BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 9cf4cb8e765bbf00522ae8b68a3acc81.SwissProt.fasta
7 sequences; 1,163 total letters
Query= ACIAD3440
Length=220
Score E
Sequences producing significant alignments: (Bits) Value
P64592 Inner membrane protein YhaI [Escherichia coli (strain K12)] 81.3 7e-24
P64593 Inner membrane protein YhaI [Escherichia coli O157:H7] 81.3 7e-24
P64590 Inner membrane protein YhaH [Escherichia coli (strain K12)] 77.0 3e-22
P64591 Inner membrane protein YhaH [Escherichia coli O157:H7] 77.0 3e-22
P0AF34 Uncharacterized protein YiiR [Escherichia coli (strain K12)] 40.0 2e-08
P0AF35 Uncharacterized protein YiiR [Escherichia coli O157:H7] 40.0 2e-08
P39604 Peptidoglycan glycosyltransferase RodA [Bacillus subtilis ... 34.7 3e-06
>P64592 Inner membrane protein YhaI [Escherichia coli (strain
K12)]
Length=118
Score = 81.3 bits (199), Expect = 7e-24
Identities = 46/117 (39%), Positives = 69/117 (59%), Gaps = 6/117 (5%)
Query 106 IDWAIKCFKNALDFKGRARRQEFWSFQFFYAVLGVSMLAFGHFLYLGHTLFIVSSIFML- 164
+ W + KN + F GRARR+E+W F A++G + L LG L +S +++L
Sbjct 1 MQWYLSVLKNYVGFSGRARRKEYWMFTLINAIVGAIINVIQ--LILGLELPYLSMLYLLA 58
Query 165 --LPALAVSVRRLHDINRSGWLLLINLVPIVGVLIVIFFFMTEEGDSRANAFGPPSK 219
LP LA+++RRLHD +RSG L+ VP +G L+++ FF T EG S +N +G K
Sbjct 59 TFLPVLALAIRRLHDTDRSGAWALLFFVPFIGWLVLLVFFCT-EGTSGSNRYGNDPK 114
>P64593 Inner membrane protein YhaI [Escherichia coli O157:H7]
Length=118
Score = 81.3 bits (199), Expect = 7e-24
Identities = 46/117 (39%), Positives = 69/117 (59%), Gaps = 6/117 (5%)
Query 106 IDWAIKCFKNALDFKGRARRQEFWSFQFFYAVLGVSMLAFGHFLYLGHTLFIVSSIFML- 164
+ W + KN + F GRARR+E+W F A++G + L LG L +S +++L
Sbjct 1 MQWYLSVLKNYVGFSGRARRKEYWMFTLINAIVGAIINVIQ--LILGLELPYLSMLYLLA 58
Query 165 --LPALAVSVRRLHDINRSGWLLLINLVPIVGVLIVIFFFMTEEGDSRANAFGPPSK 219
LP LA+++RRLHD +RSG L+ VP +G L+++ FF T EG S +N +G K
Sbjct 59 TFLPVLALAIRRLHDTDRSGAWALLFFVPFIGWLVLLVFFCT-EGTSGSNRYGNDPK 114
>P64590 Inner membrane protein YhaH [Escherichia coli (strain
K12)]
Length=121
Score = 77.0 bits (188), Expect = 3e-22
Identities = 48/119 (40%), Positives = 63/119 (53%), Gaps = 6/119 (5%)
Query 106 IDWAIKCFKNALDFKGRARRQEFWSFQF----FYAVLGVSMLAFGHFLYLGH-TLFIVSS 160
+DW +K KN + F+GRARR+E+W F F VLG+ G G L +
Sbjct 1 MDWYLKVLKNYVGFRGRARRKEYWMFILVNIIFTFVLGLLDKMLGWQRAGGEGILTTIYG 60
Query 161 IFMLLPALAVSVRRLHDINRSGWLLLINLVPIVGVLIVIFFFMTEEGDSRANAFGPPSK 219
I + LP AV RRLHD +RS W L+ L+P +G LI+I F + G N FGP K
Sbjct 61 ILVFLPWWAVQFRRLHDTDRSAWWALLFLIPFIGWLIII-VFNCQAGTPGENRFGPDPK 118
>P64591 Inner membrane protein YhaH [Escherichia coli O157:H7]
Length=121
Score = 77.0 bits (188), Expect = 3e-22
Identities = 48/119 (40%), Positives = 63/119 (53%), Gaps = 6/119 (5%)
Query 106 IDWAIKCFKNALDFKGRARRQEFWSFQF----FYAVLGVSMLAFGHFLYLGH-TLFIVSS 160
+DW +K KN + F+GRARR+E+W F F VLG+ G G L +
Sbjct 1 MDWYLKVLKNYVGFRGRARRKEYWMFILVNIIFTFVLGLLDKMLGWQRAGGEGILTTIYG 60
Query 161 IFMLLPALAVSVRRLHDINRSGWLLLINLVPIVGVLIVIFFFMTEEGDSRANAFGPPSK 219
I + LP AV RRLHD +RS W L+ L+P +G LI+I F + G N FGP K
Sbjct 61 ILVFLPWWAVQFRRLHDTDRSAWWALLFLIPFIGWLIII-VFNCQAGTPGENRFGPDPK 118
>P0AF34 Uncharacterized protein YiiR [Escherichia coli (strain
K12)]
Length=146
Score = 40.0 bits (92), Expect = 2e-08
Identities = 27/72 (38%), Positives = 41/72 (57%), Gaps = 5/72 (7%)
Query 119 FKGRARRQEFWSF--QFFYAVLGVSMLAFGHFLYLGHTLFIVSSIFMLLPALAVSVRRLH 176
FKGR R++FW + +F +L + LA + L + F + + +L P AV+V+RLH
Sbjct 10 FKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDIQTAAFCL--VCLLWPTAAVTVKRLH 67
Query 177 DINRSG-WLLLI 187
D RSG W L+
Sbjct 68 DRGRSGAWAFLM 79
>P0AF35 Uncharacterized protein YiiR [Escherichia coli O157:H7]
Length=146
Score = 40.0 bits (92), Expect = 2e-08
Identities = 27/72 (38%), Positives = 41/72 (57%), Gaps = 5/72 (7%)
Query 119 FKGRARRQEFWSF--QFFYAVLGVSMLAFGHFLYLGHTLFIVSSIFMLLPALAVSVRRLH 176
FKGR R++FW + +F +L + LA + L + F + + +L P AV+V+RLH
Sbjct 10 FKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDIQTAAFCL--VCLLWPTAAVTVKRLH 67
Query 177 DINRSG-WLLLI 187
D RSG W L+
Sbjct 68 DRGRSGAWAFLM 79
>P39604 Peptidoglycan glycosyltransferase RodA [Bacillus subtilis
(strain 168)]
Length=393
Score = 34.7 bits (78), Expect = 3e-06
Identities = 24/76 (32%), Positives = 41/76 (54%), Gaps = 2/76 (3%)
Query 131 FQFFYAVLGVSMLAFGHFLYLGHTLFIVSSIFMLLPALAVSVRRLHDINRSGWLLLINLV 190
F F+ + VS+ A G F G+T +I +F LL A+A++V D+ + L L +
Sbjct 20 FGVFFIISVVSIYAAGQFGQYGNTDWIQQIVFYLLGAVAITVLLYFDLEQLEKLSL--YI 77
Query 191 PIVGVLIVIFFFMTEE 206
I+G+L +I ++ E
Sbjct 78 FIIGILSLIILKISPE 93
Score = 22.7 bits (47), Expect = 0.023
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 7/48 (15%)
Query 133 FFYAVLGVSMLAFGHFLYLGHTLFIVSSIFMLLPALAVSVRRLHDINR 180
F ++++G S F ++G + ++ F L+ L V + ++H NR
Sbjct 281 FIFSIIGES------FGFIGCAIVVIM-FFFLIYRLVVLIDKIHPFNR 321
Score = 20.0 bits (40), Expect = 0.17
Identities = 9/54 (17%), Positives = 24/54 (44%), Gaps = 2/54 (4%)
Query 150 YLGHTLFIVSSIFMLLPALAVSVRRLHDINRSGWL--LLINLVPIVGVLIVIFF 201
Y G +FI F++ + + + W+ ++ L+ V + ++++F
Sbjct 12 YQGDLIFIFGVFFIISVVSIYAAGQFGQYGNTDWIQQIVFYLLGAVAITVLLYF 65
Lambda K H a alpha
0.330 0.143 0.454 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 174284
Database: 9cf4cb8e765bbf00522ae8b68a3acc81.SwissProt.fasta
Posted date: Jun 3, 2024 7:51 PM
Number of letters in database: 1,163
Number of sequences in database: 7
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
