BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: fb1fd928c634e4317b38ed788374bc30.SwissProt.fasta
18 sequences; 13,362 total letters
Query= ACIAD3594
Length=677
Score E
Sequences producing significant alignments: (Bits) Value
Q9I310 Uncharacterized signaling protein PA1727 [Pseudomonas aeru... 324 2e-104
Q9ABX9 Uncharacterized signaling protein CC_0091 [Caulobacter vib... 285 2e-88
P55552 Uncharacterized protein y4lL [Sinorhizobium fredii (strain... 277 3e-85
P77334 Cyclic di-GMP phosphodiesterase PdeR [Escherichia coli (st... 273 3e-85
O34311 Signaling protein YkoW [Bacillus subtilis (strain 168)] 276 4e-85
Q9HYT3 Uncharacterized signaling protein PA3311 [Pseudomonas aeru... 272 7e-84
P74101 Uncharacterized protein sll1895 [Synechocystis sp. (strain... 270 9e-84
Q55434 Phytochrome-like protein cph2 [Synechocystis sp. (strain P... 255 1e-75
P64826 Uncharacterized protein Mb1389c [Mycobacterium bovis (stra... 244 1e-74
P9WM13 Uncharacterized protein Rv1354c [Mycobacterium tuberculosi... 244 1e-74
P9WM12 Uncharacterized protein MT1397 [Mycobacterium tuberculosis... 244 1e-74
P76129 Oxygen sensor protein DosP [Escherichia coli (strain K12)] 219 3e-64
Q8EJM6 Cyclic di-GMP phosphodiesterase PdeB [Shewanella oneidensi... 196 6e-56
Q9KU26 Biofilm architecture maintenance protein MbaA [Vibrio chol... 192 6e-55
Q04855 Uncharacterized protein AZC_3085 [Azorhizobium caulinodans... 166 2e-46
P23842 Probable cyclic di-GMP phosphodiesterase PdeA [Escherichia... 133 2e-35
P32701 Probable cyclic di-GMP phosphodiesterase PdeC [Escherichia... 131 3e-35
P76446 Probable cyclic di-GMP phosphodiesterase PdeN [Escherichia... 129 2e-34
>Q9I310 Uncharacterized signaling protein PA1727 [Pseudomonas
aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM
14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=685
Score = 324 bits (831), Expect = 2e-104
Identities = 187/452 (41%), Positives = 264/452 (58%), Gaps = 10/452 (2%)
Query 228 LLKNYISIRTDI--TQLKSSEDHAKYMALYDELTGLPNRRYVKDRLKKVIELSKESQHHS 285
+L + + RT + T L + +AL+D LT LPNR + DRL++ I+ +
Sbjct 236 VLDSRLEARTSVLATSLARANRELIQLALHDNLTKLPNRMLLDDRLEQAIQQAIRDDRRF 295
Query 286 AILMMDLDNFKTVNDTLGHDYGDNLLKMVANRVKKCVRETETIARLGGDELLIILSNLSE 345
A+L MDLD FK VND GH GD LL VA R++ VR +TIARLGGDE ++++
Sbjct 296 AVLFMDLDGFKAVNDAYGHHLGDLLLIEVAERIRANVRAQDTIARLGGDEFVLLI----- 350
Query 346 NEEIAQAQAQAIAERISNSIYQPFNLENQVIQTSVSIGIFVFNDASIPQNELLKYADMAL 405
E A A +AE++ I QP+ + ++ S SIGI ++ ++EL+ AD A+
Sbjct 351 -EAREPADAATLAEKLVKRISQPYQISRHEVRISASIGIALYPGDGQTRHELMINADAAM 409
Query 406 YQAKANGKNCICTFDPLMEQNVISRASLLSDLRQALIRDEFELYYQP-IVDQHKKIIGYE 464
Y AK G+N C F+ M N + LL DLRQAL R + L+YQP ++ + +IG E
Sbjct 410 YHAKDQGRNGYCFFESSMNANAQEQLQLLHDLRQALERRQLVLHYQPKVLAPNGPMIGVE 469
Query 465 ALLRWIHPVRGLILPGEFIEQAEKSDLIHLIGNRVLMMACQQLYQWSQNTDSAHWTLSVN 524
ALLRW HP GLI PG+F+ AEK+ LI IG VL AC+Q+ W A W ++VN
Sbjct 470 ALLRWEHPQHGLITPGQFLPLAEKTGLIVQIGEWVLDEACRQMRLWLDG-GHADWNIAVN 528
Query 525 ISVQQFRKSDFEENIIQIIQDSKANPYRLRLELTESMFYTDMQSSIEKMKKLIEIGVRFS 584
+S QF + +++ + P L LE+TES D +S+ +++L +GV S
Sbjct 529 LSALQFAHAGLVDSVRNALLRHSLEPSHLILEVTESTAMRDADASLVILEQLSAMGVGIS 588
Query 585 MDDFGTGYSSLNYLKLLPLDQLKIDRSFVKNMVDNSRDIAIVNTIINLAHILDLNVVAEG 644
+DDFGTGYSSL YLK LP +LKIDR F+ + +S D AIV+ I+ L L+L +VAEG
Sbjct 589 IDDFGTGYSSLLYLKRLPASELKIDRGFINELAHDSDDAAIVSAIVALGRTLNLKIVAEG 648
Query 645 VETEEQFICLTQNQCFTFQGYLFGRPLPIDSI 676
VETE Q LT+ C + QG+L GRP+P + +
Sbjct 649 VETEAQQEFLTRLGCNSLQGFLLGRPMPAEQL 680
>Q9ABX9 Uncharacterized signaling protein CC_0091 [Caulobacter
vibrioides (strain ATCC 19089 / CB15)]
Length=809
Score = 285 bits (729), Expect = 2e-88
Identities = 159/440 (36%), Positives = 254/440 (58%), Gaps = 10/440 (2%)
Query 238 DITQLKSSEDHAKYMALYDELTGLPNRRYVKDRLKKVIELSKESQHHSAILMMDLDNFKT 297
D+ + +++E+ +Y+A +D LTGL NR ++ RL I+ + S A++ +DLD+FK
Sbjct 357 DLRERRAAEEKIRYLAEHDGLTGLLNRNSLQMRLAAAIDRVEASGESLAVICIDLDHFKE 416
Query 298 VNDTLGHDYGDNLLKMVANRVKKCVRETETIARLGGDELLIILSNLSENEEIAQAQAQAI 357
ND GH GD LL A R++ V+ ARLGGDE +++ ++ ++ A A +
Sbjct 417 ANDQHGHLAGDALLVETARRLQSAVQAPSFAARLGGDEFIVV--QIAGGDQ--PAVAAEL 472
Query 358 AERISNSIYQPFNLENQVIQTSVSIGIFVFNDASIPQNELLKYADMALYQAKANGKNCIC 417
A R+ + P + Q + S+G+ ++ D L+ ADMALY+AK +G+
Sbjct 473 AGRLIEMLAAPVPFDGQELAMGSSLGVSLYPDDGRTAEALMANADMALYRAKESGRGVYR 532
Query 418 TFDPLMEQNVISRASLLSDLRQALIRDEFELYYQPIVDQHK-KIIGYEALLRWIHPVRGL 476
F M+ + R +L DLRQ + +E ++YQP+ ++ G+EAL+RW HP RG+
Sbjct 533 FFKREMDDTIRERRNLARDLRQGIADNELIVHYQPLARAADGEVCGFEALVRWKHPTRGM 592
Query 477 ILPGEFIEQAEKSDLIHLIGNRVLMMACQQLYQWSQNTDSAHWTLSVNISVQQFRKSDFE 536
I P +FI AE++ LI +G+ VL AC W + ++VN+S Q
Sbjct 593 IPPLDFIPVAEENGLIEALGDWVLRRACADAAAWEKPL-----RIAVNLSPIQLHNPALP 647
Query 537 ENIIQIIQDSKANPYRLRLELTESMFYTDMQSSIEKMKKLIEIGVRFSMDDFGTGYSSLN 596
+ +++ + +P RL LE+TES + D Q +++ +++L +GVR +MDDFGTG+SSL+
Sbjct 648 TLVHEVLITTGLSPSRLELEITESALFKDYQRALDNLRRLKALGVRIAMDDFGTGFSSLS 707
Query 597 YLKLLPLDQLKIDRSFVKNMVDNSRDIAIVNTIINLAHILDLNVVAEGVETEEQFICLTQ 656
L+ P D++KID+SFV+N+ + R AIV ++ L L++ VVAEGVETEEQ + L
Sbjct 708 TLQSFPFDKIKIDKSFVENIHRHDRATAIVRAVLGLGRSLEIPVVAEGVETEEQILFLRG 767
Query 657 NQCFTFQGYLFGRPLPIDSI 676
C QGY GRP P+D++
Sbjct 768 EDCAELQGYAIGRPAPVDAL 787
>P55552 Uncharacterized protein y4lL [Sinorhizobium fredii (strain
NBRC 101917 / NGR234)]
Length=827
Score = 277 bits (708), Expect = 3e-85
Identities = 153/467 (33%), Positives = 264/467 (57%), Gaps = 19/467 (4%)
Query 214 WVDTTIVPLKDNDGLLKNYISIRTDITQLKSSEDHA-------KYMALYDELTGLPNRRY 266
WV P +DG ++ I DIT+ +++E +MA +D LTGLPNR++
Sbjct 353 WVIDIGQPRFASDGTFLGFVGIALDITERRNAEQERLLAQKQIHHMARHDALTGLPNRQF 412
Query 267 VKDRLKKVIELSKESQHHSAILMMDLDNFKTVNDTLGHDYGDNLLKMVANRVKKCVRETE 326
+++ +++ + S AIL +DLD FK +ND G GD LL+ V R++ +++++
Sbjct 413 LREEFERLSDHIAPSTR-LAILCLDLDGFKAINDAYGRATGDLLLRHVTERLRNFLKQSD 471
Query 327 TIARLGGDELLIILSNLSENEEIAQAQAQAIAERISNSIYQPFNLENQVIQTSVSIGIFV 386
+ RL GDE +++ ++ N A+A+ +A+++ + I P+ L + V +G+
Sbjct 472 ILCRLSGDEFVVLRVGINSN-----AEARLLAQQLIDVIEAPYELAGTHVDLQVVVGLAA 526
Query 387 FNDASIPQNELLKYADMALYQAKANGKNCICTFDPLMEQNVISRASLLSDLRQALIRDEF 446
+ + +EL+K AD+AL +AK G I ++P M+ ++ +R + LR AL + E
Sbjct 527 ASKSDQSLDELIKTADIALERAKTGGGGTIVQYEPKMDADLRARQRMKVSLRHALAKGEL 586
Query 447 ELYYQPIVDQHK-KIIGYEALLRWIHPVRGLILPGEFIEQAEKSDLIHLIGNRVLMMACQ 505
E+ YQP+ + +I +EAL RW HP RG + P EFI AE++ LI +G +L AC
Sbjct 587 EVRYQPLANLRTGQITTFEALARWPHPERGQVSPAEFIAVAEETGLIGPLGEWILRQACT 646
Query 506 QLYQWSQNTDSAHWTLSVNISVQQFRKSDFEENIIQIIQDSKANPYRLRLELTESMFYTD 565
+ +W + +++VN+S QFR + ++D+ + RL+LE+TES+ +
Sbjct 647 EAVKWPP-----YVSVAVNLSPLQFRNQRLASTVRNSLEDTGLDASRLQLEITESVLLEE 701
Query 566 MQSSIEKMKKLIEIGVRFSMDDFGTGYSSLNYLKLLPLDQLKIDRSFVKNMVDNSRDIAI 625
S+++ +K++ ++GV ++DDFGTGYSSL+YL+ P D++K+DRSF+ ++ + +AI
Sbjct 702 CDSNLQTLKEIRQLGVIVAIDDFGTGYSSLSYLRTFPFDKIKVDRSFIADLPKSKESLAI 761
Query 626 VNTIINLAHILDLNVVAEGVETEEQFICLTQNQCFTFQGYLFGRPLP 672
V + + L + EGVE ++Q + QGYLFG PLP
Sbjct 762 VRAVAAIGRSLGIITTVEGVERQDQLDTIKAEGFDEAQGYLFGGPLP 808
>P77334 Cyclic di-GMP phosphodiesterase PdeR [Escherichia coli
(strain K12)]
Length=661
Score = 273 bits (698), Expect = 3e-85
Identities = 171/542 (32%), Positives = 293/542 (54%), Gaps = 19/542 (4%)
Query 136 DAHSIVAITDNRGVITHVNEKFCDISQYEYYELVG-TTHKIINSGFHPRSFFKQMWKTIA 194
+AHS + I D+RG I N D + + ++++G + K+ S + +
Sbjct 119 EAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQSVFKLFMSRREAAASRRNNRVFFR 178
Query 195 QGNIWKGEICNRTKQG-KLYWVDTTIVPLKDNDGLLKNYISI---RTDITQLKSSEDHAK 250
GN ++ E+ T +G +L+ V + G KN I + TDIT+ + +++ +
Sbjct 179 SGNAYEVELWIPTCKGQRLFLFRNKFV----HSGSGKNEIFLICSGTDITEERRAQERLR 234
Query 251 YMALYDELTGLPNRRYVKDRLKKVIELSKESQHHSAILMMDLDNFKTVNDTLGHDYGDNL 310
+A D +TGLPNR ++D + I + ++ ++ +DLDNFK VND GH +GD L
Sbjct 235 ILANTDSITGLPNRNAMQDLIDHAINHADNNK--VGVVYLDLDNFKKVNDAYGHLFGDQL 292
Query 311 LKMVANRVKKCVRETETIARLGGDELLIILSNLSENEEIAQAQAQAIAERISNSIYQPFN 370
L+ V+ + C+ + +AR GGDE L++ SN S Q+ +A+A RI + PF
Sbjct 293 LRDVSLAILSCLEHDQVLARPGGDEFLVLASNTS------QSALEAMASRILTRLRLPFR 346
Query 371 LENQVIQTSVSIGIFVFNDASIPQNELLKYADMALYQAKANGKNCICTFDPLMEQNVISR 430
+ + TS S+GI + + ++++AD A+Y AK G+ C F P M Q V
Sbjct 347 IGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVFTPEMNQRVFEY 406
Query 431 ASLLSDLRQALIRDEFELYYQPIVDQHKKIIGYEALLRWIHPVRGLILPGEFIEQAEKSD 490
L ++LR+AL D+ ++YQP + ++ EAL+RW P RGLI P +FI AE+S
Sbjct 407 LWLDTNLRKALENDQLVIHYQPKITWRGEVRSLEALVRWQSPERGLIPPLDFISYAEESG 466
Query 491 LIHLIGNRVLMMACQQLYQWSQNTDSAHWTLSVNISVQQFRKSDFEENIIQIIQDSKANP 550
LI +G V++ +Q+ +W + ++VNIS +Q + Q++Q+
Sbjct 467 LIVPLGRWVILDVVRQVAKWRDK--GINLRVAVNISARQLADQTIFTALKQVLQELNFEY 524
Query 551 YRLRLELTESMFYTDMQSSIEKMKKLIEIGVRFSMDDFGTGYSSLNYLKLLPLDQLKIDR 610
+ +ELTES + + ++ +++ ++G + +DDFGTGYSSL+ L P+D +K+D+
Sbjct 525 CPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSLSQLARFPIDAIKLDQ 584
Query 611 SFVKNMVDNSRDIAIVNTIINLAHILDLNVVAEGVETEEQFICLTQNQCFTFQGYLFGRP 670
FV+++ ++V I+ +A L+L V+AEGVE+ ++ LT+N QG+LF +P
Sbjct 585 VFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLTKNGINERQGFLFAKP 644
Query 671 LP 672
+P
Sbjct 645 MP 646
>O34311 Signaling protein YkoW [Bacillus subtilis (strain 168)]
Length=800
Score = 276 bits (706), Expect = 4e-85
Identities = 168/467 (36%), Positives = 258/467 (55%), Gaps = 9/467 (2%)
Query 207 TKQGKLYWVDTTIVPLKDNDGLLKNYISIRTDITQLKSSEDHAKYMALYDELTGLPNRRY 266
T++G+ + ++ T++P++ N L Y+ I D+T+ +E MA YD LT LPNRR+
Sbjct 328 TEKGQFH-LNITLIPVEVNQELDSIYV-ICKDMTKQYKAEKEIHRMAHYDSLTDLPNRRH 385
Query 267 VKDRLKKVIELSKESQHHSAILMMDLDNFKTVNDTLGHDYGDNLLKMVANRVKKCVRETE 326
L KV+ +++ + +DL+ FK +ND LGH+ GD LL+ A R+ V +
Sbjct 386 AISHLTKVLNREHSLHYNTVVFFLDLNRFKVINDALGHNVGDQLLQFAAKRLSSVVPDNG 445
Query 327 TIARLGGDELLIILSNLSENEEIAQAQAQAIAERISNSIYQPFNLENQVIQTSVSIGIFV 386
IARLGGDE +IIL++ + +A +A +I +PF +++ + TSVSIGI +
Sbjct 446 FIARLGGDEFIIILTDANTGT----GEADVLARKIIQKFKKPFKIQDHTLVTSVSIGIAI 501
Query 387 FNDASIPQNELLKYADMALYQAKANGKNCICTFDPLMEQNVISRASLLSDLRQALIRDEF 446
EL+K ADMA+Y AK K+ + + + + LR+A+ D F
Sbjct 502 SPKDGTDGLELMKKADMAMYAAKERNKSKYRYYSFSIGNKETVKLNQEMVLREAIENDRF 561
Query 447 ELYYQPIVDQHK-KIIGYEALLRWIHPVRGLILPGEFIEQAEKSDLIHLIGNRVLMMACQ 505
L+YQP K K+ G EAL+R + P L PGEFI AE++ LI IG ++ AC+
Sbjct 562 VLHYQPQFSVKKQKMTGAEALIRLVTPDGQLRPPGEFIGVAEETGLIIDIGKWIIDEACK 621
Query 506 QLYQWSQNTDSAHWTLSVNISVQQFRKSDFEENIIQIIQDSKANPYRLRLELTESMFYTD 565
Q W ++++NIS +QF+ D I + + P L +E+TESM +
Sbjct 622 QARIWHDK--GYDLSVAINISARQFQSKDLIPLIKDTLNKYQLPPQLLEVEVTESMTMDN 679
Query 566 MQSSIEKMKKLIEIGVRFSMDDFGTGYSSLNYLKLLPLDQLKIDRSFVKNMVDNSRDIAI 625
+ S + + L E+G+R S+DDFGTG+SSL+YLK P+ +LKID+SF+ ++ + + I
Sbjct 680 LNHSKKVLSSLTELGIRISIDDFGTGHSSLSYLKDFPIHRLKIDKSFIDDIQTHPKSEQI 739
Query 626 VNTIINLAHILDLNVVAEGVETEEQFICLTQNQCFTFQGYLFGRPLP 672
II + H L L V+AEGVE Q L + C QG+ F RP+P
Sbjct 740 TGAIIAMGHQLSLQVIAEGVENAAQKQLLFEKGCDHLQGFFFSRPIP 786
>Q9HYT3 Uncharacterized signaling protein PA3311 [Pseudomonas
aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM
14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=783
Score = 272 bits (696), Expect = 7e-84
Identities = 159/449 (35%), Positives = 255/449 (57%), Gaps = 12/449 (3%)
Query 233 ISIRTDITQLKSSEDHA----KYMALYDELTGLPNRRYVKDRLKKVIELSKESQHHSAIL 288
+S + + L + DHA + MA YD LTGL NR + + +E + A++
Sbjct 321 LSENSRVNALLNQLDHAHASLRQMARYDSLTGLQNRTAFNEVFVQHLENCRLRGKGLAVM 380
Query 289 MMDLDNFKTVNDTLGHDYGDNLLKMVANRVKKCVRETETIARLGGDELLIILSNLSENEE 348
+DLD+FK +ND+LGHD GD LLK+V+ R++ +R+++ +AR GDE + L++L+++ E
Sbjct 381 FLDLDHFKRINDSLGHDSGDQLLKIVSERIRSVLRDSDVVARFAGDEFCV-LADLTQDHE 439
Query 349 IAQAQAQAIAERISNSIYQPFNLENQVIQTSVSIGIFVFNDASIPQNELLKYADMALYQA 408
A +++R+ + +P L+ + + + S+G+ ++ + ELLK A +AL+Q+
Sbjct 440 -----AHILSQRLMQKMKEPIALDGRTLVMTASVGVSLYPNDGEQCEELLKNAGLALHQS 494
Query 409 KANGKNCICTFDPLMEQNVISRASLLSDLRQALIRDEFELYYQPIVD-QHKKIIGYEALL 467
KA G+N F + + +LRQAL D+ EL+YQPI+ ++ EAL+
Sbjct 495 KACGRNNAQFFSRQLLVRATQELQMEEELRQALRDDQLELHYQPILALADGEVHQLEALV 554
Query 468 RWIHPVRGLILPGEFIEQAEKSDLIHLIGNRVLMMACQQLYQWSQNTDSAHWTLSVNISV 527
RW HP +GL+ P FI AE + +I + + VL AC+ L ++VN
Sbjct 555 RWRHPTQGLLGPDRFIGLAEANGMIDQLDDWVLRRACRDLRSLHL-AGHERLRVAVNCCA 613
Query 528 QQFRKSDFEENIIQIIQDSKANPYRLRLELTESMFYTDMQSSIEKMKKLIEIGVRFSMDD 587
++ + + ++ + L LE+TE ++ +I +++L E+GV S+DD
Sbjct 614 SNLGRASLVDEVRHALEQAGLAACFLELEVTEDALMYNIDQTIPLLERLRELGVSLSIDD 673
Query 588 FGTGYSSLNYLKLLPLDQLKIDRSFVKNMVDNSRDIAIVNTIINLAHILDLNVVAEGVET 647
FGTGYSSL YL+ LPLD LK+DRSF+ ++ + RD+ I II +A L L VVAEGVET
Sbjct 674 FGTGYSSLAYLRRLPLDALKVDRSFIMDIPASQRDMEIAQAIIAMAQKLHLKVVAEGVET 733
Query 648 EEQFICLTQNQCFTFQGYLFGRPLPIDSI 676
+Q L +N C QGYLF RPLP+ ++
Sbjct 734 PQQLAFLRENHCELVQGYLFSRPLPLAAL 762
>P74101 Uncharacterized protein sll1895 [Synechocystis sp. (strain
PCC 6803 / Kazusa)]
Length=696
Score = 270 bits (690), Expect = 9e-84
Identities = 152/435 (35%), Positives = 235/435 (54%), Gaps = 7/435 (2%)
Query 238 DITQLKSSEDHAKYMALYDELTGLPNRRYVKDRLKKVIELSKESQHHSAILMMDLDNFKT 297
DIT+ K E Y A YD LT LPNR K L KV+ + ++++ ++
Sbjct 248 DITERKVIEQSIHYQAFYDPLTDLPNRFLFKQELGKVLSNVQNQSSVLGLVLLGFRELQS 307
Query 298 VNDTLGHDYGDNLLKMVANRVKKCVRETETIARLGGDELLIILSNLSENEEIAQAQAQAI 357
+ND LGH D +LK++ R+ VR + + R GD ++++ + +EI +
Sbjct 308 LNDLLGHSVADEVLKIITERLSAHVRLEDLLCRWRGDTFILLIQSCRNLDEI-----EVF 362
Query 358 AERISNSIYQPFNLENQVIQTSVSIGIFVFNDASIPQNELLKYADMALYQAKANGKNCIC 417
R+ + +PF + N + GI + + LL +AL + K G C
Sbjct 363 VRRLLAVLKRPFFIANNPLYLQGYAGIACYPNHGDNVEILLNRVGIALNEVKDIGSRQYC 422
Query 418 TFDPLMEQNVISRASLLSDLRQALIRDEFELYYQPIVD-QHKKIIGYEALLRWIHPVRGL 476
++ M + + R L L QAL RDEF LYYQPI+D Q ++ G EAL+RW HP+ GL
Sbjct 423 FYEESMNSDHLERIQLEHALHQALERDEFLLYYQPIIDVQSGRLCGVEALIRWQHPIHGL 482
Query 477 ILPGEFIEQAEKSDLIHLIGNRVLMMACQQLYQWSQNTDSAHWTLSVNISVQQFRKSDFE 536
+ PG FI E + LI +G ++ A Q + W+ D + +++N+S QQF+ D
Sbjct 483 VSPGLFIGLLETTGLIIPVGEWIMRTAFQHFHHWAPAVDD-DFRIAINLSPQQFQAPDLL 541
Query 537 ENIIQIIQDSKANPYRLRLELTESMFYTDMQSSIEKMKKLIEIGVRFSMDDFGTGYSSLN 596
I++I+ +S P+RL +E+TE++ ++ ++ + L G+R SMDDFGTGYSSL+
Sbjct 542 PTILRILAESSLPPHRLEVEITENIVMQNVTATQNLLNALQSHGIRLSMDDFGTGYSSLS 601
Query 597 YLKLLPLDQLKIDRSFVKNMVDNSRDIAIVNTIINLAHILDLNVVAEGVETEEQFICLTQ 656
YLK P + LKIDRSF K+++ +D AI+ ++ L + +LN++AEG+E E Q CL
Sbjct 602 YLKTFPFNTLKIDRSFTKDILHTPKDAAIIQAMLLLGNGFNLNIIAEGIEEEPQARCLYD 661
Query 657 NQCFTFQGYLFGRPL 671
C QGY F PL
Sbjct 662 LGCREMQGYWFSHPL 676
Score = 20.4 bits (41), Expect = 5.6
Identities = 8/15 (53%), Positives = 12/15 (80%), Gaps = 0/15 (0%)
Query 111 LTEQLSIHQQLEKIL 125
+TE+LS H +LE +L
Sbjct 324 ITERLSAHVRLEDLL 338
>Q55434 Phytochrome-like protein cph2 [Synechocystis sp. (strain
PCC 6803 / Kazusa)]
Length=1276
Score = 255 bits (652), Expect = 1e-75
Identities = 154/427 (36%), Positives = 246/427 (58%), Gaps = 11/427 (3%)
Query 255 YDELTGLPNRRYVKDRLKKVIELSKESQHHSAILMMDLDNFKTVNDTLGHDYGDNLLKMV 314
YD LT LPN +L + + +L++ +D FK +N++ GH GD LL+ V
Sbjct 433 YDPLTQLPNWIIFNRQLTLALLDALYEGKMVGVLVIAMDRFKRINESFGHKTGDGLLQEV 492
Query 315 ANRVKKCVRE----TETIARLGGDELLIILSNLSENEEIAQAQAQAIAERISNSIYQPFN 370
A+R+ + + + ++R GD I+L+ +S+N+E+ + ER+ ++ +PF
Sbjct 493 ADRLNQKLSPLAAYSPLLSRWHGDGFTILLTQISDNQEMIP-----LCERLLSTFQEPFF 547
Query 371 LENQVIQTSVSIGIFVFNDASIPQNELLKYADMALYQAKANGKNCICTFDPLMEQNVISR 430
L+ Q I + S+GI LLK+A++AL +AK GKN + P ++ R
Sbjct 548 LQGQPIYLTASMGISTAPYDGETAESLLKFAEIALTRAKCQGKNTYQFYRPQDSAPMLDR 607
Query 431 ASLLSDLRQALIRDEFELYYQPIVDQHK-KIIGYEALLRWIHPVRGLILPGEFIEQAEKS 489
+L SDLRQAL EF LY+QP V K++G EAL+RW HP G + P FI AE+
Sbjct 608 LTLESDLRQALTNQEFVLYFQPQVALDTGKLLGVEALVRWQHPRLGQVAPDVFIPLAEEL 667
Query 490 DLIHLIGNRVLMMACQQLYQWSQNTDSAHWTLSVNISVQQFRKSDFEENIIQIIQDSKAN 549
LI+ +G VL AC + + T ++VNIS +QF+ + ++++ ++ +
Sbjct 668 GLINHLGQWVLETACATHQHFFRET-GRRLRMAVNISARQFQDEKWLNSVLECLKRTGMP 726
Query 550 PYRLRLELTESMFYTDMQSSIEKMKKLIEIGVRFSMDDFGTGYSSLNYLKLLPLDQLKID 609
P L LE+TES+ D++ ++ + +L E GV+ ++DDFGTGYSSL+ LK LP+ +LKID
Sbjct 727 PEDLELEITESLMMEDIKGTVVLLHRLREEGVQVAIDDFGTGYSSLSILKQLPIHRLKID 786
Query 610 RSFVKNMVDNSRDIAIVNTIINLAHILDLNVVAEGVETEEQFICLTQNQCFTFQGYLFGR 669
+SFV ++++ D AI+ +I+LA+ L+L VAEG+E+E Q L + C QGY R
Sbjct 787 KSFVNDLLNEGADTAIIQYVIDLANGLNLETVAEGIESEAQLQRLQKMGCHLGQGYFLTR 846
Query 670 PLPIDSI 676
PLP +++
Sbjct 847 PLPAEAM 853
Score = 82.8 bits (203), Expect = 4e-19
Identities = 68/220 (31%), Positives = 110/220 (50%), Gaps = 7/220 (3%)
Query 197 NIWKGEICNRTKQGKLYWVDTTIVPLKDNDGLLKNYISIRTDITQLKSSEDHAKYMALYD 256
N+W I + K + YW + + L + + I QL+++ + ++ D
Sbjct 1045 NLWGLLIAHECKTPR-YWQEEDLQLLMELATQVAIAIHQGELYEQLETANIRLQQISSLD 1103
Query 257 ELTGLPNRRYVKDRLKKVIELSKESQHHSAILMMDLDNFKTVNDTLGHDYGDNLLKMVAN 316
LT + NR L++ + + + A+L+ D+D FK ND GH GD LK +A+
Sbjct 1104 ALTQVGNRYLFDSTLEREWQRLQRIREPLALLLCDVDFFKGFNDNYGHPAGDRCLKKIAD 1163
Query 317 RVKKCV-RETETIARLGGDELLIILSNLSENEEIAQAQAQAIAERISNSIYQPFNLENQV 375
+ K R T+ +AR GG+E IILS S E A +A+ ++N + P +
Sbjct 1164 AMAKVAKRPTDLVARYGGEEFAIILSETS--LEGAINVTEALQVEVAN-LAIPHTVSG-T 1219
Query 376 IQTSVSIGIFVFN-DASIPQNELLKYADMALYQAKANGKN 414
++SIGI V+ + I N L+K AD+ALY+AKA G+N
Sbjct 1220 GHVTLSIGIAVYTPERHINPNALVKAADLALYEAKAKGRN 1259
Score = 20.4 bits (41), Expect = 5.8
Identities = 7/13 (54%), Positives = 10/13 (77%), Gaps = 0/13 (0%)
Query 182 PRSFFKQMWKTIA 194
PR F +Q W+T+A
Sbjct 164 PRRFTEQEWETMA 176
Score = 19.6 bits (39), Expect = 10.0
Identities = 12/39 (31%), Positives = 18/39 (46%), Gaps = 0/39 (0%)
Query 481 EFIEQAEKSDLIHLIGNRVLMMACQQLYQWSQNTDSAHW 519
E + QA ++D L L + Q YQW+ D +W
Sbjct 227 ETVGQAVEADGAVLYIAPDLTGSVAQHYQWNLRFDWGNW 265
>P64826 Uncharacterized protein Mb1389c [Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97)]
Length=623
Score = 244 bits (622), Expect = 1e-74
Identities = 154/454 (34%), Positives = 240/454 (53%), Gaps = 11/454 (2%)
Query 223 KDNDGLLKNYISIRTDITQLKS---SEDHAKYMALYDELTGLPNRRYVKDRLKKVIELSK 279
K ++ L ++I T Q+++ +E +Y+A +D+LTGL NRR + L + L+
Sbjct 151 KWHEAELNALMTIATLFAQVQARVAAEARLRYLADHDDLTGLHNRRALLQHLDQ--RLAP 208
Query 280 ESQHHSAILMMDLDNFKTVNDTLGHDYGDNLLKMVANRVKKCVRETETIARLGGDELLII 339
A L +DLD K +ND LGH GD + + A R+ + IARLGGDE ++I
Sbjct 209 GQPGPVAALFLDLDRLKAINDYLGHAAGDQFIHVFAQRIGDALVGESLIARLGGDEFVLI 268
Query 340 LSNLSENEEIAQAQAQAIAERISNSIYQPFNLENQVIQTSVSIGIFVFNDASIPQNELLK 399
++ ++ AQ +AER+ + + + +V+ +VSIG+ ++LL+
Sbjct 269 PAS-----PMSADAAQPLAERLRDQLKDHVAIGGEVLTRTVSIGVASGTPGQHTPSDLLR 323
Query 400 YADMALYQAKANGKNCICTFDPLMEQNVISRASLLSDLRQALIRDEFELYYQPIVDQHK- 458
AD A AK G + + F M + R + LR+ + D L Y P VD
Sbjct 324 RADQAALAAKHAGGDSVAIFTADMSVSGELRNDIELHLRRGIESDALRLVYLPEVDLRTG 383
Query 459 KIIGYEALLRWIHPVRGLILPGEFIEQAEKSDLIHLIGNRVLMMACQQLYQWSQNTDSAH 518
I+G EAL+RW HP RGL+ PG FI AE +L + VL AC + +W
Sbjct 384 DIVGTEALVRWQHPTRGLLAPGCFIPVAESINLAGELDRWVLRRACNEFSEWQSAGLGHD 443
Query 519 WTLSVNISVQQFRKSDFEENIIQIIQDSKANPYRLRLELTESMFYTDMQSSIEKMKKLIE 578
L +N+S Q F + + I + + LE+TE++ D+ ++ + +L E
Sbjct 444 ALLRINVSAGQLVTGGFVDFVADTIGQHGLDASSVCLEITENVVVQDLHTARATLARLKE 503
Query 579 IGVRFSMDDFGTGYSSLNYLKLLPLDQLKIDRSFVKNMVDNSRDIAIVNTIINLAHILDL 638
+GV ++DDFGTGYS+++ L+ LP+D LKID++FV+ + N+ D+ IV I+ LA L
Sbjct 504 VGVHIAIDDFGTGYSAISLLQTLPIDTLKIDKTFVRQLGTNTSDLVIVRGIMTLAEGFQL 563
Query 639 NVVAEGVETEEQFICLTQNQCFTFQGYLFGRPLP 672
+VVAEGVETE L +C+ QG+LF RP+P
Sbjct 564 DVVAEGVETEAAARILLDQRCYRAQGFLFSRPVP 597
>P9WM13 Uncharacterized protein Rv1354c [Mycobacterium tuberculosis
(strain ATCC 25618 / H37Rv)]
Length=623
Score = 244 bits (622), Expect = 1e-74
Identities = 154/454 (34%), Positives = 240/454 (53%), Gaps = 11/454 (2%)
Query 223 KDNDGLLKNYISIRTDITQLKS---SEDHAKYMALYDELTGLPNRRYVKDRLKKVIELSK 279
K ++ L ++I T Q+++ +E +Y+A +D+LTGL NRR + L + L+
Sbjct 151 KWHEAELNALMTIATLFAQVQARVAAEARLRYLADHDDLTGLHNRRALLQHLDQ--RLAP 208
Query 280 ESQHHSAILMMDLDNFKTVNDTLGHDYGDNLLKMVANRVKKCVRETETIARLGGDELLII 339
A L +DLD K +ND LGH GD + + A R+ + IARLGGDE ++I
Sbjct 209 GQPGPVAALFLDLDRLKAINDYLGHAAGDQFIHVFAQRIGDALVGESLIARLGGDEFVLI 268
Query 340 LSNLSENEEIAQAQAQAIAERISNSIYQPFNLENQVIQTSVSIGIFVFNDASIPQNELLK 399
++ ++ AQ +AER+ + + + +V+ +VSIG+ ++LL+
Sbjct 269 PAS-----PMSADAAQPLAERLRDQLKDHVAIGGEVLTRTVSIGVASGTPGQHTPSDLLR 323
Query 400 YADMALYQAKANGKNCICTFDPLMEQNVISRASLLSDLRQALIRDEFELYYQPIVDQHK- 458
AD A AK G + + F M + R + LR+ + D L Y P VD
Sbjct 324 RADQAALAAKHAGGDSVAIFTADMSVSGELRNDIELHLRRGIESDALRLVYLPEVDLRTG 383
Query 459 KIIGYEALLRWIHPVRGLILPGEFIEQAEKSDLIHLIGNRVLMMACQQLYQWSQNTDSAH 518
I+G EAL+RW HP RGL+ PG FI AE +L + VL AC + +W
Sbjct 384 DIVGTEALVRWQHPTRGLLAPGCFIPVAESINLAGELDRWVLRRACNEFSEWQSAGLGHD 443
Query 519 WTLSVNISVQQFRKSDFEENIIQIIQDSKANPYRLRLELTESMFYTDMQSSIEKMKKLIE 578
L +N+S Q F + + I + + LE+TE++ D+ ++ + +L E
Sbjct 444 ALLRINVSAGQLVTGGFVDFVADTIGQHGLDASSVCLEITENVVVQDLHTARATLARLKE 503
Query 579 IGVRFSMDDFGTGYSSLNYLKLLPLDQLKIDRSFVKNMVDNSRDIAIVNTIINLAHILDL 638
+GV ++DDFGTGYS+++ L+ LP+D LKID++FV+ + N+ D+ IV I+ LA L
Sbjct 504 VGVHIAIDDFGTGYSAISLLQTLPIDTLKIDKTFVRQLGTNTSDLVIVRGIMTLAEGFQL 563
Query 639 NVVAEGVETEEQFICLTQNQCFTFQGYLFGRPLP 672
+VVAEGVETE L +C+ QG+LF RP+P
Sbjct 564 DVVAEGVETEAAARILLDQRCYRAQGFLFSRPVP 597
>P9WM12 Uncharacterized protein MT1397 [Mycobacterium tuberculosis
(strain CDC 1551 / Oshkosh)]
Length=623
Score = 244 bits (622), Expect = 1e-74
Identities = 154/454 (34%), Positives = 240/454 (53%), Gaps = 11/454 (2%)
Query 223 KDNDGLLKNYISIRTDITQLKS---SEDHAKYMALYDELTGLPNRRYVKDRLKKVIELSK 279
K ++ L ++I T Q+++ +E +Y+A +D+LTGL NRR + L + L+
Sbjct 151 KWHEAELNALMTIATLFAQVQARVAAEARLRYLADHDDLTGLHNRRALLQHLDQ--RLAP 208
Query 280 ESQHHSAILMMDLDNFKTVNDTLGHDYGDNLLKMVANRVKKCVRETETIARLGGDELLII 339
A L +DLD K +ND LGH GD + + A R+ + IARLGGDE ++I
Sbjct 209 GQPGPVAALFLDLDRLKAINDYLGHAAGDQFIHVFAQRIGDALVGESLIARLGGDEFVLI 268
Query 340 LSNLSENEEIAQAQAQAIAERISNSIYQPFNLENQVIQTSVSIGIFVFNDASIPQNELLK 399
++ ++ AQ +AER+ + + + +V+ +VSIG+ ++LL+
Sbjct 269 PAS-----PMSADAAQPLAERLRDQLKDHVAIGGEVLTRTVSIGVASGTPGQHTPSDLLR 323
Query 400 YADMALYQAKANGKNCICTFDPLMEQNVISRASLLSDLRQALIRDEFELYYQPIVDQHK- 458
AD A AK G + + F M + R + LR+ + D L Y P VD
Sbjct 324 RADQAALAAKHAGGDSVAIFTADMSVSGELRNDIELHLRRGIESDALRLVYLPEVDLRTG 383
Query 459 KIIGYEALLRWIHPVRGLILPGEFIEQAEKSDLIHLIGNRVLMMACQQLYQWSQNTDSAH 518
I+G EAL+RW HP RGL+ PG FI AE +L + VL AC + +W
Sbjct 384 DIVGTEALVRWQHPTRGLLAPGCFIPVAESINLAGELDRWVLRRACNEFSEWQSAGLGHD 443
Query 519 WTLSVNISVQQFRKSDFEENIIQIIQDSKANPYRLRLELTESMFYTDMQSSIEKMKKLIE 578
L +N+S Q F + + I + + LE+TE++ D+ ++ + +L E
Sbjct 444 ALLRINVSAGQLVTGGFVDFVADTIGQHGLDASSVCLEITENVVVQDLHTARATLARLKE 503
Query 579 IGVRFSMDDFGTGYSSLNYLKLLPLDQLKIDRSFVKNMVDNSRDIAIVNTIINLAHILDL 638
+GV ++DDFGTGYS+++ L+ LP+D LKID++FV+ + N+ D+ IV I+ LA L
Sbjct 504 VGVHIAIDDFGTGYSAISLLQTLPIDTLKIDKTFVRQLGTNTSDLVIVRGIMTLAEGFQL 563
Query 639 NVVAEGVETEEQFICLTQNQCFTFQGYLFGRPLP 672
+VVAEGVETE L +C+ QG+LF RP+P
Sbjct 564 DVVAEGVETEAAARILLDQRCYRAQGFLFSRPVP 597
>P76129 Oxygen sensor protein DosP [Escherichia coli (strain K12)]
Length=799
Score = 219 bits (557), Expect = 3e-64
Identities = 140/436 (32%), Positives = 236/436 (54%), Gaps = 16/436 (4%)
Query 243 KSSEDHAKYMALYDELTGLPNRRYVKDRLKKVIELSKESQHHSAILMMDLDNFKTVNDTL 302
+ S H + + +D +TGLPNR + + L +++ + + ++ +D+ + V D+L
Sbjct 366 EKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDKAVSP----VVYLIGVDHIQDVIDSL 421
Query 303 GHDYGDNLLKMVANRVKKCVRETETIARLGGDELLIILSNLSENEEIAQAQAQAIAERIS 362
G+ + D L V NR ++ ++ + + R+ G + +++ S ++ I Q IA+ +
Sbjct 422 GYAWADQALLEVVNRFREKLKPDQYLCRIEGTQFVLV-SLENDVSNITQ-----IADELR 475
Query 363 NSIYQPFNLENQVIQTSVSIGIFVFNDASIPQNELLKYADMALYQAKANGKNCICTFDPL 422
N + +P ++++ ++SIGI D ++ LL A A+ + NG N F P
Sbjct 476 NVVSKPIMIDDKPFPLTLSIGISY--DLGKNRDYLLSTAHNAMDYIRKNGGNGWQFFSPA 533
Query 423 MEQNVISRASLLSDLRQALIRDEFELYYQP-IVDQHKKIIGYEALLRWIHPVRGLILPGE 481
M + V R L + L++A+ ++ +L YQP I + ++ G EAL RW P+ G + P
Sbjct 534 MNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGELYGIEALARWHDPLHGHVPPSR 593
Query 482 FIEQAEKSDLIHLIGNRVLMMACQQLYQW-SQNTDSAHWTLSVNISVQQFRKSDFEENII 540
FI AE+ I IG V+ AC+QL +W SQN LSVN+S FR + +
Sbjct 594 FIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIP--ALSVNLSALHFRSNQLPNQVS 651
Query 541 QIIQDSKANPYRLRLELTESMFYTDMQSSIEKMKKLIEIGVRFSMDDFGTGYSSLNYLKL 600
+ + ++L +E+TESM ++++ L ++GV S+DDFGTG+S L+ L
Sbjct 652 DAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMGVGLSVDDFGTGFSGLSRLVS 711
Query 601 LPLDQLKIDRSFVKNMVDNSRDIAIVNTIINLAHILDLNVVAEGVETEEQFICLTQNQCF 660
LP+ ++KID+SFV + R +A++ I ++ L+L VVAEGVET+EQF L + C
Sbjct 712 LPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVVAEGVETKEQFEMLRKIHCR 771
Query 661 TFQGYLFGRPLPIDSI 676
QGY F RPLP + I
Sbjct 772 VIQGYFFSRPLPAEEI 787
Score = 27.3 bits (59), Expect = 0.042
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 4/53 (8%)
Query 189 MWKTIAQGNIWKGEICNRTKQGKLYWVDTTIVPLKDNDGLLKNYISIRTDITQ 241
+WKT + E T+ G+ W+ +I P+ D L+N + +DIT+
Sbjct 202 LWKTARD----QDEFLLLTRTGEKIWIKASISPVYDVLAHLQNLVMTFSDITE 250
>Q8EJM6 Cyclic di-GMP phosphodiesterase PdeB [Shewanella oneidensis
(strain MR-1)]
Length=856
Score = 196 bits (497), Expect = 6e-56
Identities = 142/468 (30%), Positives = 238/468 (51%), Gaps = 21/468 (4%)
Query 215 VDTTIVPLKDNDGLLKNYISIRTDITQLKSSEDHAKYMALYDELTGLPNRRYVKDRLKKV 274
++ +I + +++ + + + DITQ + + + A +D +TGL NR+ +++L +
Sbjct 390 IERSISNVLNHEKEIVGTVVVLRDITQEELLKHQLQKRANFDGITGLLNRQAFEEQLPEF 449
Query 275 IELSKESQHHSAILMMDLDNFKTVNDTLGHDYGDNLLKMVANRVKKCVRETETIARLGGD 334
++ A+ +DL+ FK +ND+ GH GD +L MVA ++ C+ E +AR+GGD
Sbjct 450 ASQARSL----AVCYLDLEQFKLINDSCGHTAGDRMLAMVARAIQSCLGPQELLARIGGD 505
Query 335 ELLIILSNLSENEEIAQAQAQAIAERISNSIYQPFNLENQVIQTSVSIGIFVFNDASIPQ 394
E +++ + A A AQ + + I+ Q + +N + +SIG+ I
Sbjct 506 EFGLVIC-----DRTALAVAQLLKQIIAQVSLQVLHDKNCNYKVGLSIGVAFGRAPYINA 560
Query 395 NELLKYADMALYQAKANGKNCICTFDPLMEQNVISRASLLSDLR--QALIRDEFELYYQP 452
ELLK AD+A AKA G N I +D ++ R + +R QA+ +E LYYQP
Sbjct 561 QELLKDADIACIAAKAKGTNQIHIYDDKDKELTYQRNAPKWAVRIAQAIEENELLLYYQP 620
Query 453 I--VDQHKKIIGYEALLRWIHPVRGLILPGEFIEQAEKSDLIHLIGNRVLMMACQQLYQW 510
I + K E LLR P ++ P +FI AE+ L+ I V+ A + W
Sbjct 621 IRGLGASSKRQRMEVLLRIQEPCGRILAPAQFIAAAERFKLMPEIDKEVIRKA----FLW 676
Query 511 SQNTDSAHWT---LSVNISVQQFRKSDFEENIIQIIQDSKANPYRLRLELTESMFYTDMQ 567
+ +S W +S+N+S E I + Q + E+TE+ +
Sbjct 677 L-SLNSQLWQDHCISINLSGNSLGAEGMVEYIAKQQQIFDIPSQCVCFEITETTAIQNRH 735
Query 568 SSIEKMKKLIEIGVRFSMDDFGTGYSSLNYLKLLPLDQLKIDRSFVKNMVDNSRDIAIVN 627
+E +++L ++G F++DDFG+G++S YL+ LP+D +KID FVKN+ N++D AIV
Sbjct 736 RGMEMLRQLRKLGFSFALDDFGSGFASYGYLRELPVDYVKIDGCFVKNLAVNAKDYAIVK 795
Query 628 TIINLAHILDLNVVAEGVETEEQFICLTQNQCFTFQGYLFGRPLPIDS 675
+I ++ ++ + VAE VE +E L QGY GRP P+ S
Sbjct 796 SIQDVCRVMGIETVAEFVENQEIIDRLQTIGINYAQGYAIGRPQPLAS 843
Score = 19.6 bits (39), Expect = 9.8
Identities = 19/80 (24%), Positives = 31/80 (39%), Gaps = 24/80 (30%)
Query 321 CVRETETIARLGGDELLIILSNLSENEEIAQAQAQAIAERISNSIYQPFNLENQVIQTSV 380
C+R ET+ ++ +LL + + I SI N E +++ T V
Sbjct 367 CIRLGETMPQVAKIKLLTTMPRI-----------------IERSISNVLNHEKEIVGTVV 409
Query 381 SIGIFVFNDASIPQNELLKY 400
+ I Q ELLK+
Sbjct 410 VL-------RDITQEELLKH 422
>Q9KU26 Biofilm architecture maintenance protein MbaA [Vibrio
cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)]
Length=791
Score = 192 bits (488), Expect = 6e-55
Identities = 137/445 (31%), Positives = 218/445 (49%), Gaps = 17/445 (4%)
Query 240 TQLKSSEDHAKYMALYDELTGLPNRRYVKDRLKKVIELSKESQHHSAILMMDLDNFKTVN 299
++L S+ K +A D LT L NR + + ++ ++QH ++ +DLDNFK VN
Sbjct 326 SELHSTYQRTKALAENDHLTKLANRYQFQVQADLLLSRCYDTQH-IWVMYIDLDNFKYVN 384
Query 300 DTLGHDYGDNLLKMVANRVKKCVRETET-------IARLGGDELLIILSNLSENEEIAQA 352
D GH GD+LL A V++ + E ARL GDE I+L + + A+
Sbjct 385 DKYGHQIGDSLLVSFATHVRQLCKNFEASHNTYSIAARLSGDEFAILLVSPKRFNDCAKI 444
Query 353 QAQAIAERISNSIYQPFNLENQVIQTSVSIGIFVFNDASIPQNELLKYADMALYQAKANG 412
AQ + I N P + + SIGI F +LL AD A+YQAK G
Sbjct 445 FAQRLLAPIQNKDNSPLSH----FPITASIGIATFPKDGEHIEKLLLNADTAMYQAKNAG 500
Query 413 KNCICTFDPLMEQNVISRASLLSDLRQALIRDEFELYYQP-IVDQHKKIIGYEALLRWIH 471
KN + + ++Q V R ++ LR L EF L YQP K+++G+E LLRW
Sbjct 501 KNQVAYYSQALDQIVQRRNNIERALRLGLFDQEFNLAYQPYFTCSGKRLVGFEVLLRWQS 560
Query 472 PVRGLILPGEFIEQAEKSDLIHLIGNRVLMMACQQLYQWSQNTDSAHWTLSVNISVQQFR 531
+ G + P EFI AE++ L I V+ A Q++ Q +S+N+S +
Sbjct 561 ELLGEVSPEEFIPIAEQTGLFGTIDRWVISKAFQEI-STLQAIVKEPIQVSINLSSAELN 619
Query 532 KSDFEENIIQIIQDSKANPYRLRLELTESMFYTDMQSSIEKMKKLIEIGVRFSMDDFGTG 591
+ I + + +P + E+TE+ F D Q S + +L +G ++DDFG+G
Sbjct 620 SLKLAQFIHRQAEQFGVSPAWIDFEITET-FAADSQ-SFPLLHELSRLGYGLTIDDFGSG 677
Query 592 YSSLNYLKLLPLDQLKIDRSFVKNMVDNSRDIAIVNTIINLAHILDLNVVAEGVETEEQF 651
Y+S+ L P+ ++K DR F+ ++ ++ ++ +I+L H + V AEG+E+E
Sbjct 678 YTSITQLVQYPVQKIKFDRHFLDTLIATNKQ-NVIRPLIDLCHSQSMKVTAEGIESETMH 736
Query 652 ICLTQNQCFTFQGYLFGRPLPIDSI 676
L +C QG+ FG P+ + I
Sbjct 737 QWLADYECDYMQGFYFGYPMSLSEI 761
>Q04855 Uncharacterized protein AZC_3085 [Azorhizobium caulinodans
(strain ATCC 43989 / DSM 5975 / JCM 20966 / LMG 6465 /
NBRC 14845 / NCIMB 13405 / ORS 571)]
Length=735
Score = 166 bits (421), Expect = 2e-46
Identities = 131/444 (30%), Positives = 206/444 (46%), Gaps = 28/444 (6%)
Query 238 DITQLKSSEDHAKYMALYDELTGLPNRRYVKDRLKKVIELSKESQHHSAILMMDLDNFKT 297
DI+ +S + +A D TGL NR + + + ++ A+++M L +
Sbjct 300 DISDRITSRRALERLAFTDMHTGLSNRTGLLR-----LCTGRPTRPSGAVVLM-LRDLGV 353
Query 298 VNDTLGHDYGDNLLKMVANRVKKCVRETETIARLGGDELLIILSNLSENEEIAQAQAQAI 357
V + G D+ + ++ AN + + + + + R G E ++ E+A+ +
Sbjct 354 VKTSFGDDWAEPMIVETANLLSRMLPQEACLGRTGESEFTVVTWQPGAAAELAETLIGRL 413
Query 358 AERISNSIYQPFNLENQVIQTSVSIGIFVF-NDASIPQNELLKYADMALYQAKANGKNCI 416
I + + V +G+ DA+ LL+ A+MA + +
Sbjct 414 RSAIESG--------GRRFYLRVGLGVVERPGDATY----LLRDAEMAARDCRDGH---L 458
Query 417 CTFDPLMEQNVISRASLLSDLRQALIR--DEFELYYQPIVDQHKK-IIGYEALLRWIHPV 473
F M R L LR + R L+YQP+V ++G+EAL+RW
Sbjct 459 LHFAEHMRAQHQQRLELEMALRDVIQRRTSALSLHYQPVVSARTGGLVGFEALVRWYSET 518
Query 474 RGLILPGEFIEQAEKSDLIHLIGNRVLMMACQQLYQWSQNTDS---AHWTLSVNISVQQF 530
G + P F+ AE +G V+ A W+ + A W +++N+S +
Sbjct 519 HGPVSPALFVPLAEAGGFAERLGAWVIETAISACAGWNVRRRAHGLAPWHIAINLSATEV 578
Query 531 RKSDFEENIIQIIQDSKANPYRLRLELTESMFYTDMQSSIEKMKKLIEIGVRFSMDDFGT 590
D E + Q + P + ELTES + +IE + +L +G ++DDFGT
Sbjct 579 VAPDLIERVRQTMAFHGLPPQCVCFELTESAILNQPEIAIETLSRLRALGCTTAIDDFGT 638
Query 591 GYSSLNYLKLLPLDQLKIDRSFVKNMVDNSRDIAIVNTIINLAHILDLNVVAEGVETEEQ 650
GYSSL+YL+ LP+D LKIDRSFV +MVDNSR IV +I +AH L ++VVAEGVET
Sbjct 639 GYSSLSYLQRLPMDVLKIDRSFVLDMVDNSRSREIVRVMIEMAHGLGMSVVAEGVETTGA 698
Query 651 FICLTQNQCFTFQGYLFGRPLPID 674
L Q C QG+LFGR +P D
Sbjct 699 LQILRQMGCDRAQGFLFGRAMPGD 722
>P23842 Probable cyclic di-GMP phosphodiesterase PdeA [Escherichia
coli (strain K12)]
Length=729
Score = 133 bits (335), Expect = 2e-35
Identities = 117/423 (28%), Positives = 205/423 (48%), Gaps = 23/423 (5%)
Query 253 ALYDELTGLPNRRYVKDRLKKVIELSKESQHHSAILMMDLDNFKTVNDTLGHDYGDNLLK 312
AL D LT LPN R +E + E + + + +DN + ++ G + ++
Sbjct 326 ALTDPLTLLPNFR--------ALEQAPEQEAGKSFCCLRIDNLEFMSRHYGLMMRVHCIR 377
Query 313 MVANRVKKCVRETETIARLGGDELLIILSNLSENEEIAQAQAQAIAERISNSIYQPFNLE 372
+ + ++E E + +L G ELL++LS E E Q I NS +N
Sbjct 378 SICRTLLPLMQENEKLYQLPGSELLLVLSG-PETEGRLQHMVN-----ILNSRQIHWNNT 431
Query 373 NQVIQTSVSIGIFVFNDASIPQNELLKYADMALYQAKANGKNCICTFDPLMEQNVISRAS 432
+ + G F N ++ Q L + + +A + + + + ++ +
Sbjct 432 GLDMGYGAAWGRFDGNQETL-QPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQTTKQVL 490
Query 433 LLSDLRQALIRDEFELYYQPIVDQHKKIIGYEALLRWIHPVRGLILPGEFIEQAEKSDLI 492
LL+ +R AL + + LY QPI ++K+ GY+ +L + G++ P +F+ + +L
Sbjct 491 LLNTIRTALDQGDLLLYAQPI--RNKEGEGYDEILARLKYDGGIMTPDKFLPLIAQFNLS 548
Query 493 HLIGNRVLMMACQQLYQW--SQNTDSAHWTLSVNISVQQFRKSDFEENIIQIIQDSKANP 550
+VL + L +W + D SVN+ + + II++ + +P
Sbjct 549 ARFDLQVL----ESLLKWLATHPCDKKGPRFSVNLMPLTLLQKNIAGRIIRLFKRYHISP 604
Query 551 YRLRLELTESMFYTDMQSSIEKMKKLIEIGVRFSMDDFGTGYSSLNYLKLLPLDQLKIDR 610
+ LE+TE +++ +SS+ +++L + G R ++DDFGTGY++ LK L D +KID
Sbjct 605 QAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADIIKIDG 664
Query 611 SFVKNMVDNSRDIAIVNTIINLAHILDLNVVAEGVETEEQFICLTQNQCFTFQGYLFGRP 670
FVK++V N+ D IV +I +LA L+VVAE VET++Q L + QGYL GRP
Sbjct 665 VFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGYLIGRP 724
Query 671 LPI 673
P+
Sbjct 725 QPL 727
>P32701 Probable cyclic di-GMP phosphodiesterase PdeC [Escherichia
coli (strain K12)]
Length=528
Score = 131 bits (329), Expect = 3e-35
Identities = 87/241 (36%), Positives = 128/241 (53%), Gaps = 12/241 (5%)
Query 437 LRQALIRDEFELYYQPIVD-QHKKIIGYEALLRWIHPVRGLILPGEFIEQAEKSDLIHLI 495
L++AL + + LYYQPI+D + +K IG EALLRW ++ P EFI AEK +I I
Sbjct 275 LQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQIMNPAEFIPLAEKEGMIEQI 334
Query 496 GNRVLMMACQQLYQWSQNTDSAHWTLSVNISVQQFRKSDFEENIIQIIQDSKANPYRLRL 555
+ V+ + L + + +S+N+S F S I Q + P +++
Sbjct 335 TDYVIDNVFRDLGDYLATHADRY--VSINLSASDFHTSRLIARINQKTEQYAVRPQQIKF 392
Query 556 ELTESMFYTDMQSSIEKMKKLI----EIGVRFSMDDFGTGYSSLNYLKLLPLDQLKIDRS 611
E+TE F ++KM +I + G ++DDFG GYS+L+ LK L +D LKID+S
Sbjct 393 EVTEHAFL-----DVDKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDILKIDKS 447
Query 612 FVKNMVDNSRDIAIVNTIINLAHILDLNVVAEGVETEEQFICLTQNQCFTFQGYLFGRPL 671
FV+ + + I II LAH L L +AEGVETEEQ L + QG+ F + +
Sbjct 448 FVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGWFFAKAM 507
Query 672 P 672
P
Sbjct 508 P 508
>P76446 Probable cyclic di-GMP phosphodiesterase PdeN [Escherichia
coli (strain K12)]
Length=518
Score = 129 bits (323), Expect = 2e-34
Identities = 78/240 (33%), Positives = 128/240 (53%), Gaps = 3/240 (1%)
Query 436 DLRQALIRDEFELYYQPIVD-QHKKIIGYEALLRWIHPVRGLILPGEFIEQAEKSDLIHL 494
++ A+ R++F + YQP+VD Q ++ G E LLRW HPV G I P FI AE +I
Sbjct 267 EIMTAIKREQFYVAYQPVVDTQALRVTGLEVLLRWRHPVAGEIPPDAFINFAESQKMIVP 326
Query 495 IGNRVLMMACQQLYQWSQNTDSAHWTLSVNISVQQFRKSDFEENIIQIIQDSKANPYRLR 554
+ + + + + + +NI+ F+ +I +++ A+ +++
Sbjct 327 LTQHLFELIARDAAEL-EKVLPVGVKFGINIAPDHLHSESFKADIQKLLTSLPAHHFQIV 385
Query 555 LELTESMFYTDMQSSIEKMKKLIEIGVRFSMDDFGTGYSSLNYLKLLPLDQLKIDRSFVK 614
LE+TE + Q + + L +GV ++DDFGTG+S+L YL+ LD LKIDR F+
Sbjct 386 LEITERDMLKE-QEATQLFAWLHSVGVEIAIDDFGTGHSALIYLERFTLDYLKIDRGFIN 444
Query 615 NMVDNSRDIAIVNTIINLAHILDLNVVAEGVETEEQFICLTQNQCFTFQGYLFGRPLPID 674
+ + +++ ++ LA L++ VAEGVET EQ L++ QGY RPLP+D
Sbjct 445 AIGTETITSPVLDAVLTLAKRLNMLTVAEGVETPEQARWLSERGVNFMQGYWISRPLPLD 504
Lambda K H a alpha
0.322 0.137 0.401 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 7601400
Database: fb1fd928c634e4317b38ed788374bc30.SwissProt.fasta
Posted date: May 31, 2024 6:51 PM
Number of letters in database: 13,362
Number of sequences in database: 18
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
