Comparative Genomics

ACIAD3572 / TrEMBL Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 8c5812c7b36bd1e843708d63f430a9c3.TrEMBL.fasta
           32 sequences; 4,837 total letters



Query= ACIAD3572

Length=150
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

A0A7G2SEH2 Transcription antitermination protein NusB [Acinetobac...  295     4e-108
N9AK10 Transcription antitermination protein NusB [Acinetobacter ...  289     1e-105
A0A1P8EKR3 Transcription antitermination protein NusB [Acinetobac...  289     1e-105
A0A0M1I856 Transcription antitermination protein NusB [Acinetobac...  289     1e-105
N9SQY1 Transcription antitermination protein NusB [Acinetobacter ...  281     1e-102
N9PL89 Transcription antitermination protein NusB [Acinetobacter ...  281     1e-102
A0A3N4T331 Transcription antitermination protein NusB [Acinetobac...  281     1e-102
A0A0B0KMS2 Transcription antitermination protein NusB [Acinetobac...  281     1e-102
N8V0E5 Transcription antitermination protein NusB [Acinetobacter ...  281     1e-102
V2UM54 Transcription antitermination protein NusB [Acinetobacter ...  281     2e-102
A0A3S0UQM2 Transcription antitermination protein NusB [Acinetobac...  281     2e-102
N9TNU4 Transcription antitermination protein NusB [Acinetobacter ...  280     2e-102
N8VGN0 Transcription antitermination protein NusB [Acinetobacter ...  280     2e-102
N8UL15 Transcription antitermination protein NusB [Acinetobacter ...  280     2e-102
N8Q8P8 Transcription antitermination protein NusB [Acinetobacter ...  280     2e-102
N8VPJ7 Transcription antitermination protein NusB [Acinetobacter ...  280     2e-102
A0A3L9MC10 Transcription antitermination protein NusB [Acinetobac...  280     3e-102
N9MX86 Transcription antitermination protein NusB [Acinetobacter ...  280     3e-102
D4XKP5 Transcription antitermination protein NusB [Acinetobacter ...  280     3e-102
A0A2K8PT98 Transcription antitermination protein NusB [Acinetobac...  280     3e-102
A0A5P1UR06 Transcription antitermination protein NusB [Acinetobac...  280     3e-102
N9FCW2 Transcription antitermination protein NusB [Acinetobacter ...  280     3e-102
S7WDI6 Transcription antitermination protein NusB [Acinetobacter ...  280     5e-102
N8RCZ1 Transcription antitermination protein NusB [Acinetobacter ...  280     5e-102
A0A8I0S5D2 Transcription antitermination protein NusB [Acinetobac...  280     5e-102
A0A1L6KIV8 Transcription antitermination protein NusB [Acinetobac...  280     5e-102
C0VLY4 Transcription antitermination protein NusB [Acinetobacter ...  280     5e-102
N9E6K9 Transcription antitermination protein NusB [Acinetobacter ...  280     5e-102
Q8G9H5 Transcription antitermination protein NusB [Photobacterium...  121     3e-39 
K7ZMQ5 Transcription termination factor [Onion yellows phytoplasm...  49.3    2e-11 
A0A8T6YJ03 Transcription antitermination protein NusB [Candidatus...  42.4    1e-08 
Q7WZG5 Putative transcription termination protein [Streptomyces g...  39.7    1e-08 


>A0A7G2SEH2 Transcription antitermination protein NusB [Acinetobacter 
sp]
Length=149

 Score = 295 bits (755),  Expect = 4e-108
 Identities = 149/149 (100%), Positives = 149/149 (100%), Gaps = 0/149 (0%)

Query  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ  60
            MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ
Sbjct  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ  60

Query  61   VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120
            VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF
Sbjct  61   VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120

Query  121  GGADSHKYINGVLDRLASRLREAEKQQAN  149
            GGADSHKYINGVLDRLASRLREAEKQQAN
Sbjct  121  GGADSHKYINGVLDRLASRLREAEKQQAN  149


>N9AK10 Transcription antitermination protein NusB [Acinetobacter 
soli NIPH 2899]
Length=149

 Score = 289 bits (739),  Expect = 1e-105
 Identities = 146/149 (98%), Positives = 147/149 (99%), Gaps = 0/149 (0%)

Query  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ  60
            MSQTLQAAYAAKRKARRFAVQGIYEWQMS NPVHEIEARTRVENAMHKVDL YYHELLTQ
Sbjct  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSHNPVHEIEARTRVENAMHKVDLSYYHELLTQ  60

Query  61   VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120
            VVAQHETLDTLLVPVLDREL+ALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF
Sbjct  61   VVAQHETLDTLLVPVLDRELSALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120

Query  121  GGADSHKYINGVLDRLASRLREAEKQQAN  149
            GGADSHKYINGVLDRLASRLREAEKQQAN
Sbjct  121  GGADSHKYINGVLDRLASRLREAEKQQAN  149


>A0A1P8EKR3 Transcription antitermination protein NusB [Acinetobacter 
soli]
Length=149

 Score = 289 bits (739),  Expect = 1e-105
 Identities = 146/149 (98%), Positives = 147/149 (99%), Gaps = 0/149 (0%)

Query  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ  60
            MSQTLQAAYAAKRKARRFAVQGIYEWQMS NPVHEIEARTRVENAMHKVDL YYHELLTQ
Sbjct  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSHNPVHEIEARTRVENAMHKVDLSYYHELLTQ  60

Query  61   VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120
            VVAQHETLDTLLVPVLDREL+ALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF
Sbjct  61   VVAQHETLDTLLVPVLDRELSALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120

Query  121  GGADSHKYINGVLDRLASRLREAEKQQAN  149
            GGADSHKYINGVLDRLASRLREAEKQQAN
Sbjct  121  GGADSHKYINGVLDRLASRLREAEKQQAN  149


>A0A0M1I856 Transcription antitermination protein NusB [Acinetobacter 
sp. C15]
Length=149

 Score = 289 bits (739),  Expect = 1e-105
 Identities = 146/149 (98%), Positives = 147/149 (99%), Gaps = 0/149 (0%)

Query  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ  60
            MSQTLQAAYAAKRKARRFAVQGIYEWQMS NPVHEIEARTRVENAMHKVDL YYHELLTQ
Sbjct  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSHNPVHEIEARTRVENAMHKVDLSYYHELLTQ  60

Query  61   VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120
            VVAQHETLDTLLVPVLDREL+ALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF
Sbjct  61   VVAQHETLDTLLVPVLDRELSALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120

Query  121  GGADSHKYINGVLDRLASRLREAEKQQAN  149
            GGADSHKYINGVLDRLASRLREAEKQQAN
Sbjct  121  GGADSHKYINGVLDRLASRLREAEKQQAN  149


>N9SQY1 Transcription antitermination protein NusB [Acinetobacter 
dispersus]
Length=149

 Score = 281 bits (719),  Expect = 1e-102
 Identities = 139/148 (94%), Positives = 145/148 (98%), Gaps = 0/148 (0%)

Query  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ  60
            MSQTLQAAYAAKRKARRFAVQGIYEWQMS+NPVHEIEARTRVENAMHKVDL YYHELLTQ
Sbjct  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSQNPVHEIEARTRVENAMHKVDLNYYHELLTQ  60

Query  61   VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120
            V+AQHE LD LL+PVLDRELNALDGVELATLRLGAYELRDHLE+PYRVVLDEAIELAKHF
Sbjct  61   VIAQHEALDELLIPVLDRELNALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHF  120

Query  121  GGADSHKYINGVLDRLASRLREAEKQQA  148
            GGADSHKYINGVLDRL+S+LREAEKQQA
Sbjct  121  GGADSHKYINGVLDRLSSKLREAEKQQA  148


>N9PL89 Transcription antitermination protein NusB [Acinetobacter 
sp. CIP 64.2]
Length=149

 Score = 281 bits (719),  Expect = 1e-102
 Identities = 140/148 (95%), Positives = 144/148 (97%), Gaps = 0/148 (0%)

Query  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ  60
            MSQTLQAAYAAKRKARRFAVQGIYEWQMS NPVHEIEARTRVENAMHKVDL YYHELLTQ
Sbjct  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSHNPVHEIEARTRVENAMHKVDLNYYHELLTQ  60

Query  61   VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120
            VVAQHE LD LL+PVLDRELNALDGVELATLRLGAYELRDHLE+PYRVVLDEAIELAKHF
Sbjct  61   VVAQHEALDELLIPVLDRELNALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHF  120

Query  121  GGADSHKYINGVLDRLASRLREAEKQQA  148
            GGADSHKYINGVLDRL+S+LREAEKQQA
Sbjct  121  GGADSHKYINGVLDRLSSKLREAEKQQA  148


>A0A3N4T331 Transcription antitermination protein NusB [Acinetobacter 
sp. BIGb0102]
Length=149

 Score = 281 bits (719),  Expect = 1e-102
 Identities = 140/148 (95%), Positives = 144/148 (97%), Gaps = 0/148 (0%)

Query  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ  60
            MSQTLQAAYAAKRKARRFAVQGIYEWQMS NPVHEIEARTRVENAMHKVDL YYHELLTQ
Sbjct  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSHNPVHEIEARTRVENAMHKVDLNYYHELLTQ  60

Query  61   VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120
            VVAQHE LD LL+PVLDRELNALDGVELATLRLGAYELRDHLE+PYRVVLDEAIELAKHF
Sbjct  61   VVAQHEALDELLIPVLDRELNALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHF  120

Query  121  GGADSHKYINGVLDRLASRLREAEKQQA  148
            GGADSHKYINGVLDRL+S+LREAEKQQA
Sbjct  121  GGADSHKYINGVLDRLSSKLREAEKQQA  148


>A0A0B0KMS2 Transcription antitermination protein NusB [Acinetobacter 
sp. neg1]
Length=149

 Score = 281 bits (719),  Expect = 1e-102
 Identities = 140/148 (95%), Positives = 144/148 (97%), Gaps = 0/148 (0%)

Query  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ  60
            MSQTLQAAYAAKRKARRFAVQGIYEWQMS NPVHEIEARTRVENAMHKVDL YYHELLTQ
Sbjct  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSHNPVHEIEARTRVENAMHKVDLNYYHELLTQ  60

Query  61   VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120
            VVAQHE LD LL+PVLDRELNALDGVELATLRLGAYELRDHLE+PYRVVLDEAIELAKHF
Sbjct  61   VVAQHEALDELLIPVLDRELNALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHF  120

Query  121  GGADSHKYINGVLDRLASRLREAEKQQA  148
            GGADSHKYINGVLDRL+S+LREAEKQQA
Sbjct  121  GGADSHKYINGVLDRLSSKLREAEKQQA  148


>N8V0E5 Transcription antitermination protein NusB [Acinetobacter 
vivianii]
Length=149

 Score = 281 bits (719),  Expect = 1e-102
 Identities = 140/148 (95%), Positives = 144/148 (97%), Gaps = 0/148 (0%)

Query  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ  60
            MSQTLQAAYAAKRKARRFAVQGIYEWQMS NPVHEIEARTRVENAMHKVDL YYHELLTQ
Sbjct  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSHNPVHEIEARTRVENAMHKVDLNYYHELLTQ  60

Query  61   VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120
            VVAQHE LD LL+PVLDRELNALDGVELATLRLGAYELRDHLE+PYRVVLDEAIELAKHF
Sbjct  61   VVAQHEALDELLIPVLDRELNALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHF  120

Query  121  GGADSHKYINGVLDRLASRLREAEKQQA  148
            GGADSHKYINGVLDRL+S+LREAEKQQA
Sbjct  121  GGADSHKYINGVLDRLSSKLREAEKQQA  148


>V2UM54 Transcription antitermination protein NusB [Acinetobacter 
tjernbergiae DSM 14971 = CIP 107465]
Length=149

 Score = 281 bits (718),  Expect = 2e-102
 Identities = 140/148 (95%), Positives = 144/148 (97%), Gaps = 0/148 (0%)

Query  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ  60
            MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDL YYHELLTQ
Sbjct  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLNYYHELLTQ  60

Query  61   VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120
            VVAQHE LD LL+PVLDREL ALDGVELATLRLGAYELRDHLE+PYRVVLDEAIELAKHF
Sbjct  61   VVAQHEALDELLIPVLDRELTALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHF  120

Query  121  GGADSHKYINGVLDRLASRLREAEKQQA  148
            GGADSHKYINGVLDRL+S+LREAEKQQA
Sbjct  121  GGADSHKYINGVLDRLSSKLREAEKQQA  148


>A0A3S0UQM2 Transcription antitermination protein NusB [Acinetobacter 
sp]
Length=149

 Score = 281 bits (718),  Expect = 2e-102
 Identities = 140/148 (95%), Positives = 144/148 (97%), Gaps = 0/148 (0%)

Query  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ  60
            MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDL YYHELLTQ
Sbjct  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLNYYHELLTQ  60

Query  61   VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120
            VVAQHE LD LL+PVLDREL ALDGVELATLRLGAYELRDHLE+PYRVVLDEAIELAKHF
Sbjct  61   VVAQHEALDELLIPVLDRELTALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHF  120

Query  121  GGADSHKYINGVLDRLASRLREAEKQQA  148
            GGADSHKYINGVLDRL+S+LREAEKQQA
Sbjct  121  GGADSHKYINGVLDRLSSKLREAEKQQA  148


>N9TNU4 Transcription antitermination protein NusB [Acinetobacter 
sp. CIP 102143]
Length=149

 Score = 280 bits (717),  Expect = 2e-102
 Identities = 139/148 (94%), Positives = 145/148 (98%), Gaps = 0/148 (0%)

Query  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ  60
            MSQTLQAAYAAKRKARRFAVQGIYEWQMS+NPVHEIEARTRVENAMHKVDL YYHELLTQ
Sbjct  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSQNPVHEIEARTRVENAMHKVDLNYYHELLTQ  60

Query  61   VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120
            VVAQH+ LD LL+PVLDRELNALDGVELATLRLGAYELRDHLE+PYRVVLDEAIELAKHF
Sbjct  61   VVAQHDALDELLIPVLDRELNALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHF  120

Query  121  GGADSHKYINGVLDRLASRLREAEKQQA  148
            GGADSHKYINGVLDRL+S+LREAEKQQA
Sbjct  121  GGADSHKYINGVLDRLSSKLREAEKQQA  148


>N8VGN0 Transcription antitermination protein NusB [Acinetobacter 
sp. CIP 102159]
Length=149

 Score = 280 bits (717),  Expect = 2e-102
 Identities = 139/148 (94%), Positives = 145/148 (98%), Gaps = 0/148 (0%)

Query  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ  60
            MSQTLQAAYAAKRKARRFAVQGIYEWQMS+NPVHEIEARTRVENAMHKVDL YYHELLTQ
Sbjct  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSQNPVHEIEARTRVENAMHKVDLNYYHELLTQ  60

Query  61   VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120
            VVAQH+ LD LL+PVLDRELNALDGVELATLRLGAYELRDHLE+PYRVVLDEAIELAKHF
Sbjct  61   VVAQHDALDELLIPVLDRELNALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHF  120

Query  121  GGADSHKYINGVLDRLASRLREAEKQQA  148
            GGADSHKYINGVLDRL+S+LREAEKQQA
Sbjct  121  GGADSHKYINGVLDRLSSKLREAEKQQA  148


>N8UL15 Transcription antitermination protein NusB [Acinetobacter 
sp. CIP 102529]
Length=149

 Score = 280 bits (717),  Expect = 2e-102
 Identities = 139/148 (94%), Positives = 145/148 (98%), Gaps = 0/148 (0%)

Query  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ  60
            MSQTLQAAYAAKRKARRFAVQGIYEWQMS+NPVHEIEARTRVENAMHKVDL YYHELLTQ
Sbjct  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSQNPVHEIEARTRVENAMHKVDLNYYHELLTQ  60

Query  61   VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120
            VVAQH+ LD LL+PVLDRELNALDGVELATLRLGAYELRDHLE+PYRVVLDEAIELAKHF
Sbjct  61   VVAQHDALDELLIPVLDRELNALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHF  120

Query  121  GGADSHKYINGVLDRLASRLREAEKQQA  148
            GGADSHKYINGVLDRL+S+LREAEKQQA
Sbjct  121  GGADSHKYINGVLDRLSSKLREAEKQQA  148


>N8Q8P8 Transcription antitermination protein NusB [Acinetobacter 
parvus DSM 16617 = CIP 108168]
Length=149

 Score = 280 bits (717),  Expect = 2e-102
 Identities = 139/148 (94%), Positives = 145/148 (98%), Gaps = 0/148 (0%)

Query  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ  60
            MSQTLQAAYAAKRKARRFAVQGIYEWQMS+NPVHEIEARTRVENAMHKVDL YYHELLTQ
Sbjct  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSQNPVHEIEARTRVENAMHKVDLNYYHELLTQ  60

Query  61   VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120
            VVAQH+ LD LL+PVLDRELNALDGVELATLRLGAYELRDHLE+PYRVVLDEAIELAKHF
Sbjct  61   VVAQHDALDELLIPVLDRELNALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHF  120

Query  121  GGADSHKYINGVLDRLASRLREAEKQQA  148
            GGADSHKYINGVLDRL+S+LREAEKQQA
Sbjct  121  GGADSHKYINGVLDRLSSKLREAEKQQA  148


>N8VPJ7 Transcription antitermination protein NusB [Acinetobacter 
sp. CIP 102129]
Length=149

 Score = 280 bits (717),  Expect = 2e-102
 Identities = 139/148 (94%), Positives = 145/148 (98%), Gaps = 0/148 (0%)

Query  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ  60
            MSQTLQAAYAAKRKARRFAVQGIYEWQMS+NPVHEIEARTRVENAMHKVDL YYHELLTQ
Sbjct  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSQNPVHEIEARTRVENAMHKVDLNYYHELLTQ  60

Query  61   VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120
            VVAQH+ LD LL+PVLDRELNALDGVELATLRLGAYELRDHLE+PYRVVLDEAIELAKHF
Sbjct  61   VVAQHDALDELLIPVLDRELNALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHF  120

Query  121  GGADSHKYINGVLDRLASRLREAEKQQA  148
            GGADSHKYINGVLDRL+S+LREAEKQQA
Sbjct  121  GGADSHKYINGVLDRLSSKLREAEKQQA  148


>A0A3L9MC10 Transcription antitermination protein NusB [Acinetobacter 
sp. 2JN-4]
Length=149

 Score = 280 bits (716),  Expect = 3e-102
 Identities = 139/148 (94%), Positives = 144/148 (97%), Gaps = 0/148 (0%)

Query  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ  60
            MSQTLQAAYAAKRKARRFAVQGIYEWQMS NPVHEIEARTRVENAMHKVDL YYHELLTQ
Sbjct  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSHNPVHEIEARTRVENAMHKVDLNYYHELLTQ  60

Query  61   VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120
            VVAQH+ LD LL+PVLDRELNALDGVELATLRLGAYELRDHLE+PYRVVLDEAIELAKHF
Sbjct  61   VVAQHDALDELLIPVLDRELNALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHF  120

Query  121  GGADSHKYINGVLDRLASRLREAEKQQA  148
            GGADSHKYINGVLDRL+S+LREAEKQQA
Sbjct  121  GGADSHKYINGVLDRLSSKLREAEKQQA  148


>N9MX86 Transcription antitermination protein NusB [Acinetobacter 
sp. NIPH 298]
Length=149

 Score = 280 bits (716),  Expect = 3e-102
 Identities = 139/148 (94%), Positives = 144/148 (97%), Gaps = 0/148 (0%)

Query  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ  60
            MSQTLQAAYAAKRKARRFAVQGIYEWQMS NPVHEIEARTRVENAMHKVDL YYHELLTQ
Sbjct  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSHNPVHEIEARTRVENAMHKVDLNYYHELLTQ  60

Query  61   VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120
            VVAQH+ LD LL+PVLDRELNALDGVELATLRLGAYELRDHLE+PYRVVLDEAIELAKHF
Sbjct  61   VVAQHDALDELLIPVLDRELNALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHF  120

Query  121  GGADSHKYINGVLDRLASRLREAEKQQA  148
            GGADSHKYINGVLDRL+S+LREAEKQQA
Sbjct  121  GGADSHKYINGVLDRLSSKLREAEKQQA  148


>D4XKP5 Transcription antitermination protein NusB [Acinetobacter 
haemolyticus ATCC 19194]
Length=149

 Score = 280 bits (716),  Expect = 3e-102
 Identities = 140/148 (95%), Positives = 145/148 (98%), Gaps = 0/148 (0%)

Query  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ  60
            MSQTLQAAYAAKRKARRFAVQGIYEWQMS+NPVHEIEARTRVENAMHKVDL YYHELLTQ
Sbjct  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSQNPVHEIEARTRVENAMHKVDLNYYHELLTQ  60

Query  61   VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120
            VVAQHE LD LLVPVLDREL+ALDGVELATLRLGAYELRDHLE+PYRVVLDEAIELAKHF
Sbjct  61   VVAQHEALDELLVPVLDRELSALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHF  120

Query  121  GGADSHKYINGVLDRLASRLREAEKQQA  148
            GGADSHKYINGVLDRL+S+LREAEKQQA
Sbjct  121  GGADSHKYINGVLDRLSSKLREAEKQQA  148


>A0A2K8PT98 Transcription antitermination protein NusB [Acinetobacter 
haemolyticus]
Length=149

 Score = 280 bits (716),  Expect = 3e-102
 Identities = 140/148 (95%), Positives = 145/148 (98%), Gaps = 0/148 (0%)

Query  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ  60
            MSQTLQAAYAAKRKARRFAVQGIYEWQMS+NPVHEIEARTRVENAMHKVDL YYHELLTQ
Sbjct  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSQNPVHEIEARTRVENAMHKVDLNYYHELLTQ  60

Query  61   VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120
            VVAQHE LD LLVPVLDREL+ALDGVELATLRLGAYELRDHLE+PYRVVLDEAIELAKHF
Sbjct  61   VVAQHEALDELLVPVLDRELSALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHF  120

Query  121  GGADSHKYINGVLDRLASRLREAEKQQA  148
            GGADSHKYINGVLDRL+S+LREAEKQQA
Sbjct  121  GGADSHKYINGVLDRLSSKLREAEKQQA  148


>A0A5P1UR06 Transcription antitermination protein NusB [Acinetobacter 
sp. C16S1]
Length=149

 Score = 280 bits (716),  Expect = 3e-102
 Identities = 140/148 (95%), Positives = 145/148 (98%), Gaps = 0/148 (0%)

Query  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ  60
            MSQTLQAAYAAKRKARRFAVQGIYEWQMS+NPVHEIEARTRVENAMHKVDL YYHELLTQ
Sbjct  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSQNPVHEIEARTRVENAMHKVDLNYYHELLTQ  60

Query  61   VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120
            VVAQHE LD LL+PVLDREL+ALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF
Sbjct  61   VVAQHEALDELLIPVLDRELSALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120

Query  121  GGADSHKYINGVLDRLASRLREAEKQQA  148
            GGADSHKYINGVLDRL+S+LREAEKQQA
Sbjct  121  GGADSHKYINGVLDRLSSKLREAEKQQA  148


>N9FCW2 Transcription antitermination protein NusB [Acinetobacter 
haemolyticus CIP 64.3 = MTCC 9819]
Length=149

 Score = 280 bits (716),  Expect = 3e-102
 Identities = 140/148 (95%), Positives = 145/148 (98%), Gaps = 0/148 (0%)

Query  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ  60
            MSQTLQAAYAAKRKARRFAVQGIYEWQMS+NPVHEIEARTRVENAMHKVDL YYHELLTQ
Sbjct  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSQNPVHEIEARTRVENAMHKVDLNYYHELLTQ  60

Query  61   VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120
            VVAQHE LD LLVPVLDREL+ALDGVELATLRLGAYELRDHLE+PYRVVLDEAIELAKHF
Sbjct  61   VVAQHEALDELLVPVLDRELSALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHF  120

Query  121  GGADSHKYINGVLDRLASRLREAEKQQA  148
            GGADSHKYINGVLDRL+S+LREAEKQQA
Sbjct  121  GGADSHKYINGVLDRLSSKLREAEKQQA  148


>S7WDI6 Transcription antitermination protein NusB [Acinetobacter 
junii CIP 107470 = MTCC 11364]
Length=149

 Score = 280 bits (715),  Expect = 5e-102
 Identities = 139/148 (94%), Positives = 145/148 (98%), Gaps = 0/148 (0%)

Query  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ  60
            MSQTLQAAYAAKRKARRFAVQGIYEWQMS+NPVHEIEARTRVENAMHKVDL YYHELLTQ
Sbjct  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSQNPVHEIEARTRVENAMHKVDLNYYHELLTQ  60

Query  61   VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120
            VVAQHE LD LL+PVLDREL+ALDGVELATLRLGAYELRDHLE+PYRVVLDEAIELAKHF
Sbjct  61   VVAQHEALDELLIPVLDRELSALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHF  120

Query  121  GGADSHKYINGVLDRLASRLREAEKQQA  148
            GGADSHKYINGVLDRL+S+LREAEKQQA
Sbjct  121  GGADSHKYINGVLDRLSSKLREAEKQQA  148


>N8RCZ1 Transcription antitermination protein NusB [Acinetobacter 
parvus NIPH 1103]
Length=149

 Score = 280 bits (715),  Expect = 5e-102
 Identities = 139/148 (94%), Positives = 145/148 (98%), Gaps = 0/148 (0%)

Query  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ  60
            MSQTLQAAYAAKRKARRFAVQGIYEWQMS+NPVHEIEARTRVENAMHKVDL YYHELLTQ
Sbjct  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSQNPVHEIEARTRVENAMHKVDLNYYHELLTQ  60

Query  61   VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120
            VVAQHE LD LL+PVLDREL+ALDGVELATLRLGAYELRDHLE+PYRVVLDEAIELAKHF
Sbjct  61   VVAQHEALDELLIPVLDRELSALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHF  120

Query  121  GGADSHKYINGVLDRLASRLREAEKQQA  148
            GGADSHKYINGVLDRL+S+LREAEKQQA
Sbjct  121  GGADSHKYINGVLDRLSSKLREAEKQQA  148


>A0A8I0S5D2 Transcription antitermination protein NusB [Acinetobacter 
sp. SK-43]
Length=149

 Score = 280 bits (715),  Expect = 5e-102
 Identities = 139/148 (94%), Positives = 145/148 (98%), Gaps = 0/148 (0%)

Query  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ  60
            MSQTLQAAYAAKRKARRFAVQGIYEWQMS+NPVHEIEARTRVENAMHKVDL YYHELLTQ
Sbjct  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSQNPVHEIEARTRVENAMHKVDLNYYHELLTQ  60

Query  61   VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120
            VVAQHE LD LL+PVLDREL+ALDGVELATLRLGAYELRDHLE+PYRVVLDEAIELAKHF
Sbjct  61   VVAQHEALDELLIPVLDRELSALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHF  120

Query  121  GGADSHKYINGVLDRLASRLREAEKQQA  148
            GGADSHKYINGVLDRL+S+LREAEKQQA
Sbjct  121  GGADSHKYINGVLDRLSSKLREAEKQQA  148


>A0A1L6KIV8 Transcription antitermination protein NusB [Acinetobacter 
haemolyticus]
Length=149

 Score = 280 bits (715),  Expect = 5e-102
 Identities = 139/148 (94%), Positives = 145/148 (98%), Gaps = 0/148 (0%)

Query  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ  60
            MSQTLQAAYAAKRKARRFAVQGIYEWQMS+NPVHEIEARTRVENAMHKVDL YYHELLTQ
Sbjct  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSQNPVHEIEARTRVENAMHKVDLNYYHELLTQ  60

Query  61   VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120
            VVAQHE LD LL+PVLDREL+ALDGVELATLRLGAYELRDHLE+PYRVVLDEAIELAKHF
Sbjct  61   VVAQHEALDELLIPVLDRELSALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHF  120

Query  121  GGADSHKYINGVLDRLASRLREAEKQQA  148
            GGADSHKYINGVLDRL+S+LREAEKQQA
Sbjct  121  GGADSHKYINGVLDRLSSKLREAEKQQA  148


>C0VLY4 Transcription antitermination protein NusB [Acinetobacter 
sp. (strain ATCC 27244 / 9458)]
Length=149

 Score = 280 bits (715),  Expect = 5e-102
 Identities = 139/148 (94%), Positives = 145/148 (98%), Gaps = 0/148 (0%)

Query  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ  60
            MSQTLQAAYAAKRKARRFAVQGIYEWQMS+NPVHEIEARTRVENAMHKVDL YYHELLTQ
Sbjct  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSQNPVHEIEARTRVENAMHKVDLNYYHELLTQ  60

Query  61   VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120
            VVAQHE LD LL+PVLDREL+ALDGVELATLRLGAYELRDHLE+PYRVVLDEAIELAKHF
Sbjct  61   VVAQHEALDELLIPVLDRELSALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHF  120

Query  121  GGADSHKYINGVLDRLASRLREAEKQQA  148
            GGADSHKYINGVLDRL+S+LREAEKQQA
Sbjct  121  GGADSHKYINGVLDRLSSKLREAEKQQA  148


>N9E6K9 Transcription antitermination protein NusB [Acinetobacter 
beijerinckii ANC 3835]
Length=149

 Score = 280 bits (715),  Expect = 5e-102
 Identities = 140/148 (95%), Positives = 144/148 (97%), Gaps = 0/148 (0%)

Query  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ  60
            MSQTLQAAYAAKRKARRFAVQGIYEWQMS NPVHEIEARTRVENAMHKVDL YYHELLTQ
Sbjct  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSHNPVHEIEARTRVENAMHKVDLNYYHELLTQ  60

Query  61   VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120
            VVAQHE LD LLVPVLDREL+ALDGVELATLRLGAYELRDHLE+PYRVVLDEAIELAKHF
Sbjct  61   VVAQHEALDELLVPVLDRELSALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHF  120

Query  121  GGADSHKYINGVLDRLASRLREAEKQQA  148
            GGADSHKYINGVLDRL+S+LREAEKQQA
Sbjct  121  GGADSHKYINGVLDRLSSKLREAEKQQA  148


>Q8G9H5 Transcription antitermination protein NusB [Photobacterium 
phosphoreum]
Length=157

 Score = 121 bits (303),  Expect = 3e-39
 Identities = 65/150 (43%), Positives = 93/150 (62%), Gaps = 14/150 (9%)

Query  10   AAKRKARRFAVQGIYEWQMSRNPVHEIE----ARTRVENAMHKVD----------LGYYH  55
            AA+R AR+FAVQ IY WQ+++  V +IE    +  + E   H+ D          + Y+ 
Sbjct  8    AARRNARQFAVQAIYSWQLTKGNVADIEQYFLSGDKFEEEEHQADAPVCKAPDTDVSYFR  67

Query  56   ELLTQVVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIE  115
            +L   VV  H+ LD+ + P L R L  LD +ELA LRL  YE+    ++P++VV++EAIE
Sbjct  68   DLFAGVVLSHQELDSKMRPYLSRPLQDLDQMELALLRLAMYEMVKREDVPFKVVINEAIE  127

Query  116  LAKHFGGADSHKYINGVLDRLASRLREAEK  145
            LAK FG  DSHK++NGVLD+ A  LR+ +K
Sbjct  128  LAKLFGAEDSHKFVNGVLDKAAPSLRKKDK  157


>K7ZMQ5 Transcription termination factor [Onion yellows phytoplasma 
OY-W]
Length=150

 Score = 49.3 bits (116),  Expect = 2e-11
 Identities = 28/91 (31%), Positives = 53/91 (58%), Gaps = 5/91 (5%)

Query  60   QVVAQHETLDTLLVPVL-DRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAK  118
            +++ + + +D ++   L D ++N L+ V+ A +RL  YEL +   I + +++DEAIEL K
Sbjct  47   KIITKLKFIDEIITKSLYDYKINRLNKVDRAIIRLATYELXE-TNISHAIIIDEAIELTK  105

Query  119  HF---GGADSHKYINGVLDRLASRLREAEKQ  146
             F        HK+ N +LD++  +L+   K+
Sbjct  106  QFCNLNDEKQHKFNNKLLDQIYQQLQNVXKE  136


>A0A8T6YJ03 Transcription antitermination protein NusB [Candidatus 
Karelsulcia muelleri]
Length=292

 Score = 42.4 bits (98),  Expect = 1e-08
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 0/67 (0%)

Query  79   ELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHFGGADSHKYINGVLDRLAS  138
            ++  L  + L  L++   EL    +IP++V L+E IE+ K F    S  YING+LD++  
Sbjct  222  KITKLSIINLIILQMAICELIFFKKIPFKVTLNEYIEITKIFSTKKSKIYINGILDKVVK  281

Query  139  RLREAEK  145
             L   +K
Sbjct  282  ILLNKKK  288


>Q7WZG5 Putative transcription termination protein [Streptomyces 
griseus]
Length=66

 Score = 39.7 bits (91),  Expect = 1e-08
 Identities = 21/40 (53%), Positives = 26/40 (65%), Gaps = 0/40 (0%)

Query  91   LRLGAYELRDHLEIPYRVVLDEAIELAKHFGGADSHKYIN  130
            LRLGAYEL      P  VV+DEA++LAK F   DS  ++N
Sbjct  19   LRLGAYELIWMDGTPDAVVIDEAVQLAKEFSTDDSPSFVN  58



Lambda      K        H        a         alpha
   0.323    0.136    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 398379


  Database: 8c5812c7b36bd1e843708d63f430a9c3.TrEMBL.fasta
    Posted date:  Jun 2, 2024  8:40 PM
  Number of letters in database: 4,837
  Number of sequences in database:  32



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40