVASPDYLKKAGTPSHPQEL  185
                D+ IDL+Q   D+ IR          A L+ K++  + A+P+YL+K   P   QEL
Sbjct  129  FELFDRQIDLVQDNIDLDIRINDAIPDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQEL  188

Query  186  FQHQ-LVGFSKPVYLNTWPL--KIEDEYITVHPQIKASSGETVRQLTLRGHGIARLSEYE  242
             +H  LV   + +    W L    E + + V   + ++SGE V Q  L G GI   SE++
Sbjct  189  SRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSEWD  248

Query  243  IWQDLQAGSLIALFEDQIEIQLQHIHAVYYQQKHLPKRVRLFIDFLA  289
            +   L++G L+ +  +    Q  +I AVY +  +   ++R+ ++FLA
Sbjct  249  VLPFLESGKLVRVLPEY--AQSANIWAVYREPLYRSMKLRVCVEFLA  293


 Score = 17.3 bits (33),  Expect = 7.6
 Identities = 5/6 (83%), Positives = 6/6 (100%), Gaps = 0/6 (0%)

Query  199  LNTWPL  204
            LN+WPL
Sbjct  2    LNSWPL  7


>Q8FDH0 HTH-type transcriptional activator TtdR [Escherichia coli 
O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=310

 Score = 124 bits (310),  Expect = 1e-36
 Identities = 86/287 (30%), Positives = 144/287 (50%), Gaps = 5/287 (2%)

Query  6    EELIAFITIVDTGSIVGAAEQLQQTPSGVSRSLNRLEKKLNVTLLERTTRKIKLTQEGSL  65
            ++L   + IV +GS   AA  L QTP+ V++ +  LE  L  TLL R+ R + LT+ G  
Sbjct  9    KDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQR  68

Query  66   FLMRARTILADLSDAEEALLKSDSDTSGLIRIDSATPFVLHVLAPLMQKFMQLYPHIEIE  125
                A  IL       + + +  +   G+IRI  +  F    +AP + + M+ YP +++ 
Sbjct  69   CYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVH  128

Query  126  LNSNDQVIDLLQHKTDVAIRFGALHDSSLHARLICKSRLYIVASPDYLKKAGTPSHPQEL  185
                D+ IDL+Q   D+ IR          A L+ K++  + A+P+YL+K   P   QEL
Sbjct  129  FELFDRQIDLVQDNIDLDIRINDAIPDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQEL  188

Query  186  FQHQ-LVGFSKPVYLNTWPL--KIEDEYITVHPQIKASSGETVRQLTLRGHGIARLSEYE  242
             +H  LV   + +    W L    E + + V   + ++SGE V Q  L G GI   SE++
Sbjct  189  SRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSEWD  248

Query  243  IWQDLQAGSLIALFEDQIEIQLQHIHAVYYQQKHLPKRVRLFIDFLA  289
            +   L++G L+ +  +    Q  +I AVY +  +   ++R+ ++FLA
Sbjct  249  VLPFLESGKLVRVLPEY--AQSANIWAVYREPLYRSMKLRVCVEFLA  293


 Score = 17.3 bits (33),  Expect = 7.6
 Identities = 5/6 (83%), Positives = 6/6 (100%), Gaps = 0/6 (0%)

Query  199  LNTWPL  204
            LN+WPL
Sbjct  2    LNSWPL  7


>Q0TD46 HTH-type transcriptional activator TtdR [Escherichia coli 
O6:K15:H31 (strain 536 / UPEC)]
Length=310

 Score = 123 bits (308),  Expect = 2e-36
 Identities = 86/287 (30%), Positives = 144/287 (50%), Gaps = 5/287 (2%)

Query  6    EELIAFITIVDTGSIVGAAEQLQQTPSGVSRSLNRLEKKLNVTLLERTTRKIKLTQEGSL  65
            ++L   + IV +GS   AA  L QTP+ V++ +  LE  L  TLL R+ R + LT+ G  
Sbjct  9    KDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQR  68

Query  66   FLMRARTILADLSDAEEALLKSDSDTSGLIRIDSATPFVLHVLAPLMQKFMQLYPHIEIE  125
                A  IL       + + +  +   G+IRI  +  F    +AP + + M+ YP +++ 
Sbjct  69   CYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVH  128

Query  126  LNSNDQVIDLLQHKTDVAIRFGALHDSSLHARLICKSRLYIVASPDYLKKAGTPSHPQEL  185
                D+ IDL+Q   D+ IR          A L+ K++  + A+P+YL+K   P   QEL
Sbjct  129  FELFDRQIDLVQDNIDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQEL  188

Query  186  FQHQ-LVGFSKPVYLNTWPL--KIEDEYITVHPQIKASSGETVRQLTLRGHGIARLSEYE  242
             +H  LV   + +    W L    E + + V   + ++SGE V Q  L G GI   SE++
Sbjct  189  SRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSEWD  248

Query  243  IWQDLQAGSLIALFEDQIEIQLQHIHAVYYQQKHLPKRVRLFIDFLA  289
            +   L++G L+ +  +    Q  +I AVY +  +   ++R+ ++FLA
Sbjct  249  VLPFLESGKLVRVLPEY--AQSANIWAVYREPLYRSMKLRVCVEFLA  293


 Score = 17.3 bits (33),  Expect = 7.6
 Identities = 5/6 (83%), Positives = 6/6 (100%), Gaps = 0/6 (0%)

Query  199  LNTWPL  204
            LN+WPL
Sbjct  2    LNSWPL  7


>P45463 HTH-type transcriptional activator TtdR [Escherichia coli 
(strain K12)]
Length=310

 Score = 123 bits (308),  Expect = 2e-36
 Identities = 86/287 (30%), Positives = 144/287 (50%), Gaps = 5/287 (2%)

Query  6    EELIAFITIVDTGSIVGAAEQLQQTPSGVSRSLNRLEKKLNVTLLERTTRKIKLTQEGSL  65
            ++L   + IV +GS   AA  L QTP+ V++ +  LE  L  TLL R+ R + LT+ G  
Sbjct  9    KDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQR  68

Query  66   FLMRARTILADLSDAEEALLKSDSDTSGLIRIDSATPFVLHVLAPLMQKFMQLYPHIEIE  125
                A  IL       + + +  +   G+IRI  +  F    +AP + + M+ YP +++ 
Sbjct  69   CYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVH  128

Query  126  LNSNDQVIDLLQHKTDVAIRFGALHDSSLHARLICKSRLYIVASPDYLKKAGTPSHPQEL  185
                D+ IDL+Q   D+ IR          A L+ K++  + A+P+YL+K   P   QEL
Sbjct  129  FELFDRQIDLVQDNIDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQEL  188

Query  186  FQHQ-LVGFSKPVYLNTWPL--KIEDEYITVHPQIKASSGETVRQLTLRGHGIARLSEYE  242
             +H  LV   + +    W L    E + + V   + ++SGE V Q  L G GI   SE++
Sbjct  189  SRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSEWD  248

Query  243  IWQDLQAGSLIALFEDQIEIQLQHIHAVYYQQKHLPKRVRLFIDFLA  289
            +   L++G L+ +  +    Q  +I AVY +  +   ++R+ ++FLA
Sbjct  249  VLPFLESGKLVQVLPEY--AQSANIWAVYREPLYRSMKLRVCVEFLA  293


 Score = 17.3 bits (33),  Expect = 7.6
 Identities = 5/6 (83%), Positives = 6/6 (100%), Gaps = 0/6 (0%)

Query  199  LNTWPL  204
            LN+WPL
Sbjct  2    LNSWPL  7


>P76250 HTH-type transcriptional regulator DmlR [Escherichia coli 
(strain K12)]
Length=307

 Score = 122 bits (306),  Expect = 4e-36
 Identities = 81/295 (27%), Positives = 148/295 (50%), Gaps = 5/295 (2%)

Query  5    VEELIAFITIVDTGSIVGAAEQLQQTPSGVSRSLNRLEKKLNVTLLERTTRKIKLTQEGS  64
            + +L  F+ +         AE+L  +P+ VS+ +  LE+ LNV LL RTTR++ +T+EG 
Sbjct  7    LNDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGE  66

Query  65   LFLMRARTILADLSDAEEALLKSDSDTSGLIRIDSATPFVLHVLAPLMQKFMQLYPHIEI  124
                 A+ IL D+    + L        G++RI S+  F   V+AP +    + YP +E+
Sbjct  67   RIYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALLALAKAYPQLEL  126

Query  125  ELNSNDQVIDLLQHKTDVAIRFGALHDSSLHARLICKSRLYIVASPDYLKKAGTPSHPQE  184
              +  D+++DL+    D+ IR G     +L AR +  +   + ASP+++ + G P H  +
Sbjct  127  RFDVEDRLVDLVNEGVDLDIRIGDDIAPNLIARKLATNYRILCASPEFIAQHGAPKHLTD  186

Query  185  LFQHQ-LVGFSKPVYLNTWPLKIED--EYITVHPQIKASSGETVRQLTLRGHGIARLSEY  241
            L     LV   +      W L+ ++    I V   + ++ GE V Q  L G GIA  S +
Sbjct  187  LSALPCLVIKERDHPFGVWQLRNKEGPHAIKVTGPLSSNHGEIVHQWCLDGQGIALRSWW  246

Query  242  EIWQDLQAGSLIALFEDQIEIQLQHIHAVYYQQKHLPKRVRLFIDFLADELSQQF  296
            ++ +++ +G L+ +  +    Q  ++ AVY  +     +VR+ ++FL    ++ +
Sbjct  247  DVSENIASGHLVQVLPEY--YQPANVWAVYVSRLATSAKVRITVEFLRQYFAEHY  299


>P52689 Probable HTH-type transcriptional regulator LtrA [Klebsiella 
pneumoniae]
Length=309

 Score = 122 bits (306),  Expect = 5e-36
 Identities = 82/288 (28%), Positives = 137/288 (48%), Gaps = 4/288 (1%)

Query  7    ELIAFITIVDTGSIVGAAEQLQQTPSGVSRSLNRLEKKLNVTLLERTTRKIKLTQEGSLF  66
            +L  F+ IVD GS    A Q   TPS VSRS++RLE+++   LL+RTTRK++L+  G   
Sbjct  8    DLALFVQIVDQGSFSAVARQNGITPSAVSRSVSRLEREMGCKLLQRTTRKLRLSDAGETI  67

Query  67   LMRARTILADLSDAEEALLKSDSDTSGLIRIDSATPFVLHVLAPLMQKFMQLYPHIEIEL  126
               A+ +L     A ++     +   G + +         V+ PLM  F   YP +++ L
Sbjct  68   YQHAQQMLEAARQAMDSAGSRQTVAQGKLTLSVPKAVGRFVIHPLMMAFFHRYPQVDVCL  127

Query  127  NSNDQVIDLLQHKTDVAIRFGALHDSSLHARLICKSRLYIVASPDYLKKAGTPSHPQELF  186
               D+ +D +    D+A+R        LH + +   R  I A+  YL++ GTP  PQ+L 
Sbjct  128  RLEDRPLDFIDDGIDLALRITDTPSPGLHGKPLMPIRHVICATEAYLQQHGTPYTPQDLR  187

Query  187  QHQLVGFSKPVYLNTWPLKIEDEYITVHPQIKASSGET-VRQLTLRGH-GIARLSEYEIW  244
             H  +   +      W  + E +  TV    + ++  T VR   +R H GI  L  +   
Sbjct  188  AHSCISLGETPADARWKFRREGKTETVQTYGRYAANHTAVRLDAVRQHLGIGSLPLFTAR  247

Query  245  QDLQAGSLIALFEDQ--IEIQLQHIHAVYYQQKHLPKRVRLFIDFLAD  290
            + L  G ++ +  +   I      +  ++   KH+P R+R  ID+L++
Sbjct  248  EALANGDIVQVLPEWEFISSYSGDLWLLWAGDKHMPARMRAMIDYLSE  295


>P67663 HTH-type transcriptional activator AaeR [Escherichia coli 
O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=309

 Score = 122 bits (306),  Expect = 5e-36
 Identities = 84/298 (28%), Positives = 149/298 (50%), Gaps = 23/298 (8%)

Query  5    VEELIAFITIVDTGSIVGAAEQLQQTPSGVSRSLNRLEKKLNVTLLERTTRKIKLTQEGS  64
            ++ +  F  +V+ GS   AA QLQ + S +S+++++LE +L V LL R+TR I LT+ G 
Sbjct  4    LKRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGR  63

Query  65   LFLMRARTILADLSDAEEALLKSDSDTSGLIRIDSATPFVLHVLAPLMQKFMQLYPHIEI  124
            ++    R +L ++ D  E L   ++   G +RI  ++    +VLA L  K ++ YP + +
Sbjct  64   IYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSV  123

Query  125  ELNSNDQVIDLLQHKTDVAIRFGALHDSSLHARLICKSRLYIVASPDYLKKAGTPSHPQE  184
             L +     DL+    DV IR GAL DSSL +R +    + + A+  YL + G P  P +
Sbjct  124  NLVTGIPAPDLIADGLDVVIRVGALQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPAD  183

Query  185  LFQHQLVGFSKPVYLNTWPLKIEDEYITVHPQ------------IKASSGETVRQLTLRG  232
            L  H  + +S         ++ ++E+  + P+            +       VR LT  G
Sbjct  184  LSSHSWLEYS---------VRPDNEFELIAPEGISTRLIPQGRFVTNDPMTLVRWLT-AG  233

Query  233  HGIARLSEYEIWQDLQAGSLIALFEDQIEIQLQHIHAVYYQQKHLPKRVRLFIDFLAD  290
             GIA +    +  ++  G L  L   + +   + ++A+Y ++  LP +V++ I+ L D
Sbjct  234  AGIAYVPLMWVINEINRGELEILL-PRYQSDPRPVYALYTEKDKLPLKVQVVINSLTD  290


>P67664 HTH-type transcriptional activator AaeR [Escherichia coli 
O157:H7]
Length=309

 Score = 122 bits (306),  Expect = 5e-36
 Identities = 84/298 (28%), Positives = 149/298 (50%), Gaps = 23/298 (8%)

Query  5    VEELIAFITIVDTGSIVGAAEQLQQTPSGVSRSLNRLEKKLNVTLLERTTRKIKLTQEGS  64
            ++ +  F  +V+ GS   AA QLQ + S +S+++++LE +L V LL R+TR I LT+ G 
Sbjct  4    LKRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGR  63

Query  65   LFLMRARTILADLSDAEEALLKSDSDTSGLIRIDSATPFVLHVLAPLMQKFMQLYPHIEI  124
            ++    R +L ++ D  E L   ++   G +RI  ++    +VLA L  K ++ YP + +
Sbjct  64   IYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSV  123

Query  125  ELNSNDQVIDLLQHKTDVAIRFGALHDSSLHARLICKSRLYIVASPDYLKKAGTPSHPQE  184
             L +     DL+    DV IR GAL DSSL +R +    + + A+  YL + G P  P +
Sbjct  124  NLVTGIPAPDLIADGLDVVIRVGALQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPAD  183

Query  185  LFQHQLVGFSKPVYLNTWPLKIEDEYITVHPQ------------IKASSGETVRQLTLRG  232
            L  H  + +S         ++ ++E+  + P+            +       VR LT  G
Sbjct  184  LSSHSWLEYS---------VRPDNEFELIAPEGISTRLIPQGRFVTNDPMTLVRWLT-AG  233

Query  233  HGIARLSEYEIWQDLQAGSLIALFEDQIEIQLQHIHAVYYQQKHLPKRVRLFIDFLAD  290
             GIA +    +  ++  G L  L   + +   + ++A+Y ++  LP +V++ I+ L D
Sbjct  234  AGIAYVPLMWVINEINRGELEILL-PRYQSDPRPVYALYTEKDKLPLKVQVVINSLTD  290


>P67662 HTH-type transcriptional activator AaeR [Escherichia coli 
(strain K12)]
Length=309

 Score = 122 bits (306),  Expect = 5e-36
 Identities = 84/298 (28%), Positives = 149/298 (50%), Gaps = 23/298 (8%)

Query  5    VEELIAFITIVDTGSIVGAAEQLQQTPSGVSRSLNRLEKKLNVTLLERTTRKIKLTQEGS  64
            ++ +  F  +V+ GS   AA QLQ + S +S+++++LE +L V LL R+TR I LT+ G 
Sbjct  4    LKRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGR  63

Query  65   LFLMRARTILADLSDAEEALLKSDSDTSGLIRIDSATPFVLHVLAPLMQKFMQLYPHIEI  124
            ++    R +L ++ D  E L   ++   G +RI  ++    +VLA L  K ++ YP + +
Sbjct  64   IYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSV  123

Query  125  ELNSNDQVIDLLQHKTDVAIRFGALHDSSLHARLICKSRLYIVASPDYLKKAGTPSHPQE  184
             L +     DL+    DV IR GAL DSSL +R +    + + A+  YL + G P  P +
Sbjct  124  NLVTGIPAPDLIADGLDVVIRVGALQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPAD  183

Query  185  LFQHQLVGFSKPVYLNTWPLKIEDEYITVHPQ------------IKASSGETVRQLTLRG  232
            L  H  + +S         ++ ++E+  + P+            +       VR LT  G
Sbjct  184  LSSHSWLEYS---------VRPDNEFELIAPEGISTRLIPQGRFVTNDPMTLVRWLT-AG  233

Query  233  HGIARLSEYEIWQDLQAGSLIALFEDQIEIQLQHIHAVYYQQKHLPKRVRLFIDFLAD  290
             GIA +    +  ++  G L  L   + +   + ++A+Y ++  LP +V++ I+ L D
Sbjct  234  AGIAYVPLMWVINEINRGELEILL-PRYQSDPRPVYALYTEKDKLPLKVQVVINSLTD  290


>P77333 HTH-type transcriptional regulator PgrR [Escherichia coli 
(strain K12)]
Length=299

 Score = 112 bits (281),  Expect = 1e-32
 Identities = 77/292 (26%), Positives = 138/292 (47%), Gaps = 6/292 (2%)

Query  2    KSTVEELIAFITIVDTGSIVGAAEQLQQTPSGVSRSLNRLEKKLNVTLLERTTRKIKLTQ  61
            +  + +L+AF+ + +  S   AA +L    S +S+ + R+E++L + LL RTTR +  T+
Sbjct  3    REEIADLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTE  62

Query  62   EGSLFLMRARTILADLSDAEEALLKSDSDTSGLIRIDSATPFVLHVLAPLMQKFMQLYPH  121
             G   L     +L D+  A  +L    +  SG IRI +       +L P M+ F++ +P 
Sbjct  63   AGEHLLSVLGPMLHDIDSAMASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPE  122

Query  122  IEIELNSNDQVIDLLQHKTDVAIRFGALHDSSLHA-RLICKSRLYIVASPDYLKKAGTPS  180
            I+I+L  +  + D++  + D  +R G   D  + A R+     + IV SPDY  +   P+
Sbjct  123  IDIQLTIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPT  182

Query  181  HPQELFQHQLVGFSKPV--YLNTWPL--KIEDEYITVHPQIKASSGETVRQLTLRGHGIA  236
               +L  HQ +    P     N W L     +  + +  Q+  ++ + +    + GHG+A
Sbjct  183  SVSQLIDHQAINLYLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLA  242

Query  237  RLSEYEIWQDLQAGSLIALFEDQIEIQLQHIHAVYYQQKHLPKRVRLFIDFL  288
             L   ++ + ++   LI +  D+    L   H  Y  ++H      LFID L
Sbjct  243  YLPYDQVERAIKEKKLIRVL-DKFTPDLPGYHLYYPHRRHAGSAFSLFIDRL  293


>Q01610 Putative transcriptional regulator [Pseudomonas aeruginosa 
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 
/ LMG 12228 / 1C / PRS 101 / PAO1)]
Length=306

 Score = 94.4 bits (233),  Expect = 1e-25
 Identities = 68/263 (26%), Positives = 117/263 (44%), Gaps = 5/263 (2%)

Query  1    VKSTVEELIAFITIVDTGSIVGAAEQLQQTPSGVSRSLNRLEKKLNVTLLERTTRKIKLT  60
            +K  + +L++F+ +   G+   AA QL  T S +S+S++ LE +L + LL RTTR +  T
Sbjct  2    IKRNLNDLLSFVAVAREGTFTRAAAQLGVTQSALSQSISGLEARLQIRLLTRTTRSVSPT  61

Query  61   QEGSLFLMRARTILADLSDAEEALLKSDSDTSGLIRIDSATPFVLHVLAPLMQKFMQLYP  120
              G   L        ++    + L       SG +RI         +L P +   +  YP
Sbjct  62   AAGERLLNAIGNRFDEIEAELDELSALRDKPSGTVRITCGDHIQRTLLLPRLTPLLLEYP  121

Query  121  HIEIELNSNDQVIDLLQHKTDVAIRFGALHDSSLHARLICKS-RLYIVASPDYLKKAGTP  179
             I++E + N    D++  + D  +R G   D  + A  I    R+ +VA+P Y      P
Sbjct  122  DIKVEFDINYGFRDIVADRFDAGVRLGDTIDKDMIAVPIGPPVRMAVVAAPAYFAAHPKP  181

Query  180  SHPQELFQHQLVG--FSKPVYLNTWPLKIEDEYITVH--PQIKASSGETVRQLTLRGHGI  235
              P++L  H  +         L  W  + +D ++ V    Q+  ++   +    L G GI
Sbjct  182  RSPRDLVDHNCINMRMQSGGGLYAWDFQRKDRHVNVRVDGQLIFNTSPNIVDAALAGLGI  241

Query  236  ARLSEYEIWQDLQAGSLIALFED  258
            A L E E    ++ G L+ + E+
Sbjct  242  AWLPEEEFAPHIEEGRLLRVLEN  264


>P37459 Probable HTH-type transcriptional regulator SinR [Salmonella 
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)]
Length=315

 Score = 84.0 bits (206),  Expect = 7e-22
 Identities = 72/294 (24%), Positives = 131/294 (45%), Gaps = 8/294 (3%)

Query  5    VEELIAFITIVDTGSIVGAAEQLQQTPSGVSRSLNRLEKKLNVTLLERTTRKIKLTQEGS  64
            + + + FI + + G++  AA +L  + S VS+SL+RLE  + VTLL R +  ++LT  G 
Sbjct  10   MRDWMIFIKVAEVGNLSRAARELDISISAVSKSLSRLENSIEVTLLRRDSHHLELTGAGQ  69

Query  65   LFLMRARTILADLSDAEEALLKSDSDTSGLIRIDSATPFVLHVLA-PLMQKFMQLYPHIE  123
                  + I +      + L   D    G I+  SA   V   LA   + +F   YP  +
Sbjct  70   TAYASMKRITSSFQSLLDELRNPDKIIRGSIKF-SAPAIVCEFLANKWIWEFTASYPDTK  128

Query  124  IELNSNDQ--VIDLLQHKTDVAIRFGALHDSSLHARLICKSRLYIVASPDYLKKAGTPSH  181
            I L+S ++           ++  + G +    L  R I   +L + ASP Y++K G  SH
Sbjct  129  IYLDSRERSDFFSKSLEFDELVFKSGIIESEDLVYRKISPLKLVLCASPKYIRKYGRISH  188

Query  182  PQELFQHQLVGFSKPVYLNTWPLKIEDEYIT----VHPQIKASSGETVRQLTLRGHGIAR  237
            P +L  H +VG           L  +DE  T    V+  + +++  +V  L L G GI  
Sbjct  189  PGDLENHIIVGLHNHGLSGPLTLFRQDESYTISGAVNVHLSSNNLLSVLNLVLEGKGINL  248

Query  238  LSEYEIWQDLQAGSLIALFEDQIEIQLQHIHAVYYQQKHLPKRVRLFIDFLADE  291
            ++   +       + + +   +  +    I+ V+  +++     + F+ F+ D+
Sbjct  249  MTPAWLATKYLKNNELEIILPEWRVPDLPIYLVWRHRQYYSPLFQRFLSFIEDK  302



Lambda      K        H        a         alpha
   0.322    0.136    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1141337


  Database: d25686e84c952253d4ca883b6a391424.SwissProt.fasta
    Posted date:  May 20, 2024  2:48 PM
  Number of letters in database: 5,223
  Number of sequences in database:  17



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40